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García-Domínguez P, Areal A, Alvarez R, de Lera AR. Chemical synthesis in competition with global genome mining and heterologous expression for the preparation of dimeric tryptophan-derived 2,5-dioxopiperazines. Nat Prod Rep 2022; 39:1172-1225. [PMID: 35470828 DOI: 10.1039/d2np00006g] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
Covering: up to the end of 2021Within the 2,5-dioxopiperazines-containing natural products, those generated from tryptophan allow further structural diversification due to the rich chemical reactivity of the indole heterocycle. The great variety of natural products, ranging from simple dimeric bispyrrolidinoindoline dioxopiperazines and tryptophan-derived dioxopiperazine/pyrrolidinoindoline dioxopiperazine analogs to complex polycyclic downstream metabolites containing transannular connections between the subunits, will be covered. These natural products are constructed by Nature using hybrid polyketide synthase (PKS) and nonribosomal peptide synthetase (NRPS) assembly lines. Mining of microbial genome sequences has more recently allowed the study of the metabolic routes and the discovery of their hidden biosynthetic potential. The competition (ideally, also the combined efforts) between their isolation from the cultures of the producing microorganisms after global genome mining and heterologous expression and the synthetic campaigns, has more recently allowed the successful generation and structural confirmation of these natural products. Their biological activities as well as their proposed biogenetic routes and computational studies on biogenesis will also be covered.
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Affiliation(s)
| | - Andrea Areal
- CINBIO and Universidade de Vigo, 36310 Vigo, Spain.
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2
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Washington Denton R, Kempf A, Singh J, C. Merrer D. A Facile Synthesis of 4-Substituted Glutamate Derivative via 1,3-Dipolar Cycloaddition of Dimethyl 2- Methyleneglutarate and Nitrone Derived (-)-Menthone. HETEROCYCLES 2020. [DOI: 10.3987/com-19-14173] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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3
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Hirai T, Shibata K, Niwano Y, Shiozaki M, Hashimoto Y, Morita N, Ban S, Tamura O. Total Synthesis of Neodysiherbaine A via 1,3-Dipolar Cycloaddition of a Chiral Nitrone Template. Org Lett 2017; 19:6320-6323. [PMID: 29155598 DOI: 10.1021/acs.orglett.7b03092] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The total synthesis of neodysiherbaine A was achieved via 1,3-dipolar cycloaddition of a chiral nitrone template with a sugar-derived allyl alcohol in the presence of MgBr2·OEt2. This cycloaddition constructed the C2 and C4 asymmetric centers in a single step. Then reductive cleavage, intramolecular SN2 reaction of the tertiary alcohol, and oxidation of the primary alcohol afforded neodysiherbaine A.
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Affiliation(s)
- Toshihiro Hirai
- Showa Pharmaceutical University , Higashi-Tamagawagakuen, Machida, Tokyo 194-8543, Japan
| | - Kohki Shibata
- Showa Pharmaceutical University , Higashi-Tamagawagakuen, Machida, Tokyo 194-8543, Japan
| | - Yohei Niwano
- Showa Pharmaceutical University , Higashi-Tamagawagakuen, Machida, Tokyo 194-8543, Japan
| | - Masao Shiozaki
- Showa Pharmaceutical University , Higashi-Tamagawagakuen, Machida, Tokyo 194-8543, Japan
| | - Yoshimitsu Hashimoto
- Showa Pharmaceutical University , Higashi-Tamagawagakuen, Machida, Tokyo 194-8543, Japan
| | - Nobuyoshi Morita
- Showa Pharmaceutical University , Higashi-Tamagawagakuen, Machida, Tokyo 194-8543, Japan
| | - Shintaro Ban
- Showa Pharmaceutical University , Higashi-Tamagawagakuen, Machida, Tokyo 194-8543, Japan
| | - Osamu Tamura
- Showa Pharmaceutical University , Higashi-Tamagawagakuen, Machida, Tokyo 194-8543, Japan
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4
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Indole-Indole Ullmann Cross-Coupling for CAr
-N Bond Formation: Total Synthesis of (-)-Aspergilazine A. European J Org Chem 2017. [DOI: 10.1002/ejoc.201700842] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
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Adrian J, Gross LJ, Stark CBW. The direct oxidative diene cyclization and related reactions in natural product synthesis. Beilstein J Org Chem 2016; 12:2104-2123. [PMID: 27829917 PMCID: PMC5082725 DOI: 10.3762/bjoc.12.200] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2016] [Accepted: 09/07/2016] [Indexed: 12/17/2022] Open
Abstract
The direct oxidative cyclization of 1,5-dienes is a valuable synthetic method for the (dia)stereoselective preparation of substituted tetrahydrofurans. Closely related reactions start from 5,6-dihydroxy or 5-hydroxyalkenes to generate similar products in a mechanistically analogous manner. After a brief overview on the history of this group of transformations and a survey on mechanistic and stereochemical aspects, this review article provides a summary on applications in natural product synthesis. Moreover, current limitations and future directions in this area of chemistry are discussed.
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Affiliation(s)
- Juliane Adrian
- Fachbereich Chemie, Institut für Organische Chemie, Universität Hamburg, Martin-Luther-King-Platz 6, 20146 Hamburg, Germany
| | - Leona J Gross
- Fachbereich Chemie, Institut für Organische Chemie, Universität Hamburg, Martin-Luther-King-Platz 6, 20146 Hamburg, Germany
| | - Christian B W Stark
- Fachbereich Chemie, Institut für Organische Chemie, Universität Hamburg, Martin-Luther-King-Platz 6, 20146 Hamburg, Germany
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Ganesh V, Sridhar PR, Chandrasekaran S. Synthetic Applications of Carbohydrate-derived Donor-Acceptor Cyclopropanes. Isr J Chem 2016. [DOI: 10.1002/ijch.201500086] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Venkataraman Ganesh
- Department of Organic Chemistry; Indian Institute of Science; Bangalore- 560012 Karnataka India
| | - Perali Ramu Sridhar
- School of Chemistry; University of Hyderabad, Gachibowli; Hyderabad- 500046 Telangana India), Tel.: (+91) 40-6679-4823, Fax: (+91) 40-2301-2460
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Oyama KI, Watanabe N, Yamada T, Suzuki M, Sekiguchi Y, Kondo T, Yoshida K. Efficient and versatile synthesis of 5-O-acylquinic acids with a direct esterification using a p-methoxybenzyl quinate as a key intermediate. Tetrahedron 2015. [DOI: 10.1016/j.tet.2014.08.064] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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8
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Grosso C, Valentão P, Ferreres F, Andrade PB. Bioactive marine drugs and marine biomaterials for brain diseases. Mar Drugs 2014; 12:2539-89. [PMID: 24798925 PMCID: PMC4052305 DOI: 10.3390/md12052539] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2014] [Revised: 04/10/2014] [Accepted: 04/16/2014] [Indexed: 12/19/2022] Open
Abstract
Marine invertebrates produce a plethora of bioactive compounds, which serve as inspiration for marine biotechnology, particularly in drug discovery programs and biomaterials development. This review aims to summarize the potential of drugs derived from marine invertebrates in the field of neuroscience. Therefore, some examples of neuroprotective drugs and neurotoxins will be discussed. Their role in neuroscience research and development of new therapies targeting the central nervous system will be addressed, with particular focus on neuroinflammation and neurodegeneration. In addition, the neuronal growth promoted by marine drugs, as well as the recent advances in neural tissue engineering, will be highlighted.
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Affiliation(s)
- Clara Grosso
- REQUIMTE/Laboratory of Pharmacognosy, Department of Chemistry, Faculty of Pharmacy, University of Porto, Rua de Jorge Viterbo Ferreira, no. 228, 4050-313 Porto, Portugal.
| | - Patrícia Valentão
- REQUIMTE/Laboratory of Pharmacognosy, Department of Chemistry, Faculty of Pharmacy, University of Porto, Rua de Jorge Viterbo Ferreira, no. 228, 4050-313 Porto, Portugal.
| | - Federico Ferreres
- Research Group on Quality, Safety and Bioactivity of Plant Foods, Department of Food Science and Technology, CEBAS (CSIC), P.O. Box 164, Campus University Espinardo, Murcia 30100, Spain.
| | - Paula B Andrade
- REQUIMTE/Laboratory of Pharmacognosy, Department of Chemistry, Faculty of Pharmacy, University of Porto, Rua de Jorge Viterbo Ferreira, no. 228, 4050-313 Porto, Portugal.
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Hatakeyama S. Total Synthesis of Biologically Active Natural Products Based on Highly Selective Synthetic Methodologies. Chem Pharm Bull (Tokyo) 2014; 62:1045-61. [DOI: 10.1248/cpb.c14-00474] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Affiliation(s)
- Susumi Hatakeyama
- Graduate School of Biomedical Sciences, Nagasaki University, 1–14 Bunkyo-machi, Nagasaki 852–8521, Japan
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A compendium of cyclic sugar amino acids and their carbocyclic and heterocyclic nitrogen analogues. Amino Acids 2013; 45:613-89. [DOI: 10.1007/s00726-013-1521-1] [Citation(s) in RCA: 62] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2013] [Accepted: 05/21/2013] [Indexed: 12/19/2022]
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Pullin RDC, Lipiński RM, Donohoe TJ. Oxidative cyclization for the synthesis of complex tetrahydrofuran-containing natural products. PURE APPL CHEM 2013. [DOI: 10.1351/pac-con-12-10-25] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
The osmium-catalyzed oxidative cyclization of vicinal diols onto proximal olefins to generate 2,5-cis-substituted tetrahydrofurans (THFs) has been exploited as the key step for the construction of several complex THF-containing natural products, namely, the annonaceous acetogenins cis-sylvaticin, sylvaticin, and the excitatory amino acid neo-dysiherbaine A. Recently modified conditions that employ a Lewis acid enable the cyclization to proceed under milder conditions, providing greater tolerance to acid-sensitive functional groups, as demonstrated in two of the syntheses. Flexibility for the construction of 2,5-trans-THFs was demonstrated in the synthesis of sylvaticin by utilization of an intramolecular hydride-shift sequence.
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Affiliation(s)
- Robert D. C. Pullin
- 1Department of Chemistry, University of Oxford, Chemistry Research Laboratory, Mansfield Road, Oxford, OX1 3TA, UK
| | - Radosław M. Lipiński
- 1Department of Chemistry, University of Oxford, Chemistry Research Laboratory, Mansfield Road, Oxford, OX1 3TA, UK
| | - Timothy J. Donohoe
- 1Department of Chemistry, University of Oxford, Chemistry Research Laboratory, Mansfield Road, Oxford, OX1 3TA, UK
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14
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Lee HY, Lee SS, Kim HS, Lee KM. A Formal Total Synthesis of Dysiherbaine and Neodysiherbaine A. European J Org Chem 2012. [DOI: 10.1002/ejoc.201200439] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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15
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Takahashi K, Yamaguchi D, Ishihara J, Hatakeyama S. Total Synthesis of (−)-Kaitocephalin Based on a Rh-Catalyzed C–H Amination. Org Lett 2012; 14:1644-7. [DOI: 10.1021/ol300431n] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Keisuke Takahashi
- Graduate School of Biomedical Sciences, Nagasaki University, Nagasaki, 852-8521, Japan
| | - Daisuke Yamaguchi
- Graduate School of Biomedical Sciences, Nagasaki University, Nagasaki, 852-8521, Japan
| | - Jun Ishihara
- Graduate School of Biomedical Sciences, Nagasaki University, Nagasaki, 852-8521, Japan
| | - Susumi Hatakeyama
- Graduate School of Biomedical Sciences, Nagasaki University, Nagasaki, 852-8521, Japan
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16
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Donohoe TJ, Pullin RDC. Natural product synthesis as a challenging test of newly developed methodology. Chem Commun (Camb) 2012; 48:11924-38. [DOI: 10.1039/c2cc36040c] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
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Donohoe TJ, Winship PCM, Tatton MR, Szeto P. A Short and Efficient Synthesis of Neodysiherbaine A by Using Catalytic Oxidative Cyclization. Angew Chem Int Ed Engl 2011. [DOI: 10.1002/ange.201102525] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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18
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Donohoe TJ, Winship PCM, Tatton MR, Szeto P. A Short and Efficient Synthesis of Neodysiherbaine A by Using Catalytic Oxidative Cyclization. Angew Chem Int Ed Engl 2011; 50:7604-6. [DOI: 10.1002/anie.201102525] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2011] [Indexed: 11/10/2022]
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Cottin T, Pyrkotis C, Stathakis CI, Mavridis I, Katsoulis IA, Anastasopoulou P, Kythreoti G, Zografos AL, Nahmias VR, Papakyriakou A, Vourloumis D. Designed Spiro-Bicyclic Analogues Targeting the Ribosomal Decoding Center. Chembiochem 2010; 12:71-87. [DOI: 10.1002/cbic.201000591] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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20
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Zhao J, Wei S, Ma X, Shao H. A simple and convenient method for the synthesis of pyranoid glycals. Carbohydr Res 2010; 345:168-71. [DOI: 10.1016/j.carres.2009.10.003] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2009] [Revised: 09/30/2009] [Accepted: 10/12/2009] [Indexed: 11/25/2022]
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Swanson GT, Sakai R. Ligands for ionotropic glutamate receptors. PROGRESS IN MOLECULAR AND SUBCELLULAR BIOLOGY 2009; 46:123-57. [PMID: 19184587 PMCID: PMC2901239 DOI: 10.1007/978-3-540-87895-7_5] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
Marine-derived small molecules and peptides have played a central role in elaborating pharmacological specificities and neuronal functions of mammalian ionotropic glutamate receptors (iGluRs), the primary mediators of excitatory synaptic transmission in the central nervous system (CNS). As well, the pathological sequelae elicited by one class of compounds (the kainoids) constitute a widely-used animal model for human mesial temporal lobe epilepsy (mTLE). New and existing molecules could prove useful as lead compounds for the development of therapeutics for neuropathologies that have aberrant glutamatergic signaling as a central component. In this chapter we discuss natural source origins and pharmacological activities of those marine compounds that target ionotropic glutamate receptors.
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MESH Headings
- Alanine/analogs & derivatives
- Alanine/pharmacology
- Amino Acids/physiology
- Animals
- Bridged Bicyclo Compounds, Heterocyclic/pharmacology
- Kainic Acid/metabolism
- Kainic Acid/pharmacology
- Ligands
- Mammals
- Mollusk Venoms/pharmacology
- Mollusk Venoms/toxicity
- Receptors, AMPA/drug effects
- Receptors, AMPA/physiology
- Receptors, Kainic Acid/agonists
- Receptors, Kainic Acid/drug effects
- Receptors, Kainic Acid/physiology
- Receptors, N-Methyl-D-Aspartate/drug effects
- Receptors, N-Methyl-D-Aspartate/physiology
- Receptors, Opioid, delta/physiology
- GluK2 Kainate Receptor
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Affiliation(s)
- Geoffrey T Swanson
- Department of Molecular Pharmacology and Biological Chemistry, Northwestern University, Feinberg School of Medicine, 303 E. Chicago Ave., Chicago, IL 60611, USA.
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Schmidt B, Biernat A. Synthesis of 3-Deoxy Glycals via Tandem Metathesis Sequences and Their Use in an Intermolecular Heck Arylation. European J Org Chem 2008. [DOI: 10.1002/ejoc.200800824] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
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Takahashi K, Matsumura T, Ishihara J, Hatakeyama S. A highly stereocontrolled total synthesis of dysiherbaine. Chem Commun (Camb) 2007:4158-60. [DOI: 10.1039/b709627e] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Sasaki M, Tsubone K, Shoji M, Oikawa M, Shimamoto K, Sakai R. Design, total synthesis, and biological evaluation of neodysiherbaine A derivative as potential probes. Bioorg Med Chem Lett 2006; 16:5784-7. [PMID: 16949819 DOI: 10.1016/j.bmcl.2006.08.082] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2006] [Revised: 08/14/2006] [Accepted: 08/17/2006] [Indexed: 10/24/2022]
Abstract
To enable studies to elucidate the detailed biological function of dysiherbaine and neodysiherbaine A, potent and subunit-selective agonists for ionotropic glutamate receptors, the derivative with a hydroxymethyl substituent at the C10 position has been developed. Preliminary biological evaluation of the analogue showed that a C10 hydroxymethyl substituent produced significant alterations in binding affinities for the ionotropic glutamate receptor subtypes.
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Affiliation(s)
- Makoto Sasaki
- Laboratory of Biostructural Chemistry, Graduate School of Life Sciences, Tohoku University, Sendai 981-8555, Japan.
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