1
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Vibrational dynamics of the OD stretch in an atomistic simulation of HDO in H2O. J Mol Liq 2022. [DOI: 10.1016/j.molliq.2022.120430] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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2
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Ishiyama T. Ab initio molecular dynamics study on energy relaxation path of hydrogen-bonded OH vibration in bulk water. J Chem Phys 2021; 154:204502. [PMID: 34241149 DOI: 10.1063/5.0050078] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The vibrational energy relaxation paths of hydrogen-bonded (H-bonded) OH excited in pure water and in isotopically diluted (deuterated) water are elucidated via non-equilibrium ab initio molecular dynamics (NE-AIMD) simulations. The present study extends the previous NE-AIMD simulation for the energy relaxation of an excited free OH vibration at an air/water interface [T. Ishiyama, J. Chem. Phys. 154, 104708 (2021)] to the energy relaxation of an excited H-bonded OH vibration in bulk water. The present simulation shows that the excited OH vibration in pure water dissipates its energy on a timescale of 0.1 ps, whereas that in deuterated water relaxes on a timescale of 0.7 ps, consistent with the experimental observations. To decompose these relaxation energies into the components due to intramolecular and intermolecular couplings, constraints are introduced on the vibrational modes except for the target path in the NE-AIMD simulation. In the case of pure water, 80% of the total relaxation is attributed to the pathway due to the resonant intermolecular OH⋯OH stretch coupling, and the remaining 17% and 3% are attributed to intramolecular couplings with the bend overtone and with the conjugate OH stretch, respectively. This result strongly supports a significant role for the Förster transfer mechanism of pure water due to the intermolecular dipole-dipole interactions. In the case of deuterated water, on the other hand, 36% of the total relaxation is due to the intermolecular stretch coupling, and all the remaining 64% arises from coupling with the intramolecular bend overtone.
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Affiliation(s)
- Tatsuya Ishiyama
- Department of Applied Chemistry, Graduate School of Science and Engineering, University of Toyama, Toyama 930-8555, Japan
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3
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Piskulich ZA, Laage D, Thompson WH. On the role of hydrogen-bond exchanges in the spectral diffusion of water. J Chem Phys 2021; 154:064501. [PMID: 33588543 DOI: 10.1063/5.0041270] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The dynamics of a vibrational frequency in a condensed phase environment, i.e., the spectral diffusion, has attracted considerable interest over the last two decades. A significant impetus has been the development of two-dimensional infrared (2D-IR) photon-echo spectroscopy that represents a direct experimental probe of spectral diffusion, as measured by the frequency-frequency time correlation function (FFCF). In isotopically dilute water, which is perhaps the most thoroughly studied system, the standard interpretation of the longest timescale observed in the FFCF is that it is associated with hydrogen-bond exchange dynamics. Here, we investigate this connection by detailed analysis of both the spectral diffusion timescales and their associated activation energies. The latter are obtained from the recently developed fluctuation theory for the dynamics approach. The results show that the longest timescale of spectral diffusion obtained by the typical analysis used cannot be directly associated with hydrogen-bond exchanges. The hydrogen-bond exchange time does appear in the decay of the water FFCF, but only as an additional, small-amplitude (<3%) timescale. The dominant contribution to the long-time spectral diffusion dynamics is considerably shorter than the hydrogen-bond exchange time and exhibits a significantly smaller activation energy. It thus arises from hydrogen-bond rearrangements, which occur in between successful hydrogen-bond partner exchanges, and particularly from hydrogen bonds that transiently break before returning to the same acceptor.
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Affiliation(s)
- Zeke A Piskulich
- Department of Chemistry, University of Kansas, Lawrence, Kansas 66045, USA
| | - Damien Laage
- PASTEUR, Department of Chemistry, École Normale Supérieure, PSL University, Sorbonne Université, CNRS, 75005 Paris, France
| | - Ward H Thompson
- Department of Chemistry, University of Kansas, Lawrence, Kansas 66045, USA
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4
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Biswas S, Mallik BS. Vibration Spectral Dynamics of Weakly Coordinating Water Molecules near an Anion: FPMD Simulations of an Aqueous Solution of Tetrafluoroborate. J Phys Chem B 2019; 123:2135-2146. [PMID: 30759344 DOI: 10.1021/acs.jpcb.9b00069] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The extent to which the ions affect the nearby water molecules will decide the structure-making or breaking nature of those ions in aqueous solutions. The effects of a weakly coordinating anion on the structure, dynamics, and vibrational properties of water molecules are not so significant as compared to an anion capable of making strong ion-water hydrogen bonds. The present work deals with the first-principles molecular dynamics study of an aqueous solution of such a weakly coordinating anion, tetrafluoroborate (BF4-), using dispersion-corrected DFT-based first-principles molecular dynamics (FPMD) simulations. Various structural, dynamical, and spectral properties, such as radial distribution functions (RDFs), rotational dynamics, vibrational density of states (VDOS), hydrogen bond as well as dangling OH autocorrelation functions, and residence dynamics, were calculated to investigate the effects of the anion on nearby water molecules. The process of spectral diffusion was assessed through a time series wavelet transformation of trajectories obtained from FPMD simulations. The first ion-water solvation shell extends up to 5.5 Å, containing around 20 water molecules. The lifetime of the ion-water hydrogen bond is found to be 1.19 ps, whereas the water-water hydrogen bond lifetime is found to be 1.13 ps. Inside the solvation shell, the persistence time of dangling OH chromophores and the average frequency of OH modes inside the solvation shell are found to be more compared to bulk. Three time scales are found for solvation shell OH modes from the frequency-frequency correlation function. A very short time scale is found for the intact ion-water interaction; the short time scale is for the ion-water hydrogen bond, and the long time scale is for escape dynamics of water molecules from the ion solvation shell. From the mean squared displacement, it is found that solvation water molecules diffuse slower than the bulk. However, solvation shell water molecules show faster relaxation from the analysis of rotational anisotropy. Within the longer time scale of spectral diffusion, this process (which is related to various dynamics of the molecules) is not yet complete, as compared to fast anisotropic decay. This fact is similar to the experimental finding of spectral diffusion and anisotropy time scales in the aqueous solution of borohydride anion. The calculated results are also compared with available experimental data wherever possible.
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Affiliation(s)
- Sohag Biswas
- Department of Chemistry , Indian Institute of Technology Hyderabad , Kandi, Sangareddy , 502 285 Telangana , India
| | - Bhabani S Mallik
- Department of Chemistry , Indian Institute of Technology Hyderabad , Kandi, Sangareddy , 502 285 Telangana , India
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5
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Yang N, Duong CH, Kelleher PJ, Johnson MA. Unmasking Rare, Large-Amplitude Motions in D 2-Tagged I -·(H 2O) 2 Isotopomers with Two-Color, Infrared-Infrared Vibrational Predissociation Spectroscopy. J Phys Chem Lett 2018; 9:3744-3750. [PMID: 29924622 DOI: 10.1021/acs.jpclett.8b01485] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
We describe a two-color, isotopomer-selective infrared-infrared population-labeling method that can monitor very slow spectral diffusion of OH oscillators in H-bonded networks and apply it to the I-·(HDO)·(D2O) and I-·(H2O)·(D2O) systems, which are cryogenically cooled and D2-tagged at an ion trap temperature of 15 K. These measurements reveal very large (>400 cm-1), spontaneous spectral shifts despite the fact that the predissociation spectra in the OH stretching region of both isotopologues are sharp and readily assigned to four fundamentals of largely decoupled OH oscillators held in a cyclic H-bonded network. This spectral diffusion is not observed in the untagged isotopologues of the dihydrate clusters that are generated under the same source conditions but does become apparent at about 75 K. These results are discussed in the context of the large-amplitude "jump" mechanism for H-bond relaxation dynamics advanced by Laage and Hynes in an experimental scenario where rare events can be captured by following the migration of OH groups among the four available positions in the quasi-rigid equilibrium structure.
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Affiliation(s)
- Nan Yang
- Sterling Chemistry Laboratory , Yale University , New Haven , Connecticut 06520 , United States
| | - Chinh H Duong
- Sterling Chemistry Laboratory , Yale University , New Haven , Connecticut 06520 , United States
| | - Patrick J Kelleher
- Sterling Chemistry Laboratory , Yale University , New Haven , Connecticut 06520 , United States
| | - Mark A Johnson
- Sterling Chemistry Laboratory , Yale University , New Haven , Connecticut 06520 , United States
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6
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Kananenka AA, Skinner JL. Fermi resonance in OH-stretch vibrational spectroscopy of liquid water and the water hexamer. J Chem Phys 2018; 148:244107. [DOI: 10.1063/1.5037113] [Citation(s) in RCA: 40] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Affiliation(s)
- Alexei A. Kananenka
- Institute for Molecular Engineering, The University of Chicago, Chicago, Illinois 60637, USA
| | - J. L. Skinner
- Institute for Molecular Engineering, The University of Chicago, Chicago, Illinois 60637, USA
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7
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Karmakar A, Chandra A. Dynamics of vibrational spectral diffusion in water: Effects of dispersion interactions, temperature, density, system size and fictitious orbital mass. J Mol Liq 2018. [DOI: 10.1016/j.molliq.2017.11.027] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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8
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Biswas S, Mallik BS. Ultrafast Vibrational Spectroscopy of Aqueous Solution of Methylamine from First Principles MD Simulations. ChemistrySelect 2017. [DOI: 10.1002/slct.201601391] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Sohag Biswas
- Department of Chemistry; Indian Institute of Technology Hyderabad, Kandi, Sangareddy -; 502285 Telangana India
| | - Bhabani S. Mallik
- Department of Chemistry; Indian Institute of Technology Hyderabad, Kandi, Sangareddy -; 502285 Telangana India
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9
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Miguel B, Zúñiga J, Requena A, Bastida A. Relaxation pathways of the OD stretch fundamental of HOD in liquid H2O. J Chem Phys 2016; 145:244502. [DOI: 10.1063/1.4972128] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Beatriz Miguel
- Departamento de Ingeniería Química y Ambiental, Universidad Politécnica de Cartagena, 30203 Cartagena, Spain
| | - José Zúñiga
- Departamento de Química Física, Universidad de Murcia, 30100 Murcia, Spain
| | - Alberto Requena
- Departamento de Química Física, Universidad de Murcia, 30100 Murcia, Spain
| | - Adolfo Bastida
- Departamento de Química Física, Universidad de Murcia, 30100 Murcia, Spain
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10
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Chen X, Choing SN, Aschaffenburg DJ, Pemmaraju CD, Prendergast D, Cuk T. The Formation Time of Ti–O• and Ti–O•–Ti Radicals at the n-SrTiO3/Aqueous Interface during Photocatalytic Water Oxidation. J Am Chem Soc 2016; 139:1830-1841. [DOI: 10.1021/jacs.6b09550] [Citation(s) in RCA: 58] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Xihan Chen
- Department
of Chemistry, University of California, Berkeley, Berkeley, California 94720, United States
| | - Stephanie N. Choing
- Department
of Chemistry, University of California, Berkeley, Berkeley, California 94720, United States
| | - Daniel J. Aschaffenburg
- Department
of Chemistry, University of California, Berkeley, Berkeley, California 94720, United States
| | | | | | - Tanja Cuk
- Department
of Chemistry, University of California, Berkeley, Berkeley, California 94720, United States
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11
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Vaissier V, Sakai VG, Li X, Cabral JT, Nelson J, Barnes PRF. How mobile are dye adsorbates and acetonitrile molecules on the surface of TiO 2 nanoparticles? A quasi-elastic neutron scattering study. Sci Rep 2016; 6:39253. [PMID: 27991538 PMCID: PMC5171786 DOI: 10.1038/srep39253] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2016] [Accepted: 11/22/2016] [Indexed: 01/01/2023] Open
Abstract
Motions of molecules adsorbed to surfaces may control the rate of charge transport within monolayers in systems such as dye sensitized solar cells. We used quasi-elastic neutron scattering (QENS) to evaluate the possible dynamics of two small dye moieties, isonicotinic acid (INA) and bis-isonicotinic acid (BINA), attached to TiO2 nanoparticles via carboxylate groups. The scattering data indicate that moieties are immobile and do not rotate around the anchoring groups on timescales between around 10 ps and a few ns (corresponding to the instrumental range). This gives an upper limit for the rate at which conformational fluctuations can assist charge transport between anchored molecules. Our observations suggest that if the conformation of larger dye molecules varies with time, it does so on longer timescales and/or in parts of the molecule which are not directly connected to the anchoring group. The QENS measurements also indicate that several layers of acetonitrile solvent molecules are immobilized at the interface with the TiO2 on the measurement time scale, in reasonable agreement with recent classical molecular dynamics results.
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Affiliation(s)
- Valerie Vaissier
- Department of Physcis, Imperial College London, London, SW72AZ, United Kingdom
- Centre for Plastics Electronics, Imperial College London, SW72AZ, United Kingdom
| | - Victoria Garcia Sakai
- ISIS Pulsed neutron and Muon Source, Rutherford Appleton Laboratory, Didcot, OX11 0QX, United Kingdom
| | - Xiaoe Li
- Department of Chemistry, Imperial College London, London, SW72AZ, United Kingdom
| | - João T. Cabral
- Centre for Plastics Electronics, Imperial College London, SW72AZ, United Kingdom
- Department of Chemical Engineering, Imperial College London, London, SW72AZ, United Kingdom
| | - Jenny Nelson
- Department of Physcis, Imperial College London, London, SW72AZ, United Kingdom
- Centre for Plastics Electronics, Imperial College London, SW72AZ, United Kingdom
| | - Piers R. F. Barnes
- Department of Physcis, Imperial College London, London, SW72AZ, United Kingdom
- Centre for Plastics Electronics, Imperial College London, SW72AZ, United Kingdom
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12
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Rodgers JM, Zhang W, Bazewicz CG, Chen J, Brewer SH, Gai F. Kinetic Isotope Effect Provides Insight into the Vibrational Relaxation Mechanism of Aromatic Molecules: Application to Cyano-phenylalanine. J Phys Chem Lett 2016; 7:1281-1287. [PMID: 26990401 PMCID: PMC4824650 DOI: 10.1021/acs.jpclett.6b00325] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/29/2023]
Abstract
Varying the reduced mass of an oscillator via isotopic substitution provides a convenient means to alter its vibrational frequency and hence has found wide applications. Herein, we show that this method can also help delineate the vibrational relaxation mechanism, using four isotopomers of the unnatural amino acid p-cyano-phenylalanine (Phe-CN) as models. In water, the nitrile stretching frequencies of these isotopomers, Phe-(12)C(14)N (1), Phe-(12)C(15)N (2), Phe-(13)C(14)N (3), and Phe-(13)C(15)N (4), are found to be equally separated by ∼27 cm(-1), whereas their vibrational lifetimes are determined to be 4.0 ± 0.2 (1), 2.2 ± 0.1 (2), 3.4 ± 0.2 (3), and 7.9 ± 0.5 ps (4), respectively. We find that an empirical relationship that considers the effective reduced mass of CN can accurately account for the observed frequency gaps, while the vibrational lifetime distribution, which suggests an intramolecular relaxation mechanism, can be rationalized by the order-specific density of states near the CN stretching frequency.
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Affiliation(s)
- Jeffrey M. Rodgers
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104-6323
| | - Wenkai Zhang
- The Ultrafast Optical Processes Laboratory, University of Pennsylvania, Philadelphia, Pennsylvania 19104-6323
| | | | - Jianxin Chen
- The Ultrafast Optical Processes Laboratory, University of Pennsylvania, Philadelphia, Pennsylvania 19104-6323
| | - Scott H. Brewer
- Department of Chemistry, Franklin & Marshall College, Lancaster, Pennsylvania 17604-3003
| | - Feng Gai
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104-6323
- The Ultrafast Optical Processes Laboratory, University of Pennsylvania, Philadelphia, Pennsylvania 19104-6323
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13
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Karmakar A, Chandra A. Water in Hydration Shell of an Iodide Ion: Structure and Dynamics of Solute-Water Hydrogen Bonds and Vibrational Spectral Diffusion from First-Principles Simulations. J Phys Chem B 2015; 119:8561-72. [DOI: 10.1021/jp510714e] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Affiliation(s)
- Anwesa Karmakar
- Department of Chemistry, Indian Institute of Technology Kanpur, Kanpur, India 208016
| | - Amalendu Chandra
- Department of Chemistry, Indian Institute of Technology Kanpur, Kanpur, India 208016
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14
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Karmakar A, Chandra A. Ab initio molecular dynamics studies of hydrogen bonded structure, molecular motion, and frequency fluctuations of water in the vicinity of azide ions. J Chem Phys 2015; 142:164505. [DOI: 10.1063/1.4918579] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Affiliation(s)
- Anwesa Karmakar
- Department of Chemistry, Indian Institute of Technology Kanpur, Kanpur 208016, India
| | - Amalendu Chandra
- Department of Chemistry, Indian Institute of Technology Kanpur, Kanpur 208016, India
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15
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Karmakar A, Chandra A. Effects of dispersion interaction on vibrational spectral diffusion in aqueous NaBr solutions: An ab initio molecular dynamics study. Chem Phys 2015. [DOI: 10.1016/j.chemphys.2014.11.021] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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16
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Ni Y, Skinner JL. Ultrafast pump-probe and 2DIR anisotropy and temperature-dependent dynamics of liquid water within the E3B model. J Chem Phys 2014; 141:024509. [DOI: 10.1063/1.4886427] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022] Open
Affiliation(s)
- Yicun Ni
- Theoretical Chemistry Institute and Department of Chemistry, University of Wisconsin, Madison, Wisconsin 53706, USA
| | - J. L. Skinner
- Theoretical Chemistry Institute and Department of Chemistry, University of Wisconsin, Madison, Wisconsin 53706, USA
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17
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Shalit A, Perakis F, Hamm P. Communication: Disorder-suppressed vibrational relaxation in vapor-deposited high-density amorphous ice. J Chem Phys 2014. [DOI: 10.1063/1.4871476] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022] Open
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18
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Yagasaki T, Saito S. Fluctuations and Relaxation Dynamics of Liquid Water Revealed by Linear and Nonlinear Spectroscopy. Annu Rev Phys Chem 2013; 64:55-75. [DOI: 10.1146/annurev-physchem-040412-110150] [Citation(s) in RCA: 36] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
Many efforts have been devoted to elucidating the intra- and intermolecular dynamics of liquid water because of their important roles in many fields of science and engineering. Nonlinear spectroscopy is a powerful tool to investigate the dynamics. Because nonlinear response functions are described by more than one time variable, it is possible to analyze static and dynamic mode couplings. Here we review the intra- and intermolecular dynamics of liquid water revealed by recent linear and nonlinear spectroscopic experiments and computer simulations. In particular, we discuss the population relaxation, anisotropy decay, and spectral diffusion of the intra- and intermolecular motions of water and their temperature dependence, which play important roles in ultrafast dynamics and relaxations in water.
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Affiliation(s)
- Takuma Yagasaki
- Department of Theoretical and Computational Molecular Science, Institute for Molecular Science, and
| | - Shinji Saito
- Department of Theoretical and Computational Molecular Science, Institute for Molecular Science, and
- The Graduate University for Advanced Studies, Myodaiji, Okazaki, Aichi 444-8585, Japan
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19
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A first principles simulation study of vibrational spectral diffusion in aqueous NaBr solutions: Dynamics of water in ion hydration shells. Chem Phys 2013. [DOI: 10.1016/j.chemphys.2012.11.007] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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20
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Bastida A, Zúñiga J, Requena A, Miguel B. Molecular dynamics with quantum transitions study of the vibrational relaxation of the HOD bend fundamental in liquid D2O. J Chem Phys 2012; 136:234507. [DOI: 10.1063/1.4729251] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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21
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Yagasaki T, Saito S. A novel method for analyzing energy relaxation in condensed phases using nonequilibrium molecular dynamics simulations: Application to the energy relaxation of intermolecular motions in liquid water. J Chem Phys 2011; 134:184503. [DOI: 10.1063/1.3587105] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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22
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Bonn M, Bakker HJ, Ghosh A, Yamamoto S, Sovago M, Campen RK. Structural inhomogeneity of interfacial water at lipid monolayers revealed by surface-specific vibrational pump-probe spectroscopy. J Am Chem Soc 2011; 132:14971-8. [PMID: 20882964 DOI: 10.1021/ja106194u] [Citation(s) in RCA: 64] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Abstract
We report vibrational lifetime measurements of the OH stretch vibration of interfacial water in contact with lipid monolayers, using time-resolved vibrational sum frequency (VSF) spectroscopy. The dynamics of water in contact with four different lipids are reported and are characterized by vibrational relaxation rates measured at 3200, 3300, 3400, and 3500 cm(-1). We observe that the water molecules with an OH frequency ranging from 3300 to 3500 cm(-1) all show vibrational relaxation with a time constant of T(1) = 180 ± 35 fs, similar to what is found for bulk water. Water molecules with OH groups near 3200 cm(-1) show distinctly faster relaxation dynamics, with T(1) < 80 fs. We successfully model the data by describing the interfacial water containing two distinct subensembles in which spectral diffusion is, respectively, rapid (3300-3500 cm(-1)) and absent (3200 cm(-1)). We discuss the potential biological implications of the presence of the strongly hydrogen-bonded, rapidly relaxing water molecules at 3200 cm(-1) that are decoupled from the bulk water system.
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Affiliation(s)
- Mischa Bonn
- FOM Institute AMOLF, Science Park 104, 1098 XG, Amsterdam, The Netherlands
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23
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Li F, Skinner JL. Infrared and Raman line shapes for ice Ih. I. Dilute HOD in H(2)O and D(2)O. J Chem Phys 2010; 132:204505. [PMID: 20515098 DOI: 10.1063/1.3430518] [Citation(s) in RCA: 76] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023] Open
Abstract
Vibrational spectroscopy of ice Ih provides information about structure, dynamics, and vibrational coupling in this important substance. Vibrational spectra are simplified for HOD in either H(2)O or D(2)O, as in these instances the OD or OH stretch, respectively, functions as a local chromophore. As a first step in providing a theoretical treatment of the vibrational spectroscopy for the fully coupled system (H(2)O or D(2)O), herein we calculate the infrared and Raman spectra for the isotopically substituted systems. The calculation involves a classical molecular dynamics simulation using a new water model, an initial proton-disordered ice configuration, and ab initio based transition frequency, dipole, and polarizability maps. Our theoretical results are in reasonable agreement with experiment, and from our results we provide molecular and physical interpretations for the spectral features.
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Affiliation(s)
- F Li
- Department of Chemistry and Theoretical Chemistry Institute, University of Wisconsin, Madison, Wisconsin 53706, USA
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24
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Bastida A, Zúñiga J, Requena A, Miguel B. Hybrid quantum/classical simulation of the vibrational relaxation of the bend fundamental in liquid water. J Chem Phys 2009; 131:204505. [DOI: 10.1063/1.3266834] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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25
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Bakker HJ, Skinner JL. Vibrational Spectroscopy as a Probe of Structure and Dynamics in Liquid Water. Chem Rev 2009; 110:1498-517. [DOI: 10.1021/cr9001879] [Citation(s) in RCA: 586] [Impact Index Per Article: 39.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Affiliation(s)
- H. J. Bakker
- FOM Institute for Atomic and Molecular Physics, Kruislaan 407, 1098 SJ Amsterdam, The Netherlands, and Theoretical Chemistry Institute and Department of Chemistry, University of Wisconsin, Madison, Wisconsin 53706
| | - J. L. Skinner
- FOM Institute for Atomic and Molecular Physics, Kruislaan 407, 1098 SJ Amsterdam, The Netherlands, and Theoretical Chemistry Institute and Department of Chemistry, University of Wisconsin, Madison, Wisconsin 53706
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26
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Zhao W, Leroy F, Heggen B, Zahn S, Kirchner B, Balasubramanian S, Müller-Plathe F. Are There Stable Ion-Pairs in Room-Temperature Ionic Liquids? Molecular Dynamics Simulations of 1-n-Butyl-3-methylimidazolium Hexafluorophosphate. J Am Chem Soc 2009; 131:15825-33. [DOI: 10.1021/ja906337p] [Citation(s) in RCA: 249] [Impact Index Per Article: 16.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Wei Zhao
- Eduard-Zintl-Institut für Anorganische und Physikalische Chemie, Technische Universität Darmstadt, Petersenstrasse 20, D-64287 Darmstadt, Germany, Wilhelm-Ostwald Institute of Physical and Theoretical Chemistry, University of Leipzig, Linnéstrasse 2, D-04103 Leipzig, Germany, and Chemistry and Physics of Materials Unit, Jawaharlal Nehru Centre for Advanced Scientific Research, Jakkur, Bangalore 560 064, India
| | - Frédéric Leroy
- Eduard-Zintl-Institut für Anorganische und Physikalische Chemie, Technische Universität Darmstadt, Petersenstrasse 20, D-64287 Darmstadt, Germany, Wilhelm-Ostwald Institute of Physical and Theoretical Chemistry, University of Leipzig, Linnéstrasse 2, D-04103 Leipzig, Germany, and Chemistry and Physics of Materials Unit, Jawaharlal Nehru Centre for Advanced Scientific Research, Jakkur, Bangalore 560 064, India
| | - Berit Heggen
- Eduard-Zintl-Institut für Anorganische und Physikalische Chemie, Technische Universität Darmstadt, Petersenstrasse 20, D-64287 Darmstadt, Germany, Wilhelm-Ostwald Institute of Physical and Theoretical Chemistry, University of Leipzig, Linnéstrasse 2, D-04103 Leipzig, Germany, and Chemistry and Physics of Materials Unit, Jawaharlal Nehru Centre for Advanced Scientific Research, Jakkur, Bangalore 560 064, India
| | - Stefan Zahn
- Eduard-Zintl-Institut für Anorganische und Physikalische Chemie, Technische Universität Darmstadt, Petersenstrasse 20, D-64287 Darmstadt, Germany, Wilhelm-Ostwald Institute of Physical and Theoretical Chemistry, University of Leipzig, Linnéstrasse 2, D-04103 Leipzig, Germany, and Chemistry and Physics of Materials Unit, Jawaharlal Nehru Centre for Advanced Scientific Research, Jakkur, Bangalore 560 064, India
| | - Barbara Kirchner
- Eduard-Zintl-Institut für Anorganische und Physikalische Chemie, Technische Universität Darmstadt, Petersenstrasse 20, D-64287 Darmstadt, Germany, Wilhelm-Ostwald Institute of Physical and Theoretical Chemistry, University of Leipzig, Linnéstrasse 2, D-04103 Leipzig, Germany, and Chemistry and Physics of Materials Unit, Jawaharlal Nehru Centre for Advanced Scientific Research, Jakkur, Bangalore 560 064, India
| | - Sundaram Balasubramanian
- Eduard-Zintl-Institut für Anorganische und Physikalische Chemie, Technische Universität Darmstadt, Petersenstrasse 20, D-64287 Darmstadt, Germany, Wilhelm-Ostwald Institute of Physical and Theoretical Chemistry, University of Leipzig, Linnéstrasse 2, D-04103 Leipzig, Germany, and Chemistry and Physics of Materials Unit, Jawaharlal Nehru Centre for Advanced Scientific Research, Jakkur, Bangalore 560 064, India
| | - Florian Müller-Plathe
- Eduard-Zintl-Institut für Anorganische und Physikalische Chemie, Technische Universität Darmstadt, Petersenstrasse 20, D-64287 Darmstadt, Germany, Wilhelm-Ostwald Institute of Physical and Theoretical Chemistry, University of Leipzig, Linnéstrasse 2, D-04103 Leipzig, Germany, and Chemistry and Physics of Materials Unit, Jawaharlal Nehru Centre for Advanced Scientific Research, Jakkur, Bangalore 560 064, India
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27
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Falvo C, Palmieri B, Mukamel S. Coherent infrared multidimensional spectra of the OH stretching band in liquid water simulated by direct nonlinear exciton propagation. J Chem Phys 2009; 130:184501. [PMID: 19449930 PMCID: PMC2719952 DOI: 10.1063/1.3120771] [Citation(s) in RCA: 44] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2009] [Accepted: 03/28/2009] [Indexed: 01/11/2023] Open
Abstract
The two-dimensional vibrational response of the disordered strongly fluctuating OH exciton band in liquid water is investigated using a new simulation protocol. The direct nonlinear exciton propagation generalizes the nonlinear exciton equations to include nonadiabatic time dependent Hamiltonian and transition dipole fluctuations. The excitonic picture is retained and the large cancellation between Liouville pathways is built-in from the outset. The sensitivity of the photon echo and double-quantum-coherence techniques to frequency fluctuations, molecular reorientation, intermolecular coupling, and the two-exciton coherence is investigated. The photon echo is particularly sensitive to the frequency fluctuations and molecular reorientation, whereas the double-quantum coherence provides a unique probe for intermolecular couplings and two-exciton coherence.
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Affiliation(s)
- Cyril Falvo
- Department of Chemistry, University of California, Irvine, California 92697, USA
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28
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Zhuang W, Hayashi T, Mukamel S. Kohärente mehrdimensionale Schwingungsspektroskopie von Biomolekülen: Konzepte, Simulationen und Herausforderungen. Angew Chem Int Ed Engl 2009. [DOI: 10.1002/ange.200802644] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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29
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Mallik BS, Semparithi A, Chandra A. A first principles theoretical study of vibrational spectral diffusion and hydrogen bond dynamics in aqueous ionic solutions: D2O in hydration shells of Cl(-) ions. J Chem Phys 2009; 129:194512. [PMID: 19026071 DOI: 10.1063/1.3006032] [Citation(s) in RCA: 98] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
A theoretical study of vibrational spectral diffusion and hydrogen bond dynamics in aqueous ionic solutions is presented from first principles without employing any empirical potential models. The present calculations are based on ab initio molecular dynamics for trajectory generation and wavelet analysis of the simulated trajectories for time dependent frequency calculations. Results are obtained for two different deuterated aqueous solutions: the first one is a relatively dilute solution of a single Cl(-) ion and the second one is a concentrated solution of NaCl ( approximately 3M) dissolved in liquid D(2)O. It is found that the frequencies of OD bonds in the anion hydration shell, i.e., those which are hydrogen bonded to the chloride ion, have a higher stretch frequency than those in the bulk water. Also, on average, the frequencies of hydration shell OD modes are found to increase with increase in the anion-water hydrogen bond distance. On the dynamical side, when the vibrational spectral diffusion is calculated exclusively for the hydration shell water molecules in the first solution, the dynamics reveals three time scales: a short-time relaxation ( approximately 200 fs) corresponding to the dynamics of intact ion-water hydrogen bonds, a slower relaxation ( approximately 3 ps) corresponding to the lifetimes of chloride ion-water hydrogen bonds, and another longer-time constant ( approximately 20 ps) corresponding to the escape dynamics of water from the anion hydration shell. Existence of such three time scales for hydration shell water molecules was also reported earlier for water containing a single iodide ion using classical molecular dynamics [B. Nigro et al., J. Phys. Chem. A 110, 11237 (2006)]. Hence, the present study confirms the basic results of this earlier work using a different methodology. However, when the vibrational spectral diffusion is calculated over all the OD modes, only two time scales of approximately 150 fs and approximately 2.7 ps are found without the slowest component of approximately 20 ps. This is likely because of the very small weight that the hydration shell water molecules carry to the overall spectral diffusion in the solution containing a single ion. For the concentrated solution also, the slowest component of approximately 20 ps is not found in the spectral diffusion of all water molecules because a distinct separation between the hydration shell and bulk water in terms of their stretch frequencies does not hold at this high concentration regime. The present first principles results are compared with those of the available experiments and classical simulations.
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Affiliation(s)
- Bhabani S Mallik
- Department of Chemistry, Indian Institute of Technology, Kanpur 208016, India
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30
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Zhuang W, Hayashi T, Mukamel S. Coherent multidimensional vibrational spectroscopy of biomolecules: concepts, simulations, and challenges. Angew Chem Int Ed Engl 2009; 48:3750-81. [PMID: 19415637 PMCID: PMC3526115 DOI: 10.1002/anie.200802644] [Citation(s) in RCA: 125] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Abstract
The response of complex molecules to sequences of femtosecond infrared pulses provides a unique window into their structure, dynamics, and fluctuating environments. Herein we survey the basic principles of modern two-dimensional infrared (2DIR) spectroscopy, which analogous to those of multidimensional NMR spectroscopy. The perturbative approach for computing the nonlinear optical response of coupled localized chromophores is introduced and applied to the amide backbone transitions of proteins, liquid water, membrane lipids, and amyloid fibrils. The signals are analyzed using classical molecular dynamics simulations combined with an effective fluctuating Hamiltonian for coupled localized anharmonic vibrations whose dependence on the local electrostatic environment is parameterized by an ab initio map. Several simulation methods, (cumulant expansion of Gaussian fluctuation, quasiparticle scattering, the stochastic Liouville equations, direct numerical propagation) are surveyed. Chirality-induced techniques which dramatically enhance the resolution are demonstrated. Signatures of conformational and hydrogen-bonding fluctuations, protein folding, and chemical-exchange processes are discussed.
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Affiliation(s)
- Wei Zhuang
- Department of Chemistry, University of California at Irvine, CA 92697-2025, USA
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31
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Mallik BS, Chandra A. Vibrational Spectral Diffusion in Supercritical D2O from First Principles: An Interplay between the Dynamics of Hydrogen Bonds, Dangling OD Groups, and Inertial Rotation. J Phys Chem A 2008; 112:13518-27. [DOI: 10.1021/jp808089q] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Bhabani S. Mallik
- Department of Chemistry, Indian Institute of Technology, Kanpur, India 208016
| | - Amalendu Chandra
- Department of Chemistry, Indian Institute of Technology, Kanpur, India 208016
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32
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Skinner JL, Auer BM, Lin YS. Vibrational Line Shapes, Spectral Diffusion, and Hydrogen Bonding in Liquid Water. ADVANCES IN CHEMICAL PHYSICS 2008. [DOI: 10.1002/9780470475935.ch2] [Citation(s) in RCA: 63] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
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33
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High resolution X-ray emission spectroscopy of liquid water: The observation of two structural motifs. Chem Phys Lett 2008. [DOI: 10.1016/j.cplett.2008.04.077] [Citation(s) in RCA: 298] [Impact Index Per Article: 18.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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34
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Ghosh A, Smits M, Sovago M, Bredenbeck J, Müller M, Bonn M. Ultrafast vibrational dynamics of interfacial water. Chem Phys 2008. [DOI: 10.1016/j.chemphys.2007.12.022] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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35
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Mallik BS, Semparithi A, Chandra A. Vibrational spectral diffusion and hydrogen bond dynamics in heavy water from first principles. J Phys Chem A 2008; 112:5104-12. [PMID: 18491881 DOI: 10.1021/jp801405a] [Citation(s) in RCA: 119] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
We present a first-principles theoretical study of vibrational spectral diffusion and hydrogen bond dynamics in heavy water without using any empirical model potentials. The calculations are based on ab initio molecular dynamics simulations for trajectory generation and a time series analysis using the wavelet method for frequency calculations. It is found that, in deuterated water, although a one-to-one relation does not exist between the instantaneous frequency of an OD bond and the distance of its associated hydrogen bond, such a relation does hold on average. The dynamics of spectral diffusion is investigated by means of frequency-time correlation and spectral hole dynamics calculations. Both of these functions are found to have a short-time decay with a time scale of approximately 100 fs corresponding to dynamics of intact hydrogen bonds and a slower long-time decay with a time constant of approximately 2 ps corresponding to lifetimes of hydrogen bonds. The connection of the slower time scale to the dynamics of local structural relaxation is also discussed. The dynamics of hydrogen bond making is shown to have a rather fast time scale of approximately 100 fs; hence, it can also contribute to the short-time dynamics of spectral diffusion. A damped oscillation is also found at around 150-200 fs, which is shown to have come from underdamped intermolecular vibrations of a hydrogen-bonded water pair. Such assignments are confirmed by independent calculations of power spectra of intermolecular motion and hydrogen bond kinetics using the population correlation function formalism. The details of the time constants of frequency correlations and spectral shifts are found to depend on the frequencies of chosen OD bonds and are analyzed in terms of the dynamics of hydrogen bonds of varying strengths and also of free non-hydrogen-bonded OD groups.
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Affiliation(s)
- Bhabani S Mallik
- Department of Chemistry, Indian Institute of Technology, Kanpur 208016, India
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36
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Park S, Moilanen DE, Fayer MD. Water DynamicsThe Effects of Ions and Nanoconfinement. J Phys Chem B 2008; 112:5279-90. [DOI: 10.1021/jp7121856] [Citation(s) in RCA: 161] [Impact Index Per Article: 10.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Sungnam Park
- Department of Chemistry Stanford University, Stanford, California 94305
| | - David E. Moilanen
- Department of Chemistry Stanford University, Stanford, California 94305
| | - M. D. Fayer
- Department of Chemistry Stanford University, Stanford, California 94305
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37
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Affiliation(s)
- Minhaeng Cho
- Department of Chemistry and Center for Multidimensional Spectroscopy, Korea University, Seoul 136-701, Korea.
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38
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39
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Li S, Schmidt JR, Piryatinski A, Lawrence CP, Skinner JL. Vibrational spectral diffusion of azide in water. J Phys Chem B 2007; 110:18933-8. [PMID: 16986886 DOI: 10.1021/jp057568k] [Citation(s) in RCA: 62] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Abstract
Vibrational spectral diffusion denotes the time-dependent fluctuations of a solute's vibrational frequencies due to local environmental dynamics. Vibrational line shapes are weakly sensitive to spectral diffusion, whereas three-pulse vibrational echoes are much more sensitive. We report here on theoretical studies of spectral diffusion of the asymmetric stretch of the azide anion in heavy water. We run a classical molecular dynamics simulation of rigid azide in rigid water, and at every time step we calculate the azide's anharmonic asymmetric stretch frequency using an optimized quantum mechanics/molecular mechanics method developed earlier. This generates a frequency trajectory, which we use to calculate the absorption line shape and integrated three-pulse echo intensity. Our results for both the line width and the integrated echo intensity are in excellent agreement with experiment. Our calculated frequency time-correlation function is in excellent agreement with experiment for long times (greater than 250 fs) but differs considerably from experiment at short times; our theoretical correlation function has a very pronounced oscillation, presumably due to intermolecular azide-water hydrogen-bond stretching dynamics.
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Affiliation(s)
- Shuzhou Li
- Theoretical Chemistry Institute and Department of Chemistry, University of Wisconsin, Madison, Wisconsin 53706, USA
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40
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Li S, Schmidt JR, Corcelli SA, Lawrence CP, Skinner JL. Approaches for the calculation of vibrational frequencies in liquids: comparison to benchmarks for azide/water clusters. J Chem Phys 2007; 124:204110. [PMID: 16774322 DOI: 10.1063/1.2200690] [Citation(s) in RCA: 63] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023] Open
Abstract
Ultrafast vibrational spectroscopy experiments, together with molecular-level theoretical interpretation, can provide important information about the structure and dynamics of complex condensed phase systems, including liquids. The theoretical challenge is to calculate the instantaneous vibrational frequencies of a molecule in contact with a molecular environment, accurately and quickly, and to this end a number of different methods have been developed. In this paper we critically analyze these different methods by comparing their results to accurate benchmark calculations on azide/water clusters. We also propose an optimized quantum mechanics/molecular mechanics method, which for this problem is superior to the other methods.
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Affiliation(s)
- Shuzhou Li
- Theoretical Chemistry Institute and Department of Chemistry, University of Wisconsin, Madison, Wisconsin 53706, USA
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41
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Smits M, Ghosh A, Sterrer M, Müller M, Bonn M. Ultrafast vibrational energy transfer between surface and bulk water at the air-water interface. PHYSICAL REVIEW LETTERS 2007; 98:098302. [PMID: 17359206 DOI: 10.1103/physrevlett.98.098302] [Citation(s) in RCA: 85] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/11/2006] [Indexed: 05/14/2023]
Abstract
We report a femtosecond time-resolved study of water at the neat water-air interface. The O-H stretch vibrational lifetime of hydrogen-bonded interfacial water is measured using surface-specific 4th-order nonlinear optical spectroscopy with femtosecond infrared pulses. The vibrational lifetime in the frequency range of 3200 to 3500 cm(-1) is found to closely resemble that of bulk water, indicating ultrafast exchange of vibrational energy between surface water molecules and those in the bulk.
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Affiliation(s)
- Marc Smits
- FOM Institute for Atomic and Molecular Physics, Kruislaan 407, 1098 SJ, Amsterdam, The Netherlands
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42
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Loparo JJ, Roberts ST, Tokmakoff A. Multidimensional infrared spectroscopy of water. I. Vibrational dynamics in two-dimensional IR line shapes. J Chem Phys 2006; 125:194521. [PMID: 17129137 DOI: 10.1063/1.2382895] [Citation(s) in RCA: 159] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
In this and the following paper, we describe the ultrafast structural fluctuations and rearrangements of the hydrogen bonding network of water using two-dimensional (2D) infrared spectroscopy. 2D IR spectra covering all the relevant time scales of molecular dynamics of the hydrogen bonding network of water were studied for the OH stretching absorption of HOD in D2O. Time-dependent evolution of the 2D IR line shape serves as a spectroscopic observable that tracks how different hydrogen bonding environments interconvert while changes in spectral intensity result from vibrational relaxation and molecular reorientation of the OH dipole. For waiting times up to the vibrational lifetime of 700 fs, changes in the 2D line shape reflect the spectral evolution of OH oscillators induced by hydrogen bond dynamics. These dynamics, characterized through a set of 2D line shape analysis metrics, show a rapid 60 fs decay, an underdamped oscillation on a 130 fs time scale induced by hydrogen bond stretching, and a long time decay constant of 1.4 ps. 2D surfaces for waiting times larger than 700 fs are dominated by the effects of vibrational relaxation and the thermalization of this excess energy by the solvent bath. Our modeling based on fluctuations with Gaussian statistics is able to reproduce the changes in dispersed pump-probe and 2D IR spectra induced by these relaxation processes, but misses the asymmetry resulting from frequency-dependent spectral diffusion. The dynamical origin of this asymmetry is discussed in the companion paper.
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Affiliation(s)
- Joseph J Loparo
- Department of Chemistry, and George R. Harrison Spectroscopy Laboratory, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA
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43
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Tian G. Molecular dynamics study on the vibrational energy relaxation of O–D stretch of HOD in liquid H2O. Chem Phys 2006. [DOI: 10.1016/j.chemphys.2006.06.029] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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44
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Iglev H, Schmeisser M, Simeonidis K, Thaller A, Laubereau A. Ultrafast superheating and melting of bulk ice. Nature 2006; 439:183-6. [PMID: 16407948 DOI: 10.1038/nature04415] [Citation(s) in RCA: 93] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2005] [Accepted: 11/03/2005] [Indexed: 11/08/2022]
Abstract
The superheating of a solid to a temperature beyond its melting point, without the solid actually melting, is a well-known phenomenon. It occurs with many substances, particularly those that can readily be produced as high-quality crystals. In principle, ice should also be amenable to superheating. But the complex three-dimensional network of hydrogen bonds that holds water molecules together and gives rise to unusual solid and liquid properties strongly affects the melting behaviour of ice; in particular, ice usually contains many defects owing to the directionality of its hydrogen bonds. However, simulations are readily able to 'create' defect-free ice that can be superheated. Here we show that by exciting the OH stretching mode of water, it is possible to superheat ice. When using an ice sample at an initial temperature of 270 K, we observe an average temperature rise of 20 +/- 2 K that persists over the monitored time interval of 250 ps without melting.
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Affiliation(s)
- H Iglev
- Physik-Department, Technische Universität München, James-Franck-Strasse, D-85748 Garching, Germany.
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45
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Jansen TLC, Hayashi T, Zhuang W, Mukamel S. Stochastic Liouville equations for hydrogen-bonding fluctuations and their signatures in two-dimensional vibrational spectroscopy of water. J Chem Phys 2005; 123:114504. [PMID: 16392570 DOI: 10.1063/1.2008251] [Citation(s) in RCA: 66] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023] Open
Abstract
The effects of hydrogen-bond forming and breaking kinetics on the linear and coherent third-order infrared spectra of the OH stretch of HOD in D2O are described by Markovian, not necessarily Gaussian, fluctuations and simulated using the stochastic Liouville equations. Slow (0.5 ps) fluctuations are represented by a collective electrostatic coordinate, whereas fast (<100 fs) frequency fluctuations are described using either a second collective electrostatic coordinate or a four-state jump (FSJ) model for hydrogen-bonding configurations. Parameters for both models were obtained using a 1-ns molecular-dynamics trajectory calculated using the TIP4P force field combined with an electrostatic ab initio map. The asymmetry of the photon-echo spectra (larger linewidth on the blue side than on the red side) predicted by the FSJ is in better agreement with recent experiments.
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Affiliation(s)
- Thomas la Cour Jansen
- Institute for Theoretical Physics and Materials Science Centre, University of Groningen, The Netherlands
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46
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Schmidt JR, Corcelli SA, Skinner JL. Pronounced non-Condon effects in the ultrafast infrared spectroscopy of water. J Chem Phys 2005; 123:044513. [PMID: 16095375 DOI: 10.1063/1.1961472] [Citation(s) in RCA: 243] [Impact Index Per Article: 12.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
In the context of vibrational spectroscopy in liquids, non-Condon effects refer to the dependence of the vibrational transition dipole moment of a particular molecule on the rotational and translational coordinates of all the molecules in the liquid. For strongly hydrogen-bonded systems, such as liquid water, non-Condon effects are large. That is, the bond dipole derivative of an OH stretch depends strongly on its hydrogen-bonding environment. Previous calculations of nonlinear vibrational spectroscopy in liquids have not included these non-Condon effects. We find that for water, inclusion of these effects is important for an accurate calculation of, for example, homodyned and heterodyned three-pulse echoes. Such echo experiments have been "inverted" to obtain the OH stretch frequency time-correlation function, but by necessity the Condon and other approximations are made in this inversion procedure. Our conclusion is that for water, primarily because of strong non-Condon effects, this inversion may not lead to the correct frequency time-correlation function. Nevertheless, one can still make comparison between theory and experiment by calculating the experimental echo observables themselves.
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Affiliation(s)
- J R Schmidt
- Theoretical Chemistry Institute and Department of Chemistry, University of Wisconsin, Madison, Wisconsin 53706, USA
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47
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Corcelli SA, Skinner JL. Infrared and Raman Line Shapes of Dilute HOD in Liquid H2O and D2O from 10 to 90 °C. J Phys Chem A 2005; 109:6154-65. [PMID: 16833955 DOI: 10.1021/jp0506540] [Citation(s) in RCA: 264] [Impact Index Per Article: 13.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
A combined electronic structure/molecular dynamics approach was used to calculate infrared and isotropic Raman spectra for the OH or OD stretches of dilute HOD in D2O or H2O, respectively. The quantities needed to compute the infrared and Raman spectra were obtained from density functional theory calculations performed on clusters, generated from liquid-state configurations, containing an HOD molecule along with 4-9 solvent water molecules. The frequency, transition dipole, and isotropic transition polarizability were each empirically related to the electric field due to the solvent along the OH (or OD) bond, calculated on the H (or D) atom of interest. The frequency and transition dipole moment of the OH (or OD) stretch of the HOD molecule were found to be very sensitive to its instantaneous solvent environment, as opposed to the isotropic transition polarizability, which was found to be relatively insensitive to environment. Infrared and isotropic Raman spectra were computed within a molecular dynamics simulation by using the empirical relationships and semiclassical expressions for the line shapes. The line shapes agree well with experiment over a temperature range from 10 to 90 degrees C.
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Affiliation(s)
- S A Corcelli
- Theoretical Chemistry Institute and Department of Chemistry, University of Wisconsin, Madison, Wisconsin 53706, USA
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48
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Lian R, Crowell RA, Shkrob IA. Solvation and Thermalization of Electrons Generated by above-the-Gap (12.4 eV) Two-Photon Ionization of Liquid H2O and D2O. J Phys Chem A 2005; 109:1510-20. [PMID: 16833472 DOI: 10.1021/jp045657b] [Citation(s) in RCA: 32] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Temporal evolution of transient absorption (TA) spectra of electrons generated by above-the-gap (12.4 eV total energy) two-photon ionization of liquid H2O and D2O has been studied on femto- and picosecond time scales. The spectra were obtained at intervals of 50 nm between 0.5 and 1.7 mum. Two distinct regimes of the spectral evolution were observed: t < 1 ps and t > 1 ps. In both of these regimes, the spectral profile changes considerably with the delay time of the probe pulse. The "continuous blue shift" and the "temperature jump" models, in which the spectral profile does not change as it progressively shifts, as a whole, to the blue, are not supported by our data. Furthermore, no p-state electron, postulated by several authors to be a short-lived intermediate of the photoionization process, was observed by the end of the 300 fs, 200 nm pump pulse. For t < 1 ps, two new TA features (the 1.15 microm peak and 1.4 mum shoulder) were observed for the electron in the spectral region where O-H overtones appear in the spectra of light water. These two features were not observed for the electron in D2O. The 1.4 mum peak observed in D2O may be the isotope-shift analogue of the 1.15 microm feature in H2O. Vibronic coupling to the modes of water molecules lining the solvation cavity is a possible origin of these features. On the sub-picosecond time scale, the absorption band of solvated electron progressively shifts to the blue. At later delay times (t > 1 ps), the position of the band maximum is "locked", but the spectral profile continues to change by narrowing on the red side and broadening on the blue side; the oscillator strength is constant within 10%. The time constant of this narrowing is ca. 0.56 ps for H2O and 0.64 ps for D2O. Vibrational relaxation and time-dependent decrease in the size and sphericity of the solvation cavity are suggested as possible causes for the observed spectral transformations in both of these regimes.
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Affiliation(s)
- Rui Lian
- Chemistry Division, Argonne National Laboratory, 9700 S. Cass Avenue, Argonne, Illinois 60439, USA
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49
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Fecko CJ, Loparo JJ, Roberts ST, Tokmakoff A. Local hydrogen bonding dynamics and collective reorganization in water: Ultrafast infrared spectroscopy of HOD/D2O. J Chem Phys 2005; 122:54506. [PMID: 15740338 DOI: 10.1063/1.1839179] [Citation(s) in RCA: 268] [Impact Index Per Article: 14.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023] Open
Abstract
We present an investigation into hydrogen bonding dynamics and kinetics in water using femtosecond infrared spectroscopy of the OH stretching vibration of HOD in D(2)O. Infrared vibrational echo peak shift and polarization-selective pump-probe experiments were performed with mid-IR pulses short enough to capture all relevant dynamical processes. The experiments are self-consistently analyzed with a nonlinear response function expressed in terms of three dynamical parameters for the OH stretching vibration: the frequency correlation function, the lifetime, and the second Legendre polynomial dipole reorientation correlation function. It also accounts for vibrational-relaxation-induced excitation of intermolecular motion that appears as heating. The long time, picosecond behavior is consistent with previous work, but new dynamics are revealed on the sub-200 fs time scale. The frequency correlation function is characterized by a 50 fs decay and 180 fs beat associated with underdamped intermolecular vibrations of hydrogen bonding partners prior to 1.4 ps exponential relaxation. The reorientational correlation function observes a 50 fs librational decay prior to 3 ps diffusive reorientation. Both of these correlation functions compare favorably with the predictions from classical molecular dynamics simulations. The time-dependent behavior can be separated into short and long time scales by the 340 fs correlation time for OH frequency shifts. The fast time scales arise from dynamics that are mainly local: fluctuations in hydrogen bond distances and angles within relatively fixed intermolecular configurations. On time scales longer than the correlation time, dephasing and reorientations reflect collective reorganization of the liquid structure. Since the OH transition frequency and dipole are only weakly sensitive to these collective coordinates, this is a kinetic regime which gives an effective rate for exchange of intermolecular structures.
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Affiliation(s)
- Christopher J Fecko
- Department of Chemistry and George R. Harrison Spectroscopy Laboratory, Massachusetts Institute of Technology, Cambridge, MA 02139, USA
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Steinel T, Asbury JB, Zheng J, Fayer MD. Watching Hydrogen Bonds Break: A Transient Absorption Study of Water. J Phys Chem A 2004; 108:10957-10964. [PMID: 19096727 PMCID: PMC2604912 DOI: 10.1021/jp046711r] [Citation(s) in RCA: 227] [Impact Index Per Article: 11.4] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Ultrafast infrared transient absorption measurements of the complete hydroxyl OD stretching mode spectrum of HOD in water, from 100 fs to tens of picoseconds, observe hydrogen bond breaking and monitor the equilibration of the hydrogen bond network in water. In addition, the vibrational lifetime, the time constant for hydrogen bond breaking, and the rate of orientational relaxation are determined. The reactant and photoproduct spectra of the hydrogen bond breaking process are identified by decomposing the transient spectra into two components, the initial spectrum associated with vibrational excited states (reactants) and the long-time spectrum associated with broken hydrogen bonds (photoproducts). By properly taking into account the perturbation of the reactant spectrum decay by the growth of the photoproduct spectrum, it is found that the vibrational relaxation (1.45 ps) and orientational relaxation (1.53 ps) are wavelength independent and, therefore, independent of the degree of hydrogen bonding. Energy deposited into water by vibrational relaxation does not immediately break a hydrogen bond by predissociation nor produce a thermally equilibrated hydrogen bond distribution at an elevated temperature. Following deposition of energy by vibrational relaxation, the hydrogen bond breaking time is 800 fs, and there is a transient period of several picoseconds during which the hydrogen bond distribution is not in thermal equilibrium.
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Affiliation(s)
- Tobias Steinel
- Department of Chemistry, Stanford UniVersity, Stanford, California 94305
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