1
|
Simonini Steiner YT, Romano GM, Massai L, Lippi M, Paoli P, Rossi P, Savastano M, Bencini A. Pyrene-Containing Polyamines as Fluorescent Receptors for Recognition of PFOA in Aqueous Media. Molecules 2023; 28:4552. [PMID: 37299033 PMCID: PMC10254721 DOI: 10.3390/molecules28114552] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2023] [Revised: 05/25/2023] [Accepted: 06/01/2023] [Indexed: 06/12/2023] Open
Abstract
The globally widespread perfluorooctanoic acid (PFOA) is a concerning environmental contaminant, with a possible toxic long-term effects on the environment and human health The development of sensible, rapid, and low-cost detection systems is a current change in modern environmental chemistry. In this context, two triamine-based chemosensors, L1 and L2, containing a fluorescent pyrene unit, and their Zn(II) complexes are proposed as fluorescent probes for the detection of PFOA in aqueous media. Binding studies carried out by means of fluorescence and NMR titrations highlight that protonated forms of the receptors can interact with the carboxylate group of PFOA, thanks to salt bridge formation with the ammonium groups of the aliphatic chain. This interaction induces a decrease in the fluorescence emission of pyrene at neutral and slightly acidic pH values. Similarly, emission quenching has also been observed upon coordination of PFOA by the Zn(II) complexes of the receptors. These results evidence that simple polyamine-based molecular receptors can be employed for the optical recognition of harmful pollutant molecules, such as PFOA, in aqueous media.
Collapse
Affiliation(s)
- Yschtar Tecla Simonini Steiner
- Department of Chemistry “Ugo Schiff”, Università degli Studi di Firenze, Via della Lastruccia 3, Sesto Fiorentino, 50019 Firenze, Italy; (Y.T.S.S.); (L.M.); (M.S.)
| | - Giammarco Maria Romano
- Department of Chemistry “Ugo Schiff”, Università degli Studi di Firenze, Via della Lastruccia 3, Sesto Fiorentino, 50019 Firenze, Italy; (Y.T.S.S.); (L.M.); (M.S.)
| | - Lara Massai
- Department of Chemistry “Ugo Schiff”, Università degli Studi di Firenze, Via della Lastruccia 3, Sesto Fiorentino, 50019 Firenze, Italy; (Y.T.S.S.); (L.M.); (M.S.)
| | - Martina Lippi
- Department of Industrial Engineering, Università di Firenze, Via Santa Marta 3, 50139 Firenze, Italy; (M.L.); (P.P.); (P.R.)
| | - Paola Paoli
- Department of Industrial Engineering, Università di Firenze, Via Santa Marta 3, 50139 Firenze, Italy; (M.L.); (P.P.); (P.R.)
| | - Patrizia Rossi
- Department of Industrial Engineering, Università di Firenze, Via Santa Marta 3, 50139 Firenze, Italy; (M.L.); (P.P.); (P.R.)
| | - Matteo Savastano
- Department of Chemistry “Ugo Schiff”, Università degli Studi di Firenze, Via della Lastruccia 3, Sesto Fiorentino, 50019 Firenze, Italy; (Y.T.S.S.); (L.M.); (M.S.)
| | - Andrea Bencini
- Department of Chemistry “Ugo Schiff”, Università degli Studi di Firenze, Via della Lastruccia 3, Sesto Fiorentino, 50019 Firenze, Italy; (Y.T.S.S.); (L.M.); (M.S.)
| |
Collapse
|
2
|
Sivagnanam S, Mahato P, Das P. An overview on the development of different optical sensing platforms for adenosine triphosphate (ATP) recognition. Org Biomol Chem 2023; 21:3942-3983. [PMID: 37128980 DOI: 10.1039/d3ob00209h] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
Abstract
Adenosine triphosphate (ATP), one of the biological anions, plays a crucial role in several biological processes including energy transduction, cellular respiration, enzyme catalysis and signaling. ATP is a bioactive phosphate molecule, recognized as an important extracellular signaling agent. Apart from serving as a universal energy currency for various cellular events, ATP is also considered a factor responsible for numerous physiological activities. It regulates cellular metabolism by breaking phosphoanhydride bonds. Several diseases have been reported widely based on the levels and behavior of ATP. The variation of ATP concentration usually causes a foreseeable impact on mitochondrial physiological function. Mitochondrial dysfunction is responsible for the occurrence of many severe diseases such as angiocardiopathy, malignant tumors and Parkinson's disease. Therefore, there is high demand for developing a sensitive, fast-responsive, nontoxic and versatile detection platform for the detection of ATP. To this end, considerable efforts have been employed by several research groups throughout the world to develop specific and sensitive detection platforms to recognize ATP. Although a repertoire of optical chemosensors (both colorimetric and fluorescent) for ATP has been developed, many of them are not arrayed appropriately. Therefore, in this present review, we focused on the design and sensing strategy of some chemosensors including metal-free, metal-based, sequential sensors, aptamer-based sensors, nanoparticle-based sensors etc. for ATP recognition via diverse binding mechanisms.
Collapse
Affiliation(s)
- Subramaniyam Sivagnanam
- Department of Chemistry, SRM Institute of Science and Technology, SRM Nagar, Potheri, Kattankulathur, Tamil Nadu-603203, India.
| | - Prasenjit Mahato
- Department of Chemistry, Raghunathpur College, Sidho-Kanho-Birsha University, Purulia, West Bengal-723133, India
| | - Priyadip Das
- Department of Chemistry, SRM Institute of Science and Technology, SRM Nagar, Potheri, Kattankulathur, Tamil Nadu-603203, India.
| |
Collapse
|
3
|
Krämer J, Kang R, Grimm LM, De Cola L, Picchetti P, Biedermann F. Molecular Probes, Chemosensors, and Nanosensors for Optical Detection of Biorelevant Molecules and Ions in Aqueous Media and Biofluids. Chem Rev 2022; 122:3459-3636. [PMID: 34995461 PMCID: PMC8832467 DOI: 10.1021/acs.chemrev.1c00746] [Citation(s) in RCA: 100] [Impact Index Per Article: 50.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Abstract
Synthetic molecular probes, chemosensors, and nanosensors used in combination with innovative assay protocols hold great potential for the development of robust, low-cost, and fast-responding sensors that are applicable in biofluids (urine, blood, and saliva). Particularly, the development of sensors for metabolites, neurotransmitters, drugs, and inorganic ions is highly desirable due to a lack of suitable biosensors. In addition, the monitoring and analysis of metabolic and signaling networks in cells and organisms by optical probes and chemosensors is becoming increasingly important in molecular biology and medicine. Thus, new perspectives for personalized diagnostics, theranostics, and biochemical/medical research will be unlocked when standing limitations of artificial binders and receptors are overcome. In this review, we survey synthetic sensing systems that have promising (future) application potential for the detection of small molecules, cations, and anions in aqueous media and biofluids. Special attention was given to sensing systems that provide a readily measurable optical signal through dynamic covalent chemistry, supramolecular host-guest interactions, or nanoparticles featuring plasmonic effects. This review shall also enable the reader to evaluate the current performance of molecular probes, chemosensors, and nanosensors in terms of sensitivity and selectivity with respect to practical requirement, and thereby inspiring new ideas for the development of further advanced systems.
Collapse
Affiliation(s)
- Joana Krämer
- Institute
of Nanotechnology, Karlsruhe Institute of
Technology (KIT), Hermann-von-Helmholtz Platz 1, 76344 Eggenstein-Leopoldshafen, Germany
| | - Rui Kang
- Institute
of Nanotechnology, Karlsruhe Institute of
Technology (KIT), Hermann-von-Helmholtz Platz 1, 76344 Eggenstein-Leopoldshafen, Germany
| | - Laura M. Grimm
- Institute
of Nanotechnology, Karlsruhe Institute of
Technology (KIT), Hermann-von-Helmholtz Platz 1, 76344 Eggenstein-Leopoldshafen, Germany
| | - Luisa De Cola
- Institute
of Nanotechnology, Karlsruhe Institute of
Technology (KIT), Hermann-von-Helmholtz Platz 1, 76344 Eggenstein-Leopoldshafen, Germany
- Dipartimento
DISFARM, University of Milano, via Camillo Golgi 19, 20133 Milano, Italy
- Department
of Molecular Biochemistry and Pharmacology, Instituto di Ricerche Farmacologiche Mario Negri, IRCCS, 20156 Milano, Italy
| | - Pierre Picchetti
- Institute
of Nanotechnology, Karlsruhe Institute of
Technology (KIT), Hermann-von-Helmholtz Platz 1, 76344 Eggenstein-Leopoldshafen, Germany
- P.P.: email,
| | - Frank Biedermann
- Institute
of Nanotechnology, Karlsruhe Institute of
Technology (KIT), Hermann-von-Helmholtz Platz 1, 76344 Eggenstein-Leopoldshafen, Germany
- F.B.: email,
| |
Collapse
|
4
|
Fluorescent Chemosensors Based on Polyamine Ligands: A Review. CHEMOSENSORS 2021. [DOI: 10.3390/chemosensors10010001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
Polyamine ligands are water-soluble receptors that are able to coordinate, depending on their protonation degree, either metal ions, anionic, or neutral species. Furthermore, the presence of fluorescent signaling units allows an immediate visual response/signal. For these reasons, they can find applications in a wide variety of fields, mainly those where aqueous media is necessary, such as biological studies, wastewater analysis, soil contamination, etc. This review provides an overview of the recent developments in the research of chemosensors based on polyamine ligands functionalized with fluorescent signaling units. The discussion focuses on the design, synthesis, and physicochemical properties of this type of fluorescent chemosensors in order to analyze the applications associated to the sensing of metal ions, anions, and neutral molecules of environmental and/or biological interest. To facilitate a quick access and overview of all the chemosensors covered in this review, a summary table of the chemosensor structures and analytes, with all the corresponding references, is also presented.
Collapse
|
5
|
Ferguson Johns HP, Harrison EE, Stingley KJ, Waters ML. Mimicking Biological Recognition: Lessons in Binding Hydrophilic Guests in Water. Chemistry 2021; 27:6620-6644. [PMID: 33048395 DOI: 10.1002/chem.202003759] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2020] [Indexed: 01/25/2023]
Abstract
Selective molecular recognition of hydrophilic guests in water plays a fundamental role in a vast number of biological processes, but synthetic mimicry of biomolecular recognition in water still proves challenging both in terms of achieving comparable affinities and selectivities. This Review highlights strategies that have been developed in the field of supramolecular chemistry to selectively and non-covalently bind three classes of biologically relevant molecules: nucleotides, carbohydrates, and amino acids. As several groups have systematically modified receptors for a specific guest, an evolutionary perspective is also provided in some cases. Trends in the most effective binding forces for each class are described, providing insight into selectivity and potential directions for future work.
Collapse
Affiliation(s)
- Hannah P Ferguson Johns
- Department of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, NC, 27599, USA
| | - Emily E Harrison
- Department of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, NC, 27599, USA
| | - Kyla J Stingley
- Department of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, NC, 27599, USA
| | - Marcey L Waters
- Department of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, NC, 27599, USA
| |
Collapse
|
6
|
Agafontsev AM, Shumilova TA, Oshchepkov AS, Hampel F, Kataev EA. Ratiometric Detection of ATP by Fluorescent Cyclophanes with Bellows-Type Sensing Mechanism. Chemistry 2020; 26:9991-9997. [PMID: 32497327 PMCID: PMC7496914 DOI: 10.1002/chem.202001523] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2020] [Revised: 06/01/2020] [Indexed: 12/13/2022]
Abstract
Pyrene-based cyclophanes have been synthesized with the aim to realize a bellows-type sensing mechanism for the ratiometric detection of nucleotide concentrations in a buffered aqueous solution. The sensing mechanism involves the encapsulation of a nucleobase between two pyrene rings, which affects the monomer-excimer equilibrium of the receptor in the excited state. The nature of the spacer and its connection pattern to pyrene rings have been varied to achieve high selectivity for ATP. The 1,8-substituted pyrene-based cyclophane with the 2,2'-diaminodiethylamine spacer demonstrates the best selectivity for ATP showing a 50-fold increase in the monomer-excimer emission ratio upon saturation with the nucleotide. The receptor can detect ATP within the biological concentrations range over a wide pH range. NMR and spectroscopic studies have revealed the importance of hydrogen bonding and stacking interactions for achieving a required receptor selectivity. The probe has been successfully applied for the real-time monitoring of creatine kinase activity.
Collapse
Affiliation(s)
- Aleksandr M. Agafontsev
- N. N. Vorozhtsov Institute of Organic Chemistry SB RAS9 Lavrentiev Avenue630090NovosibirskRussian Federation
- Institute of ChemistryTechnische Universität Chemnitz09107ChemnitzGermany
| | | | | | - Frank Hampel
- Department of Chemistry and PharmacyUniversity of Erlangen-NürnbergNikolaus-Fiebiger-Str. 1091058ErlangenGermany
| | - Evgeny A. Kataev
- Department of Chemistry and PharmacyUniversity of Erlangen-NürnbergNikolaus-Fiebiger-Str. 1091058ErlangenGermany
| |
Collapse
|
7
|
Beyeh NK, Díez I, Taimoory SM, Meister D, Feig AI, Trant JF, Ras RHA, Rissanen K. High-affinity and selective detection of pyrophosphate in water by a resorcinarene salt receptor. Chem Sci 2017; 9:1358-1367. [PMID: 29675184 PMCID: PMC5887233 DOI: 10.1039/c7sc05167k] [Citation(s) in RCA: 36] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2017] [Accepted: 12/15/2017] [Indexed: 11/21/2022] Open
Abstract
Pyrophosphate (PPi) is a byproduct of DNA and RNA synthesis, and abnormal levels are indicative of disease. We report the high-affinity binding of PPi in water by N-alkyl ammonium resorcinarene chloride receptors. Experimental analysis using 1H and 31P NMR, isothermal titration calorimetry, mass spectrometry, and UV-vis spectroscopy all support exceptional selectivity of these systems for PPi in water. The measured affinity of K1 = 1.60 × 107 M-1 for PPi is three orders of magnitude larger than that observed for binding to another phosphate, ATP. This exceptional anion-binding affinity in water is explored through a detailed density functional theory computational study. These systems provide a promising avenue for the development of future innovative medical diagnostic tools.
Collapse
Affiliation(s)
- Ngong Kodiah Beyeh
- Aalto University , School of Science , Department of Applied Physics , Puumiehenkuja 2 , FI-02150 , Espoo , Finland . ; .,University of Windsor , Department of Chemistry and Biochemistry , Windsor , ON N9B 3P4 , Canada .
| | - Isabel Díez
- Aalto University , School of Science , Department of Applied Physics , Puumiehenkuja 2 , FI-02150 , Espoo , Finland . ;
| | - S Maryamdokht Taimoory
- University of Windsor , Department of Chemistry and Biochemistry , Windsor , ON N9B 3P4 , Canada .
| | - Daniel Meister
- University of Windsor , Department of Chemistry and Biochemistry , Windsor , ON N9B 3P4 , Canada .
| | - Andrew I Feig
- Wayne State University , Department of Chemistry , 5101 Cass Ave. , Detroit , MI 48202 , USA
| | - John F Trant
- University of Windsor , Department of Chemistry and Biochemistry , Windsor , ON N9B 3P4 , Canada .
| | - Robin H A Ras
- Aalto University , School of Science , Department of Applied Physics , Puumiehenkuja 2 , FI-02150 , Espoo , Finland . ; .,Aalto University , School of Chemical Engineering , Department of Bioproducts and Biosystems , Kemistintie 1 , 02150 Espoo , Finland
| | - Kari Rissanen
- University of Jyvaskyla , Department of Chemistry , P. O. Box 35 , FI-40014 Jyväskylä , Finland .
| |
Collapse
|
8
|
Maity D, Li M, Ehlers M, Gigante A, Schmuck C. A metal-free fluorescence turn-on molecular probe for detection of nucleoside triphosphates. Chem Commun (Camb) 2017; 53:208-211. [PMID: 27918032 DOI: 10.1039/c6cc08386b] [Citation(s) in RCA: 47] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
We report a fluorescence probe 1, which contains a naphthalimide fluorophore with two symmetric peptidic arms equipped with a tailor-made anion-binding motif, the guanidiniocarbonyl pyrrole moiety, for the detection of nucleoside triphosphates. Upon binding to nucleoside triphosphates, especially ATP, 1 shows significant turn-on fluorescence response. Probe 1 can also be applied for the imaging of ATP in cells.
Collapse
Affiliation(s)
- Debabrata Maity
- Institute for Organic Chemistry, University of Duisburg-Essen, 45117, Essen, Germany.
| | - Mao Li
- Institute for Organic Chemistry, University of Duisburg-Essen, 45117, Essen, Germany.
| | - Martin Ehlers
- Institute for Organic Chemistry, University of Duisburg-Essen, 45117, Essen, Germany.
| | | | - Carsten Schmuck
- Institute for Organic Chemistry, University of Duisburg-Essen, 45117, Essen, Germany.
| |
Collapse
|
9
|
Bettoschi A, Ceglie A, Lopez F, Meli V, Murgia S, Tamburro M, Caltagirone C, Cuomo F. On the role of a coumarin derivative for sensing applications: Nucleotide identification using a micellar system. J Colloid Interface Sci 2016; 477:8-15. [PMID: 27236839 DOI: 10.1016/j.jcis.2016.05.034] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2016] [Revised: 05/17/2016] [Accepted: 05/18/2016] [Indexed: 02/03/2023]
Abstract
The recognition of nucleotides is of crucial importance because they are the basic constituents of nucleic acids. The present study is focused on the selective interaction between a novel amphiphilic fluorophore containing coumarin and imidazole, CI (1-methyl-3-(12-((2-oxo-2H-chromen-7-yl)oxy)dodecyl)-1H-imidazol-3-ium bromide), and different nucleotide-monophosphates (NMPs). It was supposed that the solubilization of the low water soluble CI in a micelle system of hexadecyltrimethylammonium chloride (CTAC) would make the coumarin moiety of CI available to the interaction with the water-soluble NMPs. Changes in CTAC critical micelle concentration suggested that CI strongly interacted with the host cationic surfactant, thus forming a positively charged interface enriched with coumarin able to interact with the anionic NMPs. Steady-state fluorescence quenching revealed that CI/CTAC system was capable of distinguish between purine- and pyrimidine-based nucleotides. A modified Stern-Volmer equation permitted the use of a quenching model that accounted for the possible interactions between the micelles and the nucleotides. The data analysis allowed calculating selective parameters that differentiated according to the type of nucleotide either at 25 or 50°C. Our results established the utility of the novel coumarin derivative fluorophore, supported by the simple and suitable micellar systems, as a tool for DNA sensing applications.
Collapse
Affiliation(s)
- Alexandre Bettoschi
- Dipartimento di Scienze Chimiche e Geologiche, Università di Cagliari, CNBS and CSGI, s.s. 554 bivio Sestu, I-09042 Monserrato (CA), Italy
| | - Andrea Ceglie
- Department of Agricultural, Environmental and Food Sciences (DIAAA) and Center for Colloid and Surface Science (CSGI), Università degli Studi del Molise, Via De Sanctis, I-86100 Campobasso, Italy
| | - Francesco Lopez
- Department of Agricultural, Environmental and Food Sciences (DIAAA) and Center for Colloid and Surface Science (CSGI), Università degli Studi del Molise, Via De Sanctis, I-86100 Campobasso, Italy
| | - Valeria Meli
- Dipartimento di Scienze Chimiche e Geologiche, Università di Cagliari, CNBS and CSGI, s.s. 554 bivio Sestu, I-09042 Monserrato (CA), Italy
| | - Sergio Murgia
- Dipartimento di Scienze Chimiche e Geologiche, Università di Cagliari, CNBS and CSGI, s.s. 554 bivio Sestu, I-09042 Monserrato (CA), Italy
| | - Manuela Tamburro
- Department of Medicine and Health Sciences, Università degli Studi del Molise, Via De Sanctis, I-86100 Campobasso, Italy
| | - Claudia Caltagirone
- Dipartimento di Scienze Chimiche e Geologiche, Università di Cagliari, CNBS and CSGI, s.s. 554 bivio Sestu, I-09042 Monserrato (CA), Italy.
| | - Francesca Cuomo
- Department of Agricultural, Environmental and Food Sciences (DIAAA) and Center for Colloid and Surface Science (CSGI), Università degli Studi del Molise, Via De Sanctis, I-86100 Campobasso, Italy.
| |
Collapse
|
10
|
Sigwalt D, Zavalij PY, Isaacs L. Cationic acyclic cucurbit[n]uril-type containers: synthesis and molecular recognition toward nucleotides. Supramol Chem 2016; 28:825-834. [PMID: 27746668 DOI: 10.1080/10610278.2016.1167893] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
We report the synthesis of M2NH3 which is a tetracationic analogue of our prototypical acyclic CB[n]-type molecular container M2. Both M1NH3 and M2NH3 possess excellent solubility in D2O and do not undergo intermolecular self-association processes that would impinge on their molecular recognition properties. Compounds M1NH3 and M2NH3 do, however, undergo an intramolecular self-complexation process driven by ion-dipole interactions between the ureidyl C=O portals and the OCH2CH2NH3 arms along with inclusion of one aromatic wall in its own hydrophobic cavity. The Ka values for M1NH3 and M2NH3 toward seven nucleotides were determined by 1H NMR titration and found to be quite modest (Ka in the 102 - 103 M-1 range) although M2NH3 is slightly more potent. The more highly charged guests (e.g. ATP) form stronger complexes with M1NH3 and M2NH3 than the less highly charged guest (e.g. ADP, AMP). The work highlights the dominant influence of the ureidyl C=O portals on the molecular recognition behavior of acyclic CB[n]-type receptors and suggests routes (e.g. more highly charged arms) to enhance their recognition behavior toward anions.
Collapse
Affiliation(s)
- David Sigwalt
- Department of Chemistry and Biochemistry, University of Maryland, College Park, MD 20742, USA
| | - Peter Y Zavalij
- Department of Chemistry and Biochemistry, University of Maryland, College Park, MD 20742, USA
| | - Lyle Isaacs
- Department of Chemistry and Biochemistry, University of Maryland, College Park, MD 20742, USA
| |
Collapse
|
11
|
Bartoli F, Bencini A, Conti L, Giorgi C, Valtancoli B, Paoli P, Rossi P, Le Bris N, Tripier R. Catching anions with coloured assemblies: binding of pH indicators by a giant-size polyammonium macrocycle for anion naked-eye recognition. Org Biomol Chem 2016; 14:8309-21. [DOI: 10.1039/c6ob01474g] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
Among inorganic anions, only triphosphate displaces bromocresol purple from its assembly with a tetra-cyclam macrocycle, allowing for its selective colorimetric detection.
Collapse
Affiliation(s)
- Francesco Bartoli
- Dipartimento di Chimica ‘Ugo Schiff’
- Università degli Studi di Firenze
- Sesto Fiorentino
- Italy
| | - Andrea Bencini
- Dipartimento di Chimica ‘Ugo Schiff’
- Università degli Studi di Firenze
- Sesto Fiorentino
- Italy
| | - Luca Conti
- Dipartimento di Chimica ‘Ugo Schiff’
- Università degli Studi di Firenze
- Sesto Fiorentino
- Italy
| | - Claudia Giorgi
- Dipartimento di Chimica ‘Ugo Schiff’
- Università degli Studi di Firenze
- Sesto Fiorentino
- Italy
| | - Barbara Valtancoli
- Dipartimento di Chimica ‘Ugo Schiff’
- Università degli Studi di Firenze
- Sesto Fiorentino
- Italy
| | - Paola Paoli
- Dipartimento di Ingegneria Industriale
- Università degli Studi di Firenze
- Firenze
- Italy
| | - Patrizia Rossi
- Dipartimento di Ingegneria Industriale
- Università degli Studi di Firenze
- Firenze
- Italy
| | - Nathalie Le Bris
- UMR-CNRS 6521
- UFR des Sciences et Techniques
- 6 avenue Victor le Gorgeu
- C.S. 93837
- Université de Bretagne Occidentale
| | - Raphael Tripier
- UMR-CNRS 6521
- UFR des Sciences et Techniques
- 6 avenue Victor le Gorgeu
- C.S. 93837
- Université de Bretagne Occidentale
| |
Collapse
|
12
|
González-García J, Tomić S, Lopera A, Guijarro L, Piantanida I, García-España E. Aryl-bis-(scorpiand)-aza receptors differentiate between nucleotide monophosphates by a combination of aromatic, hydrogen bond and electrostatic interactions. Org Biomol Chem 2015; 13:1732-40. [PMID: 25476253 DOI: 10.1039/c4ob02084g] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
Abstract
Bis-polyaza pyridinophane scorpiands bind nucleotides in aqueous medium with 10-100 micromolar affinity, predominantly by electrostatic interactions between nucleotide phosphates and protonated aliphatic amines and assisted by aromatic stacking interactions. The pyridine-scorpiand receptor showed rare selectivity toward CMP with respect to other nucleotides, whereby two orders of magnitude affinity difference between CMP and UMP was the most appealing. The phenanthroline-scorpiand receptor revealed at pH 5 strong selectivity toward AMP with respect to other NMPs, based on the protonation of adenine heterocyclic N1. The results stress that the efficient recognition of small biomolecules within scorpiand-like receptors relies mostly on the electrostatic and H-bonding interactions despite the competitive interactions in the bulk solvent, thus supporting further optimisation of this versatile artificial moiety.
Collapse
Affiliation(s)
- Jorge González-García
- ICMOL, Departamentos de Química Inorgánica y Orgánica, Facultad de Química, Universidad de Valencia, C/Catedrático José Beltrán 2, 46980 Paterna, Valencia, Spain. enrique.garcia-es@ uv.es
| | | | | | | | | | | |
Collapse
|
13
|
Sen B, Mukherjee M, Pal S, Sen S, Chattopadhyay P. A water soluble copper(ii) complex as a HSO4− ion selective turn-on fluorescent sensor applicable in living cell imaging. RSC Adv 2015. [DOI: 10.1039/c5ra09121g] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
A water soluble non-fluorescent biofriendly cell permeable structurally characterised copper(ii) complex (1) selectively senses HSO4− ions as low as 3.18 × 10−7 M in water : DMSO (9 : 1, v/v) HEPES buffer at biological pH.
Collapse
Affiliation(s)
- Buddhadeb Sen
- Department of Chemistry
- Burdwan University
- Burdwan-71 3104
- India
| | | | - Siddhartha Pal
- Department of Chemistry
- Burdwan University
- Burdwan-71 3104
- India
| | - Supriti Sen
- Department of Chemistry
- Burdwan University
- Burdwan-71 3104
- India
| | | |
Collapse
|
14
|
Basaran I, Emami Khansari M, Pramanik A, Wong BM, Hossain MA. Binding and selectivity of dihydrogen phosphate by H-bond donors and acceptors in a tripodal-based thiourea receptor. Tetrahedron Lett 2015. [DOI: 10.1016/j.tetlet.2014.11.025] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
|
15
|
Hu P, Yang S, Feng G. Discrimination of adenine nucleotides and pyrophosphate in water by a zinc complex of an anthracene-based cyclophane. Org Biomol Chem 2014; 12:3701-6. [PMID: 24777701 DOI: 10.1039/c4ob00184b] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
Combining metal-anion coordination and π-π stacking interactions, a zinc complex of a novel anthracene-based cyclophane was designed to recognise adenine nucleoside polyphosphates. This complex was found to show selective fluorescence enhancement for ATP, ADP, AMP and PPi in neutral aqueous solution. Among them, ADP induced the largest fluorescence change to the complex, while ATP showed the strongest binding affinity to the complex. This property was used to sense ATP in the presence of excess amounts of other phosphates such as ADP, AMP, PPi and Pi.
Collapse
Affiliation(s)
- Ping Hu
- Key Laboratory of Pesticide and Chemical Biology of Ministry of Education, College of Chemistry, Central China Normal University, 152 Luoyu Road, Wuhan 430079, P. R. China.
| | | | | |
Collapse
|
16
|
Ghosh K, Ali SS, Sarkar AR, Samadder A, Khuda-Bukhsh AR, Petsalakis ID, Theodorakopoulos G. Pyridinium-based tripodal chemosensor in visual sensing of AMP in water by indicator displacement assay (IDA). Org Biomol Chem 2014; 11:5666-72. [PMID: 23880956 DOI: 10.1039/c3ob40833g] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Abstract
A simple pyridinium-based tripodal chemosensor, 1, effectively recognizes AMP over ATP and ADP through indicator displacement assay (IDA) technique in water at pH 6.4. The good recognition of 1 is due to the better accommodation of AMP at the core of 1 as well as functional interaction involving hydrogen bonding and charge-charge interaction. The sensor 1 also recognizes intracellular AMP.
Collapse
Affiliation(s)
- Kumaresh Ghosh
- Department of Chemistry, University of Kalyani, Kalyani-741235, India.
| | | | | | | | | | | | | |
Collapse
|
17
|
Ghosh K, Kar D, Joardar S, Samadder A, Khuda-Bukhsh AR. Azaindole-1,2,3-triazole conjugate in a tripod for selective sensing of Cl−, H2PO4− and ATP under different conditions. RSC Adv 2014. [DOI: 10.1039/c3ra45018j] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
|
18
|
Saeed MA, Pramanik A, Hossain MA. Phosphate binding with a thiophene-based azamacrocycle in water. INORG CHEM COMMUN 2013; 21:32-34. [PMID: 23874145 DOI: 10.1016/j.inoche.2012.04.003] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
Abstract
Structural characterization of the phosphate complex with a thiophene-based macrocycle suggests that two dihydrogen phosphates in a dimeric form are encapsulated in the cavity via several hydrogen bonds from NH···O and CH···O interactions. In the lattice framework, the two dimers are linearly hydrogen-bonded to form a tetramer. 1H NMR titrations suggest that the host forms a 1:1 complex with phosphate, showing an association constant of 120 M-1 in D2O at pH = 5.5. The host guest complexation was further confirmed by ESI-MS in a gas phase.
Collapse
Affiliation(s)
- Musabbir A Saeed
- Department of Chemistry and Biochemistry, Jackson State University, Jackson, MS 39217
| | | | | |
Collapse
|
19
|
Gogoi A, Das G. Electronic substitution effects on anion coordination of a tripodal thiourea receptor: evidences of deprotonation of oxy-anions in solid and solution. Supramol Chem 2013. [DOI: 10.1080/10610278.2013.808343] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Affiliation(s)
- Abhijit Gogoi
- Department of Chemistry, Indian Institute of Technology, GuwahatiAssam781039, India
| | - Gopal Das
- Department of Chemistry, Indian Institute of Technology, GuwahatiAssam781039, India
| |
Collapse
|
20
|
Pouessel J, Abada S, Le Bris N, Elhabiri M, Charbonnière LJ, Tripier R. A new bis-tetraamine ligand with a chromophoric 4-(9-anthracenyl)-2,6-dimethylpyridinyl linker for glyphosate and ATP sensing. Dalton Trans 2013; 42:4859-72. [PMID: 23370614 DOI: 10.1039/c3dt32325k] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The synthesis of a new linear bis-tetraamine ligand L1, based on two 1,4,8,11-tetraazaundecane units grafted at the 2 and 6 positions of a pyridinyl linker substituted by an anthracenyl fluorophore in the para position, is described and anion complexation studies of L1 with anionic substrates are reported. The protonation pattern and the study of the binding properties of L1 in an aqueous medium with two anionic substrates, the nucleotide adenosine triphosphate (ATP) and the herbicide glyphosate (N-(phosphonomethyl)glycine, PMG), were investigated by means of potentiometry, NMR spectroscopy and absorption and emission spectroscopic techniques. To decipher the impact of the chromophoric linker on the complexation process and to highlight its optical properties, a comparison is established with its previously reported analog L2 devoid of the anthracenyl group. The results unambiguously show that the protonation and complexation properties are preserved despite the presence of the bulky linker, allowing for the use of L1 as a fluorescent sensor for ATP and PMG.
Collapse
Affiliation(s)
- Jacky Pouessel
- Laboratoire de Chimie, Electrochimie Moléculaires et Chimie Analytique, UMR 6521 CNRS/Université de Bretagne Occidentale, 6 Avenue Victor Le Gorgeu, 29238 Brest Cedex 3, France
| | | | | | | | | | | |
Collapse
|
21
|
|
22
|
Bazzicalupi C, Bianchi A, Giorgi C, Clares MP, García-España E. Addressing selectivity criteria in binding equilibria. Coord Chem Rev 2012. [DOI: 10.1016/j.ccr.2011.05.013] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
|
23
|
Bhalla V, Tejpal R, Kumar M. New terphenyl based mercury ensemble for detection of acetate ions in a plasma like system. Dalton Trans 2012; 41:403-7. [DOI: 10.1039/c1dt11106j] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
|
24
|
Dey SK, Das G. Selective inclusion of PO43− within persistent dimeric capsules of a tris(thiourea) receptor and evidence of cation/solvent sealed unimolecular capsules. Dalton Trans 2012; 41:8960-72. [DOI: 10.1039/c2dt30687e] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
|
25
|
Hargrove AE, Nieto S, Zhang T, Sessler JL, Anslyn EV. Artificial receptors for the recognition of phosphorylated molecules. Chem Rev 2011; 111:6603-782. [PMID: 21910402 PMCID: PMC3212652 DOI: 10.1021/cr100242s] [Citation(s) in RCA: 491] [Impact Index Per Article: 37.8] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
|
26
|
Xu Z, Song NR, Moon JH, Lee JY, Yoon J. Bis- and tris-naphthoimidazolium derivatives for the fluorescent recognition of ATP and GTP in 100% aqueous solution. Org Biomol Chem 2011; 9:8340-5. [PMID: 22052071 DOI: 10.1039/c1ob06344h] [Citation(s) in RCA: 44] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
Naphthoimidazolium groups can form unique ionic hydrogen bonds with anions as imidazolium moieties, and in addition, they are fluorescent, so no further elaborative synthesis is needed to introduce a fluorescent group. In this paper, three naphthoimidazolium derivatives were synthesized and studied for the recognition of nucleotides. Compound 1 composed of a single naphthoimidazolium group and quaternary ammonium group did not show any significant fluorescent changes with various anions and nucleotides, such as ATP, GTP, CTP, TTP, UTP, ADP and AMP. A tripodal compound 3 bearing three naphthoimidazolium groups and three quaternary ammonium groups, respectively, showed large fluorescence enhancements with UTP, CTP and TTP and moderate fluorescence enhancements with ATP and pyrophosphate and a fluorescence quenching effect with GTP. On the other hand, compound 2 bearing two naphthoimidazolium groups and two quaternary ammonium groups displayed a selective fluorescence enhancement with ATP and a selective fluorescence quenching effect with GTP in 100% aqueous solution.
Collapse
Affiliation(s)
- Zhaochao Xu
- Department of Chemistry and Nano Science, Ewha Womans University, Seoul 120-750, Korea
| | | | | | | | | |
Collapse
|
27
|
Dalla Cort A, Forte G, Schiaffino L. Anion Recognition in Water with Use of a Neutral Uranyl-salophen Receptor. J Org Chem 2011; 76:7569-72. [DOI: 10.1021/jo201213e] [Citation(s) in RCA: 50] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Antonella Dalla Cort
- Department of Chemistry and IMC-CNR, Università La Sapienza, Piazzale Aldo Moro 5, 00185 Roma, Italy
| | - Gianpiero Forte
- Department of Chemistry and IMC-CNR, Università La Sapienza, Piazzale Aldo Moro 5, 00185 Roma, Italy
| | - Luca Schiaffino
- Department of Chemical Sciences and Technologies, Università degli Studi di Roma “Tor Vergata”, Via della Ricerca Scientifica, 00133 Roma, Italy
| |
Collapse
|
28
|
Bazzicalupi C, Bencini A, Giorgi C, Valtancoli B, Lippolis V, Perra A. Exploring the Binding Ability of Polyammonium Hosts for Anionic Substrates: Selective Size-Dependent Recognition of Different Phosphate Anions by Bis-macrocyclic Receptors. Inorg Chem 2011; 50:7202-16. [DOI: 10.1021/ic2007815] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
|
29
|
Sakai R, Sakai N, Satoh T, Li W, Zhang A, Kakuchi T. Strict Size Specificity in Colorimetric Anion Detection Based on Poly(phenylacetylene) Receptor Bearing Second Generation Lysine Dendrons. Macromolecules 2011. [DOI: 10.1021/ma200710r] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Affiliation(s)
- Ryosuke Sakai
- Division of Biotechnology and Macromolecular Chemistry, Graduate School of Engineering, Hokkaido University, Sapporo 060-8628, Japan
| | - Naoya Sakai
- Division of Biotechnology and Macromolecular Chemistry, Graduate School of Engineering, Hokkaido University, Sapporo 060-8628, Japan
| | - Toshifumi Satoh
- Division of Biotechnology and Macromolecular Chemistry, Graduate School of Engineering, Hokkaido University, Sapporo 060-8628, Japan
| | - Wen Li
- Department of Polymer Materials, Shanghai University, Shanghai 201800, China
| | - Afang Zhang
- Department of Polymer Materials, Shanghai University, Shanghai 201800, China
| | - Toyoji Kakuchi
- Division of Biotechnology and Macromolecular Chemistry, Graduate School of Engineering, Hokkaido University, Sapporo 060-8628, Japan
| |
Collapse
|
30
|
Pouessel J, Bazzicalupi C, Bencini A, Bernard H, Giorgi C, Handel H, Matera I, Le Bris N, Tripier R, Valtancoli B. Exploring new molecular architectures for anion recognition: synthesis and ATP binding properties of new cyclam-based ditopic polyammonium receptors. Chem Asian J 2011; 6:1582-94. [PMID: 21557488 DOI: 10.1002/asia.201100046] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2011] [Indexed: 11/06/2022]
Abstract
Synthesis and characterization of three new polyamine receptors, composed of a cyclam unit (cyclam=1,4,8,11-tetraazacyclotetradecane) linked by a 2,6-dimethylpyridinyl spacer to the linear polyamines 1,4,8,11-tetraazaundecane (L1py), 1,4,7-triazaheptane (L2py), and to a quaternary ammonium group (L3py(+)), are reported. All receptors form highly charged polyammonium cations at neutral pH, suitable for anion recognition studies. ATP recognition was analyzed by using potentiometric, calorimetric, (1)H and (31)P NMR measurements in aqueous solution. All receptors form 1:1 adducts with ATP in aqueous solution, stabilized by charge-charge and hydrogen-bonding interactions between their ammonium groups and the anionic triphosphate chain of ATP. The binding ability of the three receptors for ATP increases in the order of L3py(+)<L2py<L1py. These adducts are stabilized by largely favourable entropic contributions, probably due to the large desolvation of the host and guest species upon complexation. The sequence observed for the binding affinity is explained in terms of the different ability of the three receptors to wrap around the phosphate chain of ATP.
Collapse
Affiliation(s)
- Jacky Pouessel
- Laboratoire de Chimie, Electrochimie Moléculaires et Chimie Analytique, Université de Brest, UMR CNRS 6521, 6 Avenue Victor Le Gorgeu, 29200 Brest, France
| | | | | | | | | | | | | | | | | | | |
Collapse
|
31
|
Kim HN, Moon JH, Kim SK, Kwon JY, Jang YJ, Lee JY, Yoon J. Fluorescent sensing of triphosphate nucleotides via anthracene derivatives. J Org Chem 2011; 76:3805-11. [PMID: 21500816 DOI: 10.1021/jo2000836] [Citation(s) in RCA: 60] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Abstract
A nucleotide is composed of a nucleobase, a five-carbon sugar, and phosphate groups. Recognition of these three sites can provide useful information for the development of selective fluorescent receptors for a specific nucleotide. In this paper, anthracene derivatives with two imidazolium groups at the 1,8- and 9,10-positions, quaternary ammonium groups, or the boronic acid group were examined for the recognition of nucleotides, such as ATP, GTP, CTP, TTP, UTP, ADP, and AMP, via fluorescence changes. The anthracene group provides the interaction between the bases of the nucleotides. The imidazolium and quaternary ammonium groups induce hydrogen bonding interactions with the phosphate groups of the nucleotides. The boronic acid group can interact with the ribose of the nucleotides.
Collapse
Affiliation(s)
- Ha Na Kim
- Department of Chemistry and Nano Science, Ewha Womans University, Seoul 120-750, Korea
| | | | | | | | | | | | | |
Collapse
|
32
|
Xu Z, Spring DR, Yoon J. Fluorescent sensing and discrimination of ATP and ADP based on a unique sandwich assembly of pyrene-adenine-pyrene. Chem Asian J 2011; 6:2114-22. [PMID: 21506284 DOI: 10.1002/asia.201100120] [Citation(s) in RCA: 54] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2011] [Indexed: 11/07/2022]
Abstract
It is still a challenging task to discriminate adenosine-5'-triphosphate (ATP) from various nucleoside triphosphates, such as GTP, CTP, UTP, and TTP. The ability to distinguish ATP from adenosine diphosphate (ADP) by fluorescent signals is also urgently desired. Herein, we report two pyrene-based zinc complexes as nucleoside polyphosphate receptors with high selectivity for ATP and ADP based on fluorescence and NMR studies. A unique pyrene-adenine-pyrene sandwich assembly was observed in the case of compound 1 with ATP or ADP, resulting in the increase of monomer fluorescence intensity; whereas the other bases of nucleoside triphosphates, such as GTP, CTP, UTP, and TTP were not sandwiched, resulting in a switch in the monomer-excimer fluorescence of pyrene. The different binding patterns of various nucleobases with a pyrene-pyrene assembly make 1 a highly selective fluorescent sensor for ANP (N=di, tri). In the case of compound 2, the first 0.5 equivalents of ATP induced a strong excimer emission, whilst ADP induced a large enhancement in the monomeric fluorescent peak. This fluorescence change makes 2 an efficient sensor to discriminate ATP from ADP.
Collapse
Affiliation(s)
- Zhaochao Xu
- Department of Chemistry and Nano Science, Ewha Womans University, Seoul, 120-750, Korea
| | | | | |
Collapse
|
33
|
Kuchelmeister HY, Schmuck C. Nucleotide recognition in water by a guanidinium-based artificial tweezer receptor. Chemistry 2011; 17:5311-8. [PMID: 21462273 DOI: 10.1002/chem.201003393] [Citation(s) in RCA: 60] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2010] [Indexed: 11/06/2022]
Abstract
The water-soluble tweezer receptor 1 with two symmetric peptidic arms, which are connected by an aromatic scaffold and contain lysine, phenylalanine, and a guanidinium-based anion-binding site as headgroup, has been synthesized. UV/Vis-derived Job plots show that the receptor forms 1:1 complexes with nucleotides and phosphate in buffered water at neutral pH. Binding constants have been determined by fluorescence and UV/Vis spectroscopy. All nucleotides tested were bound very efficiently, even in pure water, with binding constants between 10(4) and 10(5) M(-1) . Interestingly, all mononucleotides were bound much stronger than phosphate by a factor of at least 5 to 10. Furthermore 1 favors the binding of adenosine monophosphate (AMP) over adenosine diphosphate (ADP) and adenosine triphosphate (ATP), which is unprecedented for artificial nucleotide receptors reported so far. According to NMR spectroscopy and molecular modeling studies, the efficient binding is a result of strong electrostatic contacts supported by π-π interactions with the nucleobase within the cavity-shaped receptor.
Collapse
Affiliation(s)
- Hannes Y Kuchelmeister
- Institute of Organic Chemistry, University of Duisburg-Essen, Universitätsstrasse 7, 45141 Essen, Germany
| | | |
Collapse
|
34
|
Abstract
Gaps in the central strand of oligonucleotide triplexes bind nucleoside phosphates tightly. Watson-Crick and Hoogsteen base pairing as design principle yield motifs with high affinity for nucleoside phosphates with A or G as nucleobase, including ATP. The second messenger 3',5'-cAMP is bound with nanomolar affinity. A designed DNA motif accommodates seven nucleotides at a time. The design was implemented for both DNA and RNA.
Collapse
Affiliation(s)
- Christoph Kröner
- Institute for Organic Chemistry, University of Stuttgart, 70569 Stuttgart, Germany
| | | | | |
Collapse
|
35
|
Zhou Y, Xu Z, Yoon J. Fluorescent and colorimetric chemosensors for detection of nucleotides, FAD and NADH: highlighted research during 2004-2010. Chem Soc Rev 2011; 40:2222-35. [PMID: 21336366 DOI: 10.1039/c0cs00169d] [Citation(s) in RCA: 286] [Impact Index Per Article: 22.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
Due to the biological importance of nucleotides and related species, such as XNP (where X = adenosine (A), uridine (U), cytidine (C), guanosine (G), and N = mono, di, tri), FAD and NADH, the development of optical probes for these molecules has recently been an active area of research. This tutorial review focuses on the contributions between 2004-2010 concerning the fluorescent or colorimetric sensors for these biomolecules, and is organized according to their target molecule's structural classification.
Collapse
Affiliation(s)
- Ying Zhou
- Department of Chemistry and Nano Science, Ewha Womans University, Seoul 120-750, Korea
| | | | | |
Collapse
|
36
|
Moragues ME, Martínez-Máñez R, Sancenón F. Chromogenic and fluorogenic chemosensors and reagents for anions. A comprehensive review of the year 2009. Chem Soc Rev 2011; 40:2593-643. [PMID: 21279197 DOI: 10.1039/c0cs00015a] [Citation(s) in RCA: 348] [Impact Index Per Article: 26.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Abstract
This critical review is focused on examples reported in the year 2009 dealing with the design of chromogenic and fluorogenic chemosensors or reagents for anions (264 references).
Collapse
Affiliation(s)
- María E Moragues
- Centro Interuniversitario de Reconocimiento Molecular y Desarrollo Tecnológico, (IDM), Unidad Mixta Universidad Politécnica de Valencia-Universitat de València, Spain
| | | | | |
Collapse
|
37
|
Wen J, Geng Z, Yin Y, Zhang Z, Wang Z. A Zn2+-specific turn-on fluorescent probe for ratiometric sensing of pyrophosphate in both water and blood serum. Dalton Trans 2011; 40:1984-9. [DOI: 10.1039/c0dt01262a] [Citation(s) in RCA: 49] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
|
38
|
Goswami S, Das NK, Sen D, Hazra G, Goh JH, Sing YC, Fun HK. Recognition of acids involved in Krebs cycle by 9-anthrylmethyl-di(6-acetylamino-2-picolyl)amine: a case of selective fluorescence enhancement for maleic acid. NEW J CHEM 2011. [DOI: 10.1039/c1nj20339h] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
|
39
|
Arranz-Mascarós P, Bazzicalupi C, Bianchi A, Giorgi C, Godino-Salido ML, Gutiérrez-Valero MD, Lopez-Garzón R, Valtancoli B. Binding and recognition of AMP, ADP, ATP and related inorganic phosphate anions by a tren-based ligand containing a pyrimidine functionality. NEW J CHEM 2011. [DOI: 10.1039/c1nj20393b] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
|
40
|
Bazzicalupi C, Chioccioli M, Sissi C, Porcù E, Bonaccini C, Pivetta C, Bencini A, Giorgi C, Valtancoli B, Melani F, Gratteri P. Modeling and Biological Investigations of an Unusual Behavior of Novel Synthesized Acridine-Based Polyamine Ligands in the Binding of Double Helix and G-Quadruplex DNA. ChemMedChem 2010; 5:1995-2005. [DOI: 10.1002/cmdc.201000332] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
|
41
|
Bencini A, Lippolis V. 1,10-Phenanthroline: A versatile building block for the construction of ligands for various purposes. Coord Chem Rev 2010. [DOI: 10.1016/j.ccr.2010.04.008] [Citation(s) in RCA: 288] [Impact Index Per Article: 20.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
|
42
|
Kitamura M, Nishimoto H, Aoki K, Tsukamoto M, Aoki S. Molecular recognition of inositol 1,4,5-trisphosphate and model compounds in aqueous solution by ditopic Zn(2+) complexes containing chiral linkers. Inorg Chem 2010; 49:5316-27. [PMID: 20420391 DOI: 10.1021/ic1004038] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
We report on molecular recognition of inositol 1,4,5-trisphosphate (Ins(1,4,5)P(3)), an important intracellular second messenger, and some related model compounds, cyclohexanediol bisphosphate derivatives (CDP(2)), by ditopic Zn(2+) complexes containing chiral linkers ((S,S)- and (R,R)-11) in aqueous solution at physiological pH. A crystal structure analysis of (S,S)-11 indicated that the distance between two Zn(2+) ions (6.8 A) is suitable for accommodating two phosphate groups at the 4- and 5-positions of Ins(1,4,5)P(3) and two phosphate groups of trans-1,2-CDP(2). (1)H NMR, (31)P NMR, potentiometric pH, and isothermal calorimetric titration data indicate that (S,S)-11 forms 1:1 complexes with (S,S)- and (R,R)-1,2-CDP(2) at pH 7.4 and 25 degrees C. The apparent 1:1 complexation constants (log K(app)) for (S,S)-11-(S,S)-1,2-CDP(2) and (S,S)-11-(R,R)-1,2-CDP(2) (K(app) = [(S,S)-11-1,2-CDP(2) complex]/[(S,S)-11][1,2-CDP(2)] (M(-1))) were determined to be 7.6 +/- 0.1 and 7.3 +/- 0.1, respectively, demonstrating that both enantiomers of 11 bind to chiral trans-1,2-CDP(2) to almost the same extent. The log K(app) value of 6.3 was obtained for a 1:1 complex of (S,S)-11 with cis-1,3-CDP(2), while a small amount of 2:1 (S,S)-11-cis-1,3-CDP(2) was detected, as evidenced by electrospray ionization mass spectrometry (ESI-MS). In contrast, 11 formed several complexes with trans-1,4-CDP(2). On the basis of isothermal titration calorimetry data for (S,S)- and (R,R)-11 with Ins(1,4,5)P(3), it was concluded that 11 forms a 2:1 complex with Ins(1,4,5)P(3), in which the first molecule of 11 binds to the 4- and 5-phosphates of Ins(1,4,5)P(3) and the second molecule of 11 binds to the 1- and 5-phosphates.
Collapse
Affiliation(s)
- Masanori Kitamura
- Faculty of Pharmaceutical Sciences, Tokyo University of Science,2641 Yamazaki, Noda 278-8510, Japan
| | | | | | | | | |
Collapse
|
43
|
Lohani CR, Kim JM, Chung SY, Yoon J, Lee KH. Colorimetric and fluorescent sensing of pyrophosphate in 100% aqueous solution by a system comprised of rhodamine B compound and Al3+ complex. Analyst 2010; 135:2079-84. [DOI: 10.1039/c0an00059k] [Citation(s) in RCA: 220] [Impact Index Per Article: 15.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
|
44
|
Bazzicalupi C, Bencini A, Lippolis V. Tailoring cyclic polyamines for inorganic/organic phosphate binding. Chem Soc Rev 2010; 39:3709-28. [DOI: 10.1039/b926161n] [Citation(s) in RCA: 83] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
|