1
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Brewster RC, Labeaga IC, Soden CE, Jarvis AG. Macrocylases as synthetic tools for ligand synthesis: enzymatic synthesis of cyclic peptides containing metal-binding amino acids. ROYAL SOCIETY OPEN SCIENCE 2021; 8:211098. [PMID: 34737880 PMCID: PMC8564625 DOI: 10.1098/rsos.211098] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/28/2021] [Accepted: 10/07/2021] [Indexed: 06/13/2023]
Abstract
Improving the sustainability of synthesis is a major goal in green chemistry, which has been greatly aided by the development of asymmetric transition metal catalysis. Recent advances in asymmetric catalysis show that the ability to control the coordination sphere of substrates can lead to improvements in enantioselectivity and activity, in a manner resembling the operation of enzymes. Peptides can be used to mimic enzyme structures and their secondary interactions and they are easily accessible through solid-phase peptide synthesis. Despite this, cyclic peptides remain underexplored as chiral ligands for catalysis due to synthetic complications upon macrocyclization. Here, we show that the solid-phase synthesis of peptides containing metal-binding amino acids, bipyridylalanine (1), phenyl pyridylalanine (2) and N,N-dimethylhistidine (3) can be combined with peptide macrocylization using peptide cyclase 1 (PCY1) to yield cyclic peptides under mild conditions. High conversions of the linear peptides were observed (approx. 90%) and the Cu-bound cyclo(FSAS(1)SSKP) was shown to be a competent catalyst in the Friedel-Crafts/conjugate addition of indole. This study shows that PCY1 can tolerate peptides containing amino acids with classic inorganic and organometallic ligands as side chains, opening the door to the streamlined and efficient development of cyclic peptides as metal ligands.
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Affiliation(s)
- Richard C. Brewster
- EaStCHEM School of Chemistry, University of Edinburgh, Joseph Black Building, David Brewster Rd, Edinburgh EH9 3FJ, Scotland
| | - Irati Colmenero Labeaga
- EaStCHEM School of Chemistry, University of Edinburgh, Joseph Black Building, David Brewster Rd, Edinburgh EH9 3FJ, Scotland
| | - Catriona E. Soden
- EaStCHEM School of Chemistry, University of Edinburgh, Joseph Black Building, David Brewster Rd, Edinburgh EH9 3FJ, Scotland
| | - Amanda G. Jarvis
- EaStCHEM School of Chemistry, University of Edinburgh, Joseph Black Building, David Brewster Rd, Edinburgh EH9 3FJ, Scotland
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2
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Du ZH, Tao BX, Yuan M, Qin WJ, Xu YL, Wang P, Da CS. Peptide-Catalyzed Highly Asymmetric Cross-Aldol Reaction of Aldehydes to Biomimetically Synthesize 1,4-Dicarbonyls. Org Lett 2020; 22:4444-4450. [PMID: 32463241 DOI: 10.1021/acs.orglett.0c01407] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
β-Turn tetrapeptides were demonstrated to catalyze asymmetric aldol reaction of α-branched aldehydes and α-carbonyl aldehydes, i.e. glyoxylates and α-ketoaldehydes, to biomimetically synthesize acyclic all-carbon quaternary center-bearing 1,4-dicarbonyls in high yield and excellent enantioselectivity under mild conditions. The spatially restricted environment of the tetrapeptide warrants high enantioselectivity and yield with broad substrates. Using this protocol, (R)-pantolactone, the key intermediate of vitamin B5, was readily accessed in a practical, efficient, and environmentally benign process from inexpensive starting materials.
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Affiliation(s)
- Zhi-Hong Du
- Institute of Biochemistry and Molecular Biology, School of Life Sciences, Lanzhou University, Lanzhou 730000, China
| | - Bao-Xiu Tao
- Institute of Biochemistry and Molecular Biology, School of Life Sciences, Lanzhou University, Lanzhou 730000, China
| | - Meng Yuan
- Institute of Biochemistry and Molecular Biology, School of Life Sciences, Lanzhou University, Lanzhou 730000, China
| | - Wen-Juan Qin
- Institute of Biochemistry and Molecular Biology, School of Life Sciences, Lanzhou University, Lanzhou 730000, China
| | - Yan-Li Xu
- Institute of Biochemistry and Molecular Biology, School of Life Sciences, Lanzhou University, Lanzhou 730000, China
| | - Pei Wang
- School of Basic Medical Sciences, Ningxia Medical University, Yinchuan 750004, China
| | - Chao-Shan Da
- Institute of Biochemistry and Molecular Biology, School of Life Sciences, Lanzhou University, Lanzhou 730000, China.,State Key Laboratory of Applied Organic Chemistry, and Key Lab of Preclinical Study for New Drugs of Gansu Province, Lanzhou University, Lanzhou 730000, China
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3
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Du ZH, Qin WJ, Tao BX, Yuan M, Da CS. N-Primary-amine tetrapeptide-catalyzed highly asymmetric Michael addition of aliphatic aldehydes to maleimides. Org Biomol Chem 2020; 18:6899-6904. [DOI: 10.1039/d0ob01457e] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
The highly asymmetric Michael addition reaction between maleimides and aldehydes catalyzed by N-primary-amine β-turn tetrapeptides with excellent yields and enantioselectivities was reported.
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Affiliation(s)
- Zhi-Hong Du
- Institute of Biochemistry and Molecular Biology
- School of Life Sciences
- Lanzhou University
- Lanzhou 730000
- China
| | - Wen-Juan Qin
- Institute of Biochemistry and Molecular Biology
- School of Life Sciences
- Lanzhou University
- Lanzhou 730000
- China
| | - Bao-Xiu Tao
- Institute of Biochemistry and Molecular Biology
- School of Life Sciences
- Lanzhou University
- Lanzhou 730000
- China
| | - Meng Yuan
- Institute of Biochemistry and Molecular Biology
- School of Life Sciences
- Lanzhou University
- Lanzhou 730000
- China
| | - Chao-Shan Da
- Institute of Biochemistry and Molecular Biology
- School of Life Sciences
- Lanzhou University
- Lanzhou 730000
- China
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4
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Arribat M, Cavelier F, Rémond E. Phosphorus-containing amino acids with a P–C bond in the side chain or a P–O, P–S or P–N bond: from synthesis to applications. RSC Adv 2020. [DOI: 10.1039/c9ra10917j] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022] Open
Abstract
Strategies for the preparation of phosphorus-containing amino acids and their utility in the organic chemistry, physico-chemistry, agrochemistry, and pharmacology fields are reported.
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Affiliation(s)
| | - Florine Cavelier
- Institut des Biomolécules Max Mousseron
- IBMM
- UMR 5247
- CNRS
- Université de Montpellier
| | - Emmanuelle Rémond
- Institut des Biomolécules Max Mousseron
- IBMM
- UMR 5247
- CNRS
- Université de Montpellier
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5
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Chuchelkin IV, Gavrilov KN, Borisova NE, Perepukhov AM, Maximychev AV, Zheglov SV, Gavrilov VK, Firsin ID, Zimarev VS, Mikhel IS, Tafeenko VA, Murashova EV, Chernyshev VV, Goulioukina NS. Diamidophosphites from β-hydroxyamides: readily assembled ligands for Pd-catalyzed asymmetric allylic substitution. Dalton Trans 2020; 49:5625-5635. [DOI: 10.1039/d0dt00741b] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
Novel diamidophosphites based on β-hydroxyamides were prepared, and their individual and in situ formed complexes were tested in Pd-mediated allylations.
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6
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Yao G, Joswig J, Keller BG, Süssmuth RD. Total Synthesis of the Death Cap Toxin Phalloidin: Atropoisomer Selectivity Explained by Molecular‐Dynamics Simulations. Chemistry 2019; 25:8030-8034. [DOI: 10.1002/chem.201901888] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2019] [Indexed: 12/22/2022]
Affiliation(s)
- Guiyang Yao
- Institut für ChemieTechnische Universität Berlin Strasse des 17. Juni 124 10623 Berlin Germany
| | - Jan‐Oliver Joswig
- Department of Biology, Chemistry, PharmacyFreie Universität Berlin Takustrasse 3 14195 Berlin Germany
| | - Bettina G. Keller
- Department of Biology, Chemistry, PharmacyFreie Universität Berlin Takustrasse 3 14195 Berlin Germany
| | - Roderich D. Süssmuth
- Institut für ChemieTechnische Universität Berlin Strasse des 17. Juni 124 10623 Berlin Germany
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7
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Vicens L, Costas M. Biologically inspired oxidation catalysis using metallopeptides. Dalton Trans 2018; 47:1755-1763. [DOI: 10.1039/c7dt03657d] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Metalloenzymes can catalyze the oxidation of hydrocarbons with high efficiency and selectivity. For this reason, they are taken as inspiration for the development of new catalyst. A promising strategy is the combination of metal coordination complexes and peptide chains. The use of metallopeptides in oxidation reactions is discussed.
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Affiliation(s)
- Laia Vicens
- Institut de Química Computacional i Catàlisi (IQCC) and Departament de Química
- Universitat de Girona
- Girona E-17071
- Spain
| | - Miquel Costas
- Institut de Química Computacional i Catàlisi (IQCC) and Departament de Química
- Universitat de Girona
- Girona E-17071
- Spain
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8
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Kinghorn MJ, Valdivia-Berroeta GA, Chantry DR, Smith MS, Ence CC, Draper SRE, Duval JS, Masino BM, Cahoon SB, Flansburg RR, Conder CJ, Price JL, Michaelis DJ. Proximity-Induced Reactivity and Product Selectivity with a Rationally Designed Bifunctional Peptide Catalyst. ACS Catal 2017. [DOI: 10.1021/acscatal.7b02699] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Michael J. Kinghorn
- Department of Chemistry and
Biochemistry, Brigham Young University, Provo, Utah 84602, United States
| | | | - Donalee R. Chantry
- Department of Chemistry and
Biochemistry, Brigham Young University, Provo, Utah 84602, United States
| | - Mason S. Smith
- Department of Chemistry and
Biochemistry, Brigham Young University, Provo, Utah 84602, United States
| | - Chloe C. Ence
- Department of Chemistry and
Biochemistry, Brigham Young University, Provo, Utah 84602, United States
| | - Steven R. E. Draper
- Department of Chemistry and
Biochemistry, Brigham Young University, Provo, Utah 84602, United States
| | - Jared S. Duval
- Department of Chemistry and
Biochemistry, Brigham Young University, Provo, Utah 84602, United States
| | - Bryan M. Masino
- Department of Chemistry and
Biochemistry, Brigham Young University, Provo, Utah 84602, United States
| | - Samuel B. Cahoon
- Department of Chemistry and
Biochemistry, Brigham Young University, Provo, Utah 84602, United States
| | - Rachael R. Flansburg
- Department of Chemistry and
Biochemistry, Brigham Young University, Provo, Utah 84602, United States
| | - Cory J. Conder
- Department of Chemistry and
Biochemistry, Brigham Young University, Provo, Utah 84602, United States
| | - Joshua L. Price
- Department of Chemistry and
Biochemistry, Brigham Young University, Provo, Utah 84602, United States
| | - David J. Michaelis
- Department of Chemistry and
Biochemistry, Brigham Young University, Provo, Utah 84602, United States
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9
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Lach J, Palm GJ, Jones PG, Heinicke JW. One-Pot Synthesis of Phosphanylbis(N-arylglycines) and Spontaneous Diastereoselective Lactamization ofP-Alkyl Derivatives To Form Five-Membered P,N-Heterocyclic Amino Acids. Eur J Inorg Chem 2016. [DOI: 10.1002/ejic.201600202] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Joanna Lach
- Institut für Biochemie; Anorganische Chemie; Ernst-Moritz-Arndt-Universität Greifswald; Felix-Hausdorff-Strasse 4 17487 Greifswald Germany
| | - Gottfried J. Palm
- Institut für Biochemie; Molekulare Strukturbiologie; Ernst-Moritz-Arndt-Universität Greifswald; Felix-Hausdorff-Strasse 4 17487 Greifswald Germany
| | - Peter G. Jones
- Institut für Anorganische und Analytische Chemie der Technischen Universität Braunschweig; Hagenring 30 38106 Braunschweig Germany
| | - Joachim W. Heinicke
- Institut für Biochemie; Anorganische Chemie; Ernst-Moritz-Arndt-Universität Greifswald; Felix-Hausdorff-Strasse 4 17487 Greifswald Germany
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10
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Lücke D, Dalton T, Ley SV, Wilson ZE. Synthesis of Natural and Unnatural Cyclooligomeric Depsipeptides Enabled by Flow Chemistry. Chemistry 2016; 22:4206-17. [PMID: 26844421 PMCID: PMC4797712 DOI: 10.1002/chem.201504457] [Citation(s) in RCA: 35] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2015] [Indexed: 11/21/2022]
Abstract
Flow chemistry has been successfully integrated into the synthesis of a series of cyclooligomeric depsipeptides of three different ring sizes including the natural products beauvericin (1 a), bassianolide (2 b) and enniatin C (1 b). A reliable flow chemistry protocol was established for the coupling and macrocyclisation to form challenging N‐methylated amides. This flexible approach has allowed the rapid synthesis of both natural and unnatural depsipeptides in high yields, enabling further exploration of their promising biological activity.
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Affiliation(s)
- Daniel Lücke
- Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge, CB2 1EW, UK
| | - Toryn Dalton
- Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge, CB2 1EW, UK
| | - Steven V Ley
- Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge, CB2 1EW, UK
| | - Zoe E Wilson
- Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge, CB2 1EW, UK.
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11
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Applegate GA, Berkowitz DB. Exploiting Enzymatic Dynamic Reductive Kinetic Resolution (DYRKR) in Stereocontrolled Synthesis. Adv Synth Catal 2015; 357:1619-1632. [PMID: 26622223 PMCID: PMC4662550 DOI: 10.1002/adsc.201500316] [Citation(s) in RCA: 65] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Abstract
Over the past two decades, the domains of both frontline synthetic organic chemistry and process chemistry and have seen an increase in crosstalk between asymmetric organic/organometallic approaches and enzymatic approaches to stereocontrolled synthesis. This review highlights the particularly auspicious role for dehydrogenase enzymes in this endeavor, with a focus on dynamic reductive kinetic resolutions (DYRKR) to "deracemize" building blocks, often setting two stereocenters in so doing. The scope and limitations of such dehydrogenase-mediated processes are overviewed, as are future possibilities for the evolution of enzymatic DYRKR.
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Affiliation(s)
| | - David B. Berkowitz
- Department of Chemistry, University of Nebraska, Lincoln, NE 68588-0304 USA
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12
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Sista P, Ghosh K, Martinez JS, Rocha RC. Metallo-Biopolymers: Conjugation Strategies and Applications. POLYM REV 2014. [DOI: 10.1080/15583724.2014.913063] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
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13
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Raynal M, Ballester P, Vidal-Ferran A, van Leeuwen PWNM. Supramolecular catalysis. Part 2: artificial enzyme mimics. Chem Soc Rev 2013; 43:1734-87. [PMID: 24365792 DOI: 10.1039/c3cs60037h] [Citation(s) in RCA: 649] [Impact Index Per Article: 59.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
The design of artificial catalysts able to compete with the catalytic proficiency of enzymes is an intense subject of research. Non-covalent interactions are thought to be involved in several properties of enzymatic catalysis, notably (i) the confinement of the substrates and the active site within a catalytic pocket, (ii) the creation of a hydrophobic pocket in water, (iii) self-replication properties and (iv) allosteric properties. The origins of the enhanced rates and high catalytic selectivities associated with these properties are still a matter of debate. Stabilisation of the transition state and favourable conformations of the active site and the product(s) are probably part of the answer. We present here artificial catalysts and biomacromolecule hybrid catalysts which constitute good models towards the development of truly competitive artificial enzymes.
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Affiliation(s)
- Matthieu Raynal
- Institute of Chemical Research of Catalonia (ICIQ), Av. Països Catalans 16, 43007 Tarragona, Spain.
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14
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Affiliation(s)
- Jared C. Lewis
- Searle
Chemistry Lab, Department of Chemistry, The University of Chicago, 5735 South Ellis Avenue, Chicago, Illinois 60637, United States
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15
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Guisado-Barrios G, Muñoz BK, Kamer PCJ, Lastdrager B, van der Marel G, Overhand M, Vega-Vázquez M, Martin-Pastor M. Cyclic decapeptide gramicidin S derivatives containing phosphines: novel ligands for asymmetric catalysis. Dalton Trans 2013; 42:1973-8. [DOI: 10.1039/c2dt31782f] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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16
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Ramillien M, Vanthuyne N, Jean M, Gherase D, Giorgi M, Naubron JV, Piras P, Roussel C. Enantiomers of dimethyl [(2E)-1,3-diphenylprop-2-en-1-yl]propanedioate resulting from allylic alkylation reaction: Elution order on major high-performance liquid chromatography chiral columns. J Chromatogr A 2012; 1269:82-93. [DOI: 10.1016/j.chroma.2012.09.025] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2012] [Revised: 09/04/2012] [Accepted: 09/06/2012] [Indexed: 01/28/2023]
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17
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Shaw WJ. The Outer-Coordination Sphere: Incorporating Amino Acids and Peptides as Ligands for Homogeneous Catalysts to Mimic Enzyme Function. CATALYSIS REVIEWS-SCIENCE AND ENGINEERING 2012. [DOI: 10.1080/01614940.2012.679453] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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18
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Peulecke N, Kindermann MK, Köckerling M, Heinicke J. Phosphonium bis(glycolates) and phosphinoglycolates: Synthesis, solvolysis, oxidation to (thio)phosphinoylglycolates and use as ligands in Ni-catalyzed ethylene oligomerization. Polyhedron 2012. [DOI: 10.1016/j.poly.2012.04.019] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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19
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20
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21
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Sambasivan R, Ball ZT. Determination of orientational isomerism in rhodium(ii) metallopeptides by pyrene fluorescence. Org Biomol Chem 2012; 10:8203-6. [DOI: 10.1039/c2ob26667a] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
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22
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Zaykov AN, Ball ZT. A general synthesis of dirhodium metallopeptides as MDM2 ligands. Chem Commun (Camb) 2011; 47:10927-9. [PMID: 21912780 DOI: 10.1039/c1cc13169a] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Abstract
A synthesis of multifunctional dirhodium metallopeptide ligands for MDM2 is presented. An orthogonal protection scheme of palladium-catalyzed de-allylation on a metallopeptide substrate allows specific dirhodium incorporation in a complex peptide. Sequence effects on MDM2 binding are discussed.
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Affiliation(s)
- Alexander N Zaykov
- Department of Chemistry, Rice University, 6100 Main St., MS60, Houston, TX 77005, USA
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23
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Beck W. Metal Complexes of Biologically Important Ligands, CLXXVI.[1] Formation of Peptides within the Coordination Sphere of Metal Ions and of Classical and Organometallic Complexes and Some Aspects of Prebiotic Chemistry. Z Anorg Allg Chem 2011. [DOI: 10.1002/zaac.201100137] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
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24
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Whitehead DC, Fhaner M, Borhan B. A peptide bromoiodinane approach for asymmetric bromolactonization. Tetrahedron Lett 2011. [DOI: 10.1016/j.tetlet.2011.02.056] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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25
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Heinicke J, Lach J, Basvani KR, Peulecke N, Jones PG, Köckerling M. α-Phosphino Amino Acids: Synthesis, Structure, and Reactivity. PHOSPHORUS SULFUR 2011. [DOI: 10.1080/10426507.2010.514485] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Affiliation(s)
- Joachim Heinicke
- a Institut für Biochemie–Anorganische Chemie , Universität Greifswald , Germany
| | - Joanna Lach
- a Institut für Biochemie–Anorganische Chemie , Universität Greifswald , Germany
| | | | - Normen Peulecke
- a Institut für Biochemie–Anorganische Chemie , Universität Greifswald , Germany
| | - Peter G. Jones
- b Institut für Anorganische und Analytische Chemie , Technische Universität Braunschweig , Germany
| | - Martin Köckerling
- c Anorganische Chemie–Festkörperchemie , Universität Rostock , Germany
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26
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Heinicke J, Basvani KR, Jones PG. α-Phosphino Amino Acids: Synthesis, Structure, and Reactivity of Phosphaprolines. PHOSPHORUS SULFUR 2011. [DOI: 10.1080/10426507.2010.515956] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Affiliation(s)
- Joachim Heinicke
- a Institut für Biochemie–Anorganische Chemie , Universität Greifswald , Germany
| | | | - Peter G. Jones
- b Institut für Anorganische und Analytische Chemie , Technische Universität Braunschweig , Germany
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27
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Deuss PJ, den Heeten R, Laan W, Kamer PCJ. Bioinspired Catalyst Design and Artificial Metalloenzymes. Chemistry 2011; 17:4680-98. [DOI: 10.1002/chem.201003646] [Citation(s) in RCA: 166] [Impact Index Per Article: 12.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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28
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Shoulders MD, Kotch FW, Choudhary A, Guzei IA, Raines RT. The aberrance of the 4S diastereomer of 4-hydroxyproline. J Am Chem Soc 2010; 132:10857-65. [PMID: 20681719 PMCID: PMC2931826 DOI: 10.1021/ja103082y] [Citation(s) in RCA: 59] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Prolyl 4-hydroxylases install a hydroxyl group in the 4R configuration on the gamma-carbon atom of certain (2S)-proline (Pro) residues in tropocollagen, elastin, and other proteins to form (2S,4R)-4-hydroxyproline (Hyp). The gauche effect arising from this prevalent post-translational modification enforces a C(gamma)-exo ring pucker and stabilizes the collagen triple helix. The Hyp diastereomer (2S,4S)-4-hydroxyproline (hyp) has not been observed in a protein, despite the ability of electronegative 4S substituents to enforce the more common C(gamma)-endo ring pucker of Pro. Here, we use density functional theory, spectroscopy, crystallography, and calorimetry to explore the consequences of hyp incorporation on protein stability using a collagen model system. We find that the 4S-hydroxylation of Pro to form hyp does indeed enforce a C(gamma)-endo ring pucker but a transannular hydrogen bond between the hydroxyl moiety and the carbonyl of hyp distorts the main-chain torsion angles that typically accompany a C(gamma)-endo ring pucker. This same transannular hydrogen bond enhances an n-->pi* interaction that stabilizes the trans conformation of the peptide bond preceding hyp, endowing hyp with the unusual combination of a C(gamma)-endo ring pucker and high trans/cis ratio. O-Methylation of hyp to form (2S,4S)-4-methoxyproline (mop) eliminates the transannular hydrogen bond and restores a prototypical C(gamma)-endo pucker. mop residues endow the collagen triple helix with much more conformational stability than do hyp residues. These findings highlight the critical importance of the configuration of the hydroxyl group installed on C(gamma) of proline residues.
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Affiliation(s)
- Matthew D. Shoulders
- Department of Chemistry, University of Wisconsin–Madison, Madison, Wisconsin 53706
| | - Frank W. Kotch
- Department of Chemistry, University of Wisconsin–Madison, Madison, Wisconsin 53706
| | - Amit Choudhary
- Graduate Program in Biophysics. University of Wisconsin–Madison, Madison, Wisconsin 53706
| | - Ilia A. Guzei
- Department of Chemistry, University of Wisconsin–Madison, Madison, Wisconsin 53706
| | - Ronald T. Raines
- Department of Chemistry, University of Wisconsin–Madison, Madison, Wisconsin 53706
- Department of Biochemistry. University of Wisconsin–Madison, Madison, Wisconsin 53706
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29
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Moriuchi T, Hirao T. Design of ferrocene-dipeptide bioorganometallic conjugates to induce chirality-organized structures. Acc Chem Res 2010; 43:1040-51. [PMID: 20377253 DOI: 10.1021/ar100022n] [Citation(s) in RCA: 129] [Impact Index Per Article: 9.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The highly ordered molecular assemblies in proteins can have a variety of functions, as observed in enzymes, receptors, and the like. Synthetic scientists are constructing bioinspired systems by harnessing the self-assembling properties of short peptides. Secondary structures such as alpha-helices, beta-sheets, and beta-turns are important in protein folding, which is mostly directed and stabilized by hydrogen bonding and the hydrophobic interactions of side chains. The design of secondary structure mimics that are composed of short peptides has attracted much attention, both for gaining fundamental insight into the factors affecting protein folding and for developing pharmacologically useful compounds, artificial receptors, asymmetric catalysts, and new materials. Ferrocenes are an organometallic scaffold with a central reverse-turn unit based on the inter-ring spacing of about 3.3 A, which is a suitable distance for hydrogen bonding between attached peptide strands. The conjugation of organometallic compounds with biomolecules such as amino acids, peptides, and DNA should provide novel systems that reflect properties of both the ferrocene and the biologically derived moieties. In this Account, we focus on recent advances in the design of ferrocene-peptide bioconjugates, which help illustrate the peptidomimetic basis for protein folding and the means of constructing highly ordered molecular assemblies. Ferrocene-peptide bioconjugates are constructed to form chirality-organized structures in both solid and solution states. The ferrocene serves as a reliable organometallic scaffold for the construction of protein secondary structures via intramolecular hydrogen bonding: the attached dipeptide strands are constrained within the appropriate dimensions. The introduction of the chiral dipeptide chains into the ferrocene scaffold induces the conformational enantiomerization of the ferrocenyl moiety; the chirality-organized structure results from intramolecular hydrogen bonding. The configuration and sequence of the amino acids are instrumental in the process. Regulation of the directionality and specificity of hydrogen bonding is a key component in the design of various molecular assemblies. Ferrocene-peptide bioconjugates also have a strong tendency to self-assemble through the contributions of available hydrogen-bonding donors in the solid state. Some ferrocene-peptide bioconjugates bearing only one dipeptide chain exhibit a helically ordered molecular assembly through a network of intermolecular (rather than intramolecular) hydrogen bonds. The propensity to form the chiral helicity appears to be controlled by the chirality of the dipeptide chains. Organization of host molecules is a useful strategy for forming artificial receptors. The conformationally regulated ferrocene-peptide bioconjugate provides the chirality-organized binding site for size-selective and chiral recognition of dicarboxylic acids through multipoint hydrogen bonds. Metal ions serve a variety of purposes in proteins, including structural stabilization for biological function. The complexation of ferrocene-peptide bioconjugates with palladium(II) compounds not only stabilizes the chirality conformational regulation but also induces conformational regulation of the dipeptide chain through complexation and intramolecular chirality organization. Construction of the chirality-organized ferrocene-peptide bioconjugates is also achieved by metal-directed assembly. These varied examples amply demonstrate the value of ferrocene-peptide bioconjugates in asserting architectural control over highly ordered molecular assemblies.
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Affiliation(s)
- Toshiyuki Moriuchi
- Department of Applied Chemistry, Graduate School of Engineering, Osaka University, Yamada-oka, Suita, Osaka 565-0871, Japan
| | - Toshikazu Hirao
- Department of Applied Chemistry, Graduate School of Engineering, Osaka University, Yamada-oka, Suita, Osaka 565-0871, Japan
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Sambasivan R, Ball ZT. Metallopeptides for Asymmetric Dirhodium Catalysis. J Am Chem Soc 2010; 132:9289-91. [DOI: 10.1021/ja103747h] [Citation(s) in RCA: 117] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Ramya Sambasivan
- Department of Chemistry, Rice University, MS 60, 6100 Main Street, Houston, Texas
| | - Zachary T. Ball
- Department of Chemistry, Rice University, MS 60, 6100 Main Street, Houston, Texas
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Laan W, Muñoz BK, den Heeten R, Kamer PCJ. Artificial Metalloenzymes through Cysteine-Selective Conjugation of Phosphines to Photoactive Yellow Protein. Chembiochem 2010; 11:1236-9. [DOI: 10.1002/cbic.201000159] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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32
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Swennenhuis BHG, Chen R, van Leeuwen PWNM, de Vries JG, Kamer PCJ. Supported Chiral Monodentate Ligands in Rhodium-Catalysed Asymmetric Hydrogenation and Palladium-Catalysed Asymmetric Allylic Alkylation. European J Org Chem 2009. [DOI: 10.1002/ejoc.200900911] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
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33
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Nadler A, Hain C, Diederichsen U. Histidine Analog Amino Acids Providing Metal-Binding Sites Derived from Bioinorganic Model Systems. European J Org Chem 2009. [DOI: 10.1002/ejoc.200900472] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
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34
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Burck S, van Assema SG, Lastdrager B, Slootweg JC, Ehlers A, Otero J, Dacunha-Marinho B, Llamas-Saiz A, Overhand M, van Raaij M, Lammertsma K. Bisphosphine-Functionalized Cyclic Decapeptides Based on the Natural Product Gramicidin S: A Potential Scaffold for Transition-Metal Coordination. Chemistry 2009; 15:8134-45. [DOI: 10.1002/chem.200901127] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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35
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Wieczorek B, Dijkstra HP, Egmond MR, Klein Gebbink RJ, van Koten G. Incorporating ECE-pincer metal complexes as functional building blocks in semisynthetic metalloenzymes, supramolecular polypeptide hybrids, tamoxifen derivatives, biomarkers and sensors. J Organomet Chem 2009. [DOI: 10.1016/j.jorganchem.2008.12.010] [Citation(s) in RCA: 53] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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36
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Kudo K, Furutani M, Sakamoto S. Cyclo[-His-His-] Derived C2-Symmetric Diketopiperazine as Chiral Ligand for Asymmetric Diels-Alder Reactions. HETEROCYCLES 2009. [DOI: 10.3987/com-08-11604] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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37
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Laungani AC, Slattery JM, Krossing I, Breit B. Supramolecular bidentate ligands by metal-directed in situ formation of antiparallel beta-sheet structures and application in asymmetric catalysis. Chemistry 2008; 14:4488-502. [PMID: 18449870 DOI: 10.1002/chem.200800359] [Citation(s) in RCA: 92] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Abstract
The principles of protein structure design, molecular recognition, and supramolecular and combinatorial chemistry have been applied to develop a convergent metal-ion-assisted self-assembly approach that is a very simple and effective method for the de novo design and the construction of topologically predetermined antiparallel beta-sheet structures and self-assembled catalysts. A new concept of in situ generation of bidentate P-ligands for transition-metal catalysis, in which two complementary, monodentate, peptide-based ligands are brought together by employing peptide secondary structure motif as constructing tool to direct the self-assembly process, is achieved through formation of stable beta-sheet motifs and subsequent control of selectivity. The supramolecular structures were studied by (1)H, (31)P, and (13)C NMR spectroscopy, ESI mass spectrometry, X-ray structure analysis, and theoretical calculations. Our initial catalysis results confirm the close relationship between the self-assembled sheet conformations and the catalytic activity of these metallopeptides in the asymmetric rhodium-catalyzed hydroformylation. Good catalyst activity and moderate enantioselectivity were observed for the selected combination of catalyst and substrate, but most importantly the concept of this new methodology was successfully proven. This work presents a perspective interface between protein design and supramolecular catalysis for the design of beta-sheet mimetics and screening of libraries of self-organizing supramolecular catalysts.
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Affiliation(s)
- Andy C Laungani
- Institut für Organische Chemie und Biochemie, Albert-Ludwigs-Universität Freiburg, Freiburg, Germany
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38
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Goudriaan PE, van Leeuwen PWNM, Birkholz M, Reek JNH. Libraries of Bidentate Phosphorus Ligands; Synthesis Strategies and Application in Catalysis. Eur J Inorg Chem 2008. [DOI: 10.1002/ejic.200800139] [Citation(s) in RCA: 95] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- P. Elsbeth Goudriaan
- Homogeneous and Supramolecular Catalysis, Van 't Hoff Institute for Molecular Sciences, Nieuwe Achtergracht 166, 1018 WV Amsterdam, The Netherlands
| | - Piet W. N. M. van Leeuwen
- Homogeneous and Supramolecular Catalysis, Van 't Hoff Institute for Molecular Sciences, Nieuwe Achtergracht 166, 1018 WV Amsterdam, The Netherlands
| | - Mandy‐Nicole Birkholz
- Homogeneous and Supramolecular Catalysis, Van 't Hoff Institute for Molecular Sciences, Nieuwe Achtergracht 166, 1018 WV Amsterdam, The Netherlands
| | - Joost N. H. Reek
- Homogeneous and Supramolecular Catalysis, Van 't Hoff Institute for Molecular Sciences, Nieuwe Achtergracht 166, 1018 WV Amsterdam, The Netherlands
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Laungani AC, Breit B. Supramolecular PhanePhos-analogous ligands through hydrogen-bonding for asymmetric hydrogenation. Chem Commun (Camb) 2007:844-6. [PMID: 18253523 DOI: 10.1039/b716529c] [Citation(s) in RCA: 83] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
PhanePhos-analogous phosphorous ligands have been generated via self-assembly through hydrogen-bonding, and studied in rhodium-catalyzed asymmetric hydrogenation (up to 99% ee).
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Affiliation(s)
- Andy Ch Laungani
- Institut für Organische Chemie und Biochemie, Albert-Ludwigs-Universität Freiburg, Albertstrasse 21, Freiburg, Germany
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40
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Ciardi C, Romerosa A, Serrano-Ruiz M, Gonsalvi L, Peruzzini M, Reginato G. Synthesis of New Enantiomerically Enriched β-Hydroxy-γ-amino Phosphines by Selective Transformation of Naturally Occurring Amino Acids. J Org Chem 2007; 72:7787-9. [PMID: 17784771 DOI: 10.1021/jo070915x] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Ring opening of amino epoxides derived from naturally occurring amino acids with lithium diphenylphosphido borane is reported as an efficient approach to a new family of enantiomerically enriched multifunctional phosphines.
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Affiliation(s)
- Chiara Ciardi
- Area de Química InorgAnica, Facultad de Ciencias Experimentales, Universidad de Almería, 04071 Almería, Spain
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41
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de Vries JG, Lefort L. The combinatorial approach to asymmetric hydrogenation: phosphoramidite libraries, ruthenacycles, and artificial enzymes. Chemistry 2007; 12:4722-34. [PMID: 16502451 DOI: 10.1002/chem.200500819] [Citation(s) in RCA: 123] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
For a more general implementation of asymmetric catalysis in the production of fine chemicals, the screening for new catalysts and ligands must be dramatically accelerated. This is possible with a high-throughput experimentation (HTE) approach. However, implementation of this technology requires the rapid preparation of libraries of ligands/catalysts and consequently dictates the use of simple ligands that can be readily synthesised in a robot. In this concept article, we describe how the development of new ligands based on monodentate phosphoramidites enabled the development of an integral HTE protocol for asymmetric hydrogenation. This "instant ligand library" protocol makes it possible to synthesise 96 ligands in one day and screen them the next day. Further diversity is possible by using mixtures of monodentate ligands. This concept has already led to an industrial application. Other concepts, still under development, are based on chiral ruthenacycles as new transfer hydrogenation catalysts and the use of enzymes as ligands for transition-metal complexes.
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Affiliation(s)
- Johannes G de Vries
- DSM Research, Life Sciences - Advanced Synthesis, Catalysis & Development, P.O. Box 18, 6160 MD Geleen, The Netherlands.
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42
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Meyer C, Scherer M, Schönberg H, Rüegger H, Loss S, Gramlich V, Grützmacher H. Coordination chemistry of phosphanyl amino acids: solid state and solution structures of neutral and cationic rhodium complexes. Dalton Trans 2006:137-48. [PMID: 16357969 DOI: 10.1039/b512653c] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Copper phosphide or arsenide complexes, [Cu(EPh(2))(neo)] (E = P, As, neo = 2,9-dimethyl-1,10-phenanthroline; trivial name: neocuprine) react selectively with the N-protected brominated serine derivatives, 2-(S)-(alkoxycarbonylamino)-3-bromomethylpropionates ((ROCO)SerBr, : R = PhCH(2), : tBu, : Me) to give the corresponding phosphanylated or arsanylated amino acids, (ROCO)SerPhos (: Phos = PPh(2)) and (Z)SerArs (Ars = AsPh(2), Z = PhCH(2)OCO). The dipeptide (Z)AlaSerPhos was likewise prepared. The phosphanes , and the arsane reacted cleanly with [Rh(2)(micro-Cl)(2)(cod)(2)] to give the rhodium(I) complexes [RhCl(cod)((Z)SerPhos)] , [RhCl(cod)((Boc)SerPhos)] (Boc = tBuOCO), [RhCl(cod)((Z)AlaSerPhos)] , and [RhCl(cod)((Z)SerArs)] which were characterized by X-ray diffraction studies. A common structural feature is an intramolecular (N)H[dot dot dot]Cl(Rh)-hydrogen bridge which according to NMR investigations remains intact in solution. The abstraction of chloride from the coordination sphere of Rh(I) in or has a profound structural impact. While in and , the ligands bind in a monodentate fashion, via the phosphorus atom only, they serve as bidentate ligands via the phosphorus centre and the peptidic C=O group in [Rh(cod)(kappa(2)-(Z)SerPhos)]PF(6) and [Rh(cod)(kappa(2)-(Z)AlaSerPhos)]PF(6). This causes also the amino acid residue structures to change from alpha-helix type in and to a beta-sheet type in both. Addition of chloride to and fully re-establishes the structures of both. The complexes [RhCl(cod)((Z)SerPhos)] and [RhCl(cod)((Boc)SerPhos)] show good activities in homogeneously catalyzed hydrogenations of olefins while the dipeptide complex is less active. Phosphane addition to greatly diminishes the catalytic activity. The cationic complex [Rh(cod)(kappa(2)-(Z)AlaSerPhos)]PF(6) shows low activity which, however, is greatly increased by addition of one equivalent of phosphane.
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Affiliation(s)
- Christian Meyer
- Laboratory of Inorganic Chemistry, Department of Chemistry and Applied Biosciences, ETH Hönggerberg, HCI H131, CH-8093, Zürich, Switzerland
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Christensen CA, Meldal M. Efficient Solid-Phase Synthesis of Peptide-Based Phosphine Ligands: Towards Combinatorial Libraries of Selective Transition Metal Catalysts. Chemistry 2005; 11:4121-31. [PMID: 15861474 DOI: 10.1002/chem.200500105] [Citation(s) in RCA: 46] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Abstract
A new methodology for the solid-phase synthesis of peptide-based phosphine ligands has been developed. Solid supported peptide scaffolds possessing either primary or secondary amines were synthesised using commercially available Fmoc-protected amino acids and readily available Fmoc-protected amino aldehydes for reductive alkylation, in standard solid-phase peptide synthesis (SPPS). Phosphine moieties were introduced by phosphinomethylation of the free amines as the final solid-phase synthetic step, immediately prior to complexation with palladium(II), thus avoiding tedious protection/deprotection of the phosphine moieties during the synthesis of the ligands. The extensive use of commercial building blocks and standard SPPS makes this methodology well suited for the generation of solid-phase combinatorial libraries of novel ligands. Furthermore, it is possible to generate several different phosphine ligand libraries for every peptide scaffold library synthesised, by functionalising the scaffold libraries with different phosphine moieties. The synthesised ligands were characterised on solid support by conventional (31)P NMR spectroscopy and, cleaved from the support, as their phosphine oxides by HPLC, (1)H NMR, (31)P NMR and high resolution ESMS. Palladium(II) allyl complexes were generated from the resin bound ligands and to demonstrate their catalytic properties, palladium catalysed asymmetric allylic substitution reactions were performed. Good yields and moderate enantioselectivity was obtained for the selected combination of catalysts and substrate, but most importantly the concept of this new methodology was proven. Screening of ligand libraries should afford more selective catalysts.
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