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Song K, Ai Y, Zhou J, Dun B, Yue Q, Zhang L, Xu Y, Wang C. Isolation, Characterization, and Bioherbicidal Potential of the 16-Residue Peptaibols from Emericellopsis sp. XJ1056. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2024; 72:6315-6326. [PMID: 38470442 DOI: 10.1021/acs.jafc.3c08984] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/13/2024]
Abstract
Eco-friendly bioherbicides are urgently needed for managing the problematic weed Amaranthus retroflexus. A mass spectrometry- and bioassay-guided screening approach was employed to identify phytotoxic secondary metabolites from fungi for the development of such bioherbicides. This effort led to the discovery of six phytotoxic 16-residue peptaibols, including five new compounds (2-6) and a known congener (1), from Emericellopsis sp. XJ1056. Their planar structures were elucidated through the analysis of tandem mass and NMR spectroscopic data. The absolute configurations of the chiral amino acids were determined by advanced Marfey's method and chiral-phase liquid chromatography-mass spectrometry (LC-MS) analysis. Bioinformatic analysis and targeted gene disruption identified the biosynthetic gene cluster for these peptaibols. Compounds 1 and 2 significantly inhibited the radicle growth of A. retroflexus seedlings, and 1 demonstrated potent postemergence herbicidal activity against A. retroflexus while exhibiting minimal toxicity to Sorghum bicolor. Structure-activity relationship analysis underscored the importance of trans-4-hydroxy-l-prolines at both the 10th and 13th positions for the herbicidal activities of these peptaibols.
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Affiliation(s)
- Kainan Song
- Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, 12 Zhongguancun South Street, Beijing 100081, P. R. China
| | - Yutong Ai
- Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, 12 Zhongguancun South Street, Beijing 100081, P. R. China
| | - Jianshuang Zhou
- The National Key Facility for Crop Gene Resources and Genetic Improvement, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, 12 Zhongguancun South Street, Beijing 100081, P. R. China
| | - Baoqing Dun
- The National Key Facility for Crop Gene Resources and Genetic Improvement, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, 12 Zhongguancun South Street, Beijing 100081, P. R. China
- Zhongyuan Research Center, Chinese Academy of Agricultural Sciences, Xinxiang 453000, P. R. China
| | - Qun Yue
- Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, 12 Zhongguancun South Street, Beijing 100081, P. R. China
| | - Liwen Zhang
- Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, 12 Zhongguancun South Street, Beijing 100081, P. R. China
| | - Yuquan Xu
- Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, 12 Zhongguancun South Street, Beijing 100081, P. R. China
- Zhongyuan Research Center, Chinese Academy of Agricultural Sciences, Xinxiang 453000, P. R. China
| | - Chen Wang
- Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, 12 Zhongguancun South Street, Beijing 100081, P. R. China
- Zhongyuan Research Center, Chinese Academy of Agricultural Sciences, Xinxiang 453000, P. R. China
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Yang Q, Guo Y, Wang H, Luo Z, Chen Y, Jiang M, Lu H, Valverde BE, Qiang S, Strasser RJ, Chen S. Action of the fungal compound citrinin, a bioherbicide candidate, on photosystem II. PEST MANAGEMENT SCIENCE 2024; 80:133-148. [PMID: 37103431 DOI: 10.1002/ps.7513] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/11/2023] [Revised: 04/06/2023] [Accepted: 04/27/2023] [Indexed: 05/12/2023]
Abstract
BACKGROUND Bioherbicides are becoming more attractive as safe weed control tools towards sustainable agriculture. Natural products constitute an important source chemicals and chemical leads for discovery and development of novel pesticide target sites. Citrinin is a bioactive compound produced by fungi of the genera Penicillium and Aspergillus. However, its physiological-biochemical mechanism as a phytotoxin remains unclear. RESULTS Citrinin causes visible leaf lesions on Ageratina adenophora similar to those produced by the commercial herbicide bromoxynil. Phytotoxicity bioassay tests using 24 plant species confirmed that citrinin has a broad activity spectrum and therefore has potential as a bioherbicide. Based on chlorophyll fluorescence studies, citrinin mainly blocks PSII electron flow beyond plastoquinone QA at the acceptor side, resulting in the inactivation of PSII reaction centers. Furthermore, molecular modeling of citrinin docking to the A. adenophora D1 protein suggests that it binds to the plastoquinone QB site by a hydrogen bond between the O1 hydroxy oxygen atom of citrinin and the histidine 215 of the D1 protein, the same way as classical phenolic PSII herbicides do. Finally, 32 new citrinin derivatives were designed and sorted according to free energies on the basis of the molecular model of an interaction between the citrinin molecule and the D1 protein. Five of the modeled compounds had much higher ligand binding affinity within the D1 protein compared with lead compound citrinin. CONCLUSION Citrinin is a novel natural PSII inhibitor that has the potential to be developed into a bioherbicide or utilized as a lead compound for discovery of new derivatives with high herbicidal potency. © 2023 Society of Chemical Industry.
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Affiliation(s)
- Qian Yang
- Weed Research Laboratory, Nanjing Agricultural University, Nanjing, China
| | - Yanjing Guo
- Weed Research Laboratory, Nanjing Agricultural University, Nanjing, China
| | - He Wang
- Weed Research Laboratory, Nanjing Agricultural University, Nanjing, China
| | - Zhi Luo
- Weed Research Laboratory, Nanjing Agricultural University, Nanjing, China
| | - Ying Chen
- Weed Research Laboratory, Nanjing Agricultural University, Nanjing, China
| | - Mengyun Jiang
- Weed Research Laboratory, Nanjing Agricultural University, Nanjing, China
| | - Huan Lu
- Weed Research Laboratory, Nanjing Agricultural University, Nanjing, China
| | - Bernal E Valverde
- Weed Research Laboratory, Nanjing Agricultural University, Nanjing, China
- Research and Development in Tropical Agriculture, Alajuela, Costa Rica
| | - Sheng Qiang
- Weed Research Laboratory, Nanjing Agricultural University, Nanjing, China
| | - Reto Jörg Strasser
- Weed Research Laboratory, Nanjing Agricultural University, Nanjing, China
- Bioenergetics Laboratory, University of Geneva, Geneva, Switzerland
| | - Shiguo Chen
- Weed Research Laboratory, Nanjing Agricultural University, Nanjing, China
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Soares LTXMG, Basso MAF, Dos Santos CMR, Ali A, Vasconcelos LG, Dall'Oglio EL, Sampaio OM, Vieira LCC. Binding Properties of Photosynthetic Herbicides: Photosynthetic Activity and Molecular Docking Approach towards 1,4-Dihydropyridines Derivatives. Chem Biodivers 2022; 19:e202200586. [PMID: 36383100 DOI: 10.1002/cbdv.202200586] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2022] [Revised: 11/14/2022] [Accepted: 11/15/2022] [Indexed: 11/17/2022]
Abstract
In the current work, we describe the synthesis of 1,4-dihydropyridine (1,4-DHP) derivatives via Hantzsch multicomponent reaction and their evaluation as photosystem II (PSII) inhibitors through chlorophyll a fluorescence bioassay. Among all the compounds tested, 1,1'-(2,4,6-trimethyl-1,4-dihydropyridine-3,5-diyl)bis(ethan-1-one) (4b) showed best results, reducing the parameters performance index on absorption basis (PIabs ) and electron transport per reaction center by 61 % and 49 %, respectively, as compared to the control. These results indicate the inhibitory activity of PSII over the electron transport chain. Additionally, a molecular docking approach using the protein D1 (PDB code 4V82) was performed in order to assess the structure-activity relationship among the 1,4-DHP derivatives over the PSII, which revealed that both, size of the group at position 4 and the carbonyl groups at the dihydropyridine ring are important for the ligand's interaction, particularly for the hydrogen-bonding interaction with the residues His215, Ser264, and Phe265. Thus, the optimization of these molecular features is the aim of our research group to extend the knowledge of PSII electron chain inhibitors and the establishment of new potent bioactive molecular scaffolds.
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Affiliation(s)
- Luís T X M G Soares
- Department of Chemistry, Federal University of Mato Grosso, Cuiabá-MT, 78060-900, Brazil
| | - Marcelo A F Basso
- Department of Chemistry, Federal University of Mato Grosso, Cuiabá-MT, 78060-900, Brazil
| | - Clarice M R Dos Santos
- Engineering Faculty, Federal University of Mato Grosso, Várzea Grande-MT, 78060-900, Brazil
| | - Akbar Ali
- Department of Chemistry, Government College University, Faisalabad, 38000, Pakistan
| | - Leonardo G Vasconcelos
- Department of Chemistry, Federal University of Mato Grosso, Cuiabá-MT, 78060-900, Brazil
| | - Evandro L Dall'Oglio
- Department of Chemistry, Federal University of Mato Grosso, Cuiabá-MT, 78060-900, Brazil
| | - Olívia M Sampaio
- Department of Chemistry, Federal University of Mato Grosso, Cuiabá-MT, 78060-900, Brazil
| | - Lucas C C Vieira
- Department of Chemistry, Federal University of Mato Grosso, Cuiabá-MT, 78060-900, Brazil
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Battaglino B, Grinzato A, Pagliano C. Binding Properties of Photosynthetic Herbicides with the Q B Site of the D1 Protein in Plant Photosystem II: A Combined Functional and Molecular Docking Study. PLANTS (BASEL, SWITZERLAND) 2021; 10:plants10081501. [PMID: 34451546 PMCID: PMC8398153 DOI: 10.3390/plants10081501] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/29/2021] [Revised: 07/13/2021] [Accepted: 07/20/2021] [Indexed: 05/07/2023]
Abstract
Photosystem II (PSII) is a multi-subunit enzymatic complex embedded in the thylakoid membranes responsible for the primary photosynthetic reactions vital for plants. Many herbicides used for weed control inhibit PSII by interfering with the photosynthetic electron transport at the level of the D1 protein, through competition with the native plastoquinone for the QB site. Molecular details of the interaction of these herbicides in the D1 QB site remain to be elucidated in plants. Here, we investigated the inhibitory effect on plant PSII of the PSII-inhibiting herbicides diuron, metobromuron, bentazon, terbuthylazine and metribuzin. We combined analysis of OJIP chlorophyll fluorescence kinetics and PSII activity assays performed on thylakoid membranes isolated from pea plants with molecular docking using the high-resolution PSII structure recently solved from the same plant. Both approaches showed for terbuthylazine, metribuzin and diuron the highest affinity for the D1 QB site, with the latter two molecules forming hydrogen bonds with His215. Conversely, they revealed for bentazon the lowest PSII inhibitory effect accompanied by a general lack of specificity for the QB site and for metobromuron an intermediate behavior. These results represent valuable information for future design of more selective herbicides with enhanced QB binding affinities to be effective in reduced amounts.
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Affiliation(s)
- Beatrice Battaglino
- Applied Science and Technology Department—BioSolar Lab, Politecnico di Torino, Environment Park, Via Livorno 60, 10144 Torino, Italy;
| | - Alessandro Grinzato
- Department of Biomedical Sciences, University of Padova, Via Ugo Bassi 58 B, 35121 Padova, Italy;
| | - Cristina Pagliano
- Applied Science and Technology Department—BioSolar Lab, Politecnico di Torino, Environment Park, Via Livorno 60, 10144 Torino, Italy;
- Correspondence: ; Tel.: +39-0110904626
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Mostafa MAB, Calder EDD, Racys DT, Sutherland A. Intermolecular Aryl C-H Amination through Sequential Iron and Copper Catalysis. Chemistry 2017; 23:1044-1047. [PMID: 27918637 PMCID: PMC5396366 DOI: 10.1002/chem.201605671] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2016] [Indexed: 01/10/2023]
Abstract
A mild, efficient and regioselective method for para-amination of activated arenes has been developed through a combination of iron and copper catalysis. A diverse range of products were obtained from an operationally simple one-pot, two-step procedure involving bromination of the aryl substrate with the powerful Lewis acid iron(III) triflimide, followed by a copper(I)-catalysed N-arylation reaction. This two-step dehydrogenative process for the regioselective coupling of aromatic C-H bonds with non-activated amines was applicable to anisole-, phenol-, aniline- and acetanilide-type aryl compounds. Importantly, the arene substrates were used as the limiting reagent and required no protecting-group manipulations during the transformation.
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Affiliation(s)
- Mohamed A. B. Mostafa
- WestCHEM, School of Chemistry, The Joseph Black BuildingUniversity of GlasgowUniversity AvenueGlasgowG12 8QQUK
| | - Ewen D. D. Calder
- WestCHEM, School of Chemistry, The Joseph Black BuildingUniversity of GlasgowUniversity AvenueGlasgowG12 8QQUK
| | - Daugirdas T. Racys
- WestCHEM, School of Chemistry, The Joseph Black BuildingUniversity of GlasgowUniversity AvenueGlasgowG12 8QQUK
| | - Andrew Sutherland
- WestCHEM, School of Chemistry, The Joseph Black BuildingUniversity of GlasgowUniversity AvenueGlasgowG12 8QQUK
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Lu YH, Jin LP, Kong LC, Zhang YL. Phytotoxic, Antifungal and Immunosuppressive Metabolites from Aspergillus terreus QT122 Isolated from the Gut of Dragonfly. Curr Microbiol 2016; 74:84-89. [DOI: 10.1007/s00284-016-1157-y] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2016] [Accepted: 11/02/2016] [Indexed: 12/21/2022]
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Pappula V, Adimurthy S. Green process development for the preparation of 2,6-dibromo-4-nitroaniline from 4-nitroaniline using bromide–bromate salts in an aqueous acidic medium. RSC Adv 2016. [DOI: 10.1039/c6ra13680j] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Organic solvent-free process for the preparation of 2,6-dibromo-4-nitroaniline, from 4-nitroaniline using 2 : 1 bromide–bromate salts under aqueous acidic medium at ambient conditions has been developed.
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Affiliation(s)
- Venkatanarayana Pappula
- Academy of Scientific & Innovative Research
- CSIR – Central Salt & Marine Chemicals Research Institute
- Bhavnagar-364 002
- India
| | - Subbarayappa Adimurthy
- Academy of Scientific & Innovative Research
- CSIR – Central Salt & Marine Chemicals Research Institute
- Bhavnagar-364 002
- India
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Kerchev P, De Smet B, Waszczak C, Messens J, Van Breusegem F. Redox Strategies for Crop Improvement. Antioxid Redox Signal 2015; 23:1186-205. [PMID: 26062101 DOI: 10.1089/ars.2014.6033] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
Abstract
SIGNIFICANCE Recently, the agro-biotech industry has been driven by overcoming the limitations imposed by fluctuating environmental stress conditions on crop productivity. A common theme among (a)biotic stresses is the perturbation of the redox homeostasis. RECENT ADVANCES As a strategy to engineer stress-tolerant crops, many approaches have been centered on restricting the negative impact of reactive oxygen species (ROS) accumulation. CRITICAL ISSUES In this study, we discuss the scientific background of the existing redox-based strategies to improve crop performance and quality. In this respect, a special focus goes to summarizing the current patent landscape because this aspect is very often ignored, despite constituting the forefront of applied research. FUTURE DIRECTIONS The current increased understanding of ROS acting as signaling molecules has opened new avenues to exploit redox biology for crop improvement required for sustainable food security.
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Affiliation(s)
- Pavel Kerchev
- 1 Department of Plant Systems Biology , VIB, Ghent, Belgium .,2 Department of Plant Biotechnology and Bioinformatics, Ghent University , Ghent, Belgium
| | - Barbara De Smet
- 1 Department of Plant Systems Biology , VIB, Ghent, Belgium .,2 Department of Plant Biotechnology and Bioinformatics, Ghent University , Ghent, Belgium .,3 Structural Biology Research Center , VIB, Brussels, Belgium .,4 Brussels Center for Redox Biology , Brussel, Belgium .,5 Structural Biology Brussels, Vrije Universiteit Brussel , Brussel, Belgium
| | - Cezary Waszczak
- 1 Department of Plant Systems Biology , VIB, Ghent, Belgium .,2 Department of Plant Biotechnology and Bioinformatics, Ghent University , Ghent, Belgium .,3 Structural Biology Research Center , VIB, Brussels, Belgium .,4 Brussels Center for Redox Biology , Brussel, Belgium .,5 Structural Biology Brussels, Vrije Universiteit Brussel , Brussel, Belgium
| | - Joris Messens
- 3 Structural Biology Research Center , VIB, Brussels, Belgium .,4 Brussels Center for Redox Biology , Brussel, Belgium .,5 Structural Biology Brussels, Vrije Universiteit Brussel , Brussel, Belgium
| | - Frank Van Breusegem
- 1 Department of Plant Systems Biology , VIB, Ghent, Belgium .,2 Department of Plant Biotechnology and Bioinformatics, Ghent University , Ghent, Belgium
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