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Jeppson MA, Rasmussen Z, Castro R, Nalugwa T, Kisakye E, Mangeni W, Andama A, Jaganath D, Cattamanchi A, Mohanty SK. Integration of Electrochemical Sensing and Machine Learning to Detect Tuberculosis via Methyl Nicotinate in Patient Breath. MEDRXIV : THE PREPRINT SERVER FOR HEALTH SCIENCES 2024:2024.05.23.24307746. [PMID: 38826389 PMCID: PMC11142263 DOI: 10.1101/2024.05.23.24307746] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2024]
Abstract
Tuberculosis (TB) remains a significant global health issue; making early, accurate, and inexpensive point-of-care detection critical for effective treatment. This paper presents a clinical demonstration of an electrochemical sensor that detects methyl-nicotinate (MN), a volatile organic biomarker associated with active pulmonary tuberculosis. The sensor was initially tested on a patient cohort comprised of 57 adults in Kampala, Uganda, of whom 42 were microbiologically confirmed TB-positive and 15 TB-negative. The sensor employed a copper(II) liquid metal salt solution with a square wave voltammetry method tailored for MN detection using commercially available screen-printed electrodes. An exploratory machine learning analysis was performed using XGBOOST. Utilizing this approach, the sensor was 78% accurate with 71% sensitivity and 100% specificity. These initial results suggest the sensing methodology is effective in identifying TB from complex breath samples, providing a promising tool for non-invasive and rapid TB detection in clinical settings.
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Zheng J, Cheng X, Zhang H, Bai X, Ai R, Shao L, Wang J. Gold Nanorods: The Most Versatile Plasmonic Nanoparticles. Chem Rev 2021; 121:13342-13453. [PMID: 34569789 DOI: 10.1021/acs.chemrev.1c00422] [Citation(s) in RCA: 148] [Impact Index Per Article: 49.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
Gold nanorods (NRs), pseudo-one-dimensional rod-shaped nanoparticles (NPs), have become one of the burgeoning materials in the recent years due to their anisotropic shape and adjustable plasmonic properties. With the continuous improvement in synthetic methods, a variety of materials have been attached around Au NRs to achieve unexpected or improved plasmonic properties and explore state-of-the-art technologies. In this review, we comprehensively summarize the latest progress on Au NRs, the most versatile anisotropic plasmonic NPs. We present a representative overview of the advances in the synthetic strategies and outline an extensive catalogue of Au-NR-based heterostructures with tailored architectures and special functionalities. The bottom-up assembly of Au NRs into preprogrammed metastructures is then discussed, as well as the design principles. We also provide a systematic elucidation of the different plasmonic properties associated with the Au-NR-based structures, followed by a discussion of the promising applications of Au NRs in various fields. We finally discuss the future research directions and challenges of Au NRs.
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Affiliation(s)
- Jiapeng Zheng
- Department of Physics, The Chinese University of Hong Kong, Shatin, Hong Kong SAR 999077, China
| | - Xizhe Cheng
- Department of Physics, The Chinese University of Hong Kong, Shatin, Hong Kong SAR 999077, China
| | - Han Zhang
- Department of Physics, The Chinese University of Hong Kong, Shatin, Hong Kong SAR 999077, China
| | - Xiaopeng Bai
- Department of Physics, The Chinese University of Hong Kong, Shatin, Hong Kong SAR 999077, China
| | - Ruoqi Ai
- Department of Physics, The Chinese University of Hong Kong, Shatin, Hong Kong SAR 999077, China
| | - Lei Shao
- Beijing Computational Science Research Center, Beijing 100193, China
| | - Jianfang Wang
- Department of Physics, The Chinese University of Hong Kong, Shatin, Hong Kong SAR 999077, China
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Liu R, Hao J, Li J, Wang S, Liu H, Zhou Z, Delville MH, Cheng J, Wang K, Zhu X. Causal Inference Machine Learning Leads Original Experimental Discovery in CdSe/CdS Core/Shell Nanoparticles. J Phys Chem Lett 2020; 11:7232-7238. [PMID: 32787235 DOI: 10.1021/acs.jpclett.0c02115] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
The synthesis of CdSe/CdS core/shell nanoparticles was revisited with the help of a causal inference machine learning framework. The tadpole morphology with 1-2 tails was experimentally discovered. The causal inference model revealed the causality between the oleic acid (OA), octadecylphosphonic acid (ODPA) ligands, and the detailed tail shape of the tadpole morphology. Further, with the identified causality, a neural network was provided to predict and directly lead to the original experimental discovery of new tadpole-shaped structures. An entropy-driven nucleation theory was developed to understand both the ligand and temperature dependent experimental data and the causal inference from the machine learning framework. This work provided a vivid example of how the artificial intelligence technology, including machine learning, could benefit the materials science research for the discovery.
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Affiliation(s)
- Rulin Liu
- Shenzhen Institute of Artificial Intelligence and Robotics for Society (AIRS), The Chinese University of Hong Kong, Shenzhen, Guangdong 518172, China
| | - Junjie Hao
- Department of Electrical and Electronic Engineering, Southern University of Science and Technology, Shenzhen 518055, China
- CNRS, Univ. Bordeaux, Bordeaux INP, ICMCB, UMR 5026, Pessac F-33608, France
| | - Jiagen Li
- Shenzhen Institute of Artificial Intelligence and Robotics for Society (AIRS), The Chinese University of Hong Kong, Shenzhen, Guangdong 518172, China
| | - Shujie Wang
- Shenzhen Institute of Artificial Intelligence and Robotics for Society (AIRS), The Chinese University of Hong Kong, Shenzhen, Guangdong 518172, China
| | - Haochen Liu
- Department of Electrical and Electronic Engineering, Southern University of Science and Technology, Shenzhen 518055, China
| | - Ziming Zhou
- Department of Electrical and Electronic Engineering, Southern University of Science and Technology, Shenzhen 518055, China
| | | | - Jiaji Cheng
- School of Materials Science and Engineering, Hubei University, Wuhan 430062, China
| | - Kai Wang
- Department of Electrical and Electronic Engineering, Southern University of Science and Technology, Shenzhen 518055, China
| | - Xi Zhu
- Shenzhen Institute of Artificial Intelligence and Robotics for Society (AIRS), The Chinese University of Hong Kong, Shenzhen, Guangdong 518172, China
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Zhang Z, Liu L, Fang WH, Long R, Tokina MV, Prezhdo OV. Plasmon-Mediated Electron Injection from Au Nanorods into MoS2: Traditional versus Photoexcitation Mechanism. Chem 2018. [DOI: 10.1016/j.chempr.2018.02.025] [Citation(s) in RCA: 48] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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Chakraborty A, Fernandez AC, Som A, Mondal B, Natarajan G, Paramasivam G, Lahtinen T, Häkkinen H, Nonappa, Pradeep T. Atomically Precise Nanocluster Assemblies Encapsulating Plasmonic Gold Nanorods. Angew Chem Int Ed Engl 2018; 57:6522-6526. [PMID: 29607588 DOI: 10.1002/anie.201802420] [Citation(s) in RCA: 41] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2018] [Indexed: 12/27/2022]
Abstract
The self-assembled structures of atomically precise, ligand-protected noble metal nanoclusters leading to encapsulation of plasmonic gold nanorods (GNRs) is presented. Unlike highly sophisticated DNA nanotechnology, this strategically simple hydrogen bonding-directed self-assembly of nanoclusters leads to octahedral nanocrystals encapsulating GNRs. Specifically, the p-mercaptobenzoic acid (pMBA)-protected atomically precise silver nanocluster, Na4 [Ag44 (pMBA)30 ], and pMBA-functionalized GNRs were used. High-resolution transmission and scanning transmission electron tomographic reconstructions suggest that the geometry of the GNR surface is responsible for directing the assembly of silver nanoclusters via H-bonding, leading to octahedral symmetry. The use of water-dispersible gold nanoclusters, Au≈250 (pMBA)n and Au102 (pMBA)44 , also formed layered shells encapsulating GNRs. Such cluster assemblies on colloidal particles are a new category of precision hybrids with diverse possibilities.
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Affiliation(s)
- Amrita Chakraborty
- DST Unit of Nanoscience and Thematic Unit of Excellence, Department of Chemistry, Indian Institute of Technology Madras, Chennai, 600036, India
| | - Ann Candice Fernandez
- DST Unit of Nanoscience and Thematic Unit of Excellence, Department of Chemistry, Indian Institute of Technology Madras, Chennai, 600036, India.,Current address, Department of Chemistry, University of Massachusetts, 710 N. Pleasant Street, Amherst, MA, 01003, USA
| | - Anirban Som
- DST Unit of Nanoscience and Thematic Unit of Excellence, Department of Chemistry, Indian Institute of Technology Madras, Chennai, 600036, India
| | - Biswajit Mondal
- DST Unit of Nanoscience and Thematic Unit of Excellence, Department of Chemistry, Indian Institute of Technology Madras, Chennai, 600036, India
| | - Ganapati Natarajan
- DST Unit of Nanoscience and Thematic Unit of Excellence, Department of Chemistry, Indian Institute of Technology Madras, Chennai, 600036, India
| | - Ganesan Paramasivam
- DST Unit of Nanoscience and Thematic Unit of Excellence, Department of Chemistry, Indian Institute of Technology Madras, Chennai, 600036, India
| | - Tanja Lahtinen
- Departments of Chemistry and Physics, Nanoscience Centre, University of Jyväskylä, Survontie 9, 40014, Jyväskylä, Finland
| | - Hannu Häkkinen
- Departments of Chemistry and Physics, Nanoscience Centre, University of Jyväskylä, Survontie 9, 40014, Jyväskylä, Finland
| | - Nonappa
- Departments of Applied Physics and Bioproducts & Biosystems, Aalto University, Puumiehenkuja 2, P.O. Box 15100, 00076, Aalto, Finland
| | - Thalappil Pradeep
- DST Unit of Nanoscience and Thematic Unit of Excellence, Department of Chemistry, Indian Institute of Technology Madras, Chennai, 600036, India
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Chakraborty A, Fernandez AC, Som A, Mondal B, Natarajan G, Paramasivam G, Lahtinen T, Häkkinen H, Nonappa, Pradeep T. Atomically Precise Nanocluster Assemblies Encapsulating Plasmonic Gold Nanorods. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201802420] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Amrita Chakraborty
- DST Unit of Nanoscience and Thematic Unit of ExcellenceDepartment of ChemistryIndian Institute of Technology Madras Chennai 600036 India
| | - Ann Candice Fernandez
- DST Unit of Nanoscience and Thematic Unit of ExcellenceDepartment of ChemistryIndian Institute of Technology Madras Chennai 600036 India
- Current addressDepartment of ChemistryUniversity of Massachusetts 710 N. Pleasant Street Amherst MA 01003 USA
| | - Anirban Som
- DST Unit of Nanoscience and Thematic Unit of ExcellenceDepartment of ChemistryIndian Institute of Technology Madras Chennai 600036 India
| | - Biswajit Mondal
- DST Unit of Nanoscience and Thematic Unit of ExcellenceDepartment of ChemistryIndian Institute of Technology Madras Chennai 600036 India
| | - Ganapati Natarajan
- DST Unit of Nanoscience and Thematic Unit of ExcellenceDepartment of ChemistryIndian Institute of Technology Madras Chennai 600036 India
| | - Ganesan Paramasivam
- DST Unit of Nanoscience and Thematic Unit of ExcellenceDepartment of ChemistryIndian Institute of Technology Madras Chennai 600036 India
| | - Tanja Lahtinen
- Departments of Chemistry and Physics, Nanoscience CentreUniversity of Jyväskylä Survontie 9 40014 Jyväskylä Finland
| | - Hannu Häkkinen
- Departments of Chemistry and Physics, Nanoscience CentreUniversity of Jyväskylä Survontie 9 40014 Jyväskylä Finland
| | - Nonappa
- Departments of Applied Physics and Bioproducts & BiosystemsAalto University Puumiehenkuja 2, P.O. Box 15100 00076 Aalto Finland
| | - Thalappil Pradeep
- DST Unit of Nanoscience and Thematic Unit of ExcellenceDepartment of ChemistryIndian Institute of Technology Madras Chennai 600036 India
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Yu N, Ghosh A, Hagan MF. Faceted particles formed by the frustrated packing of anisotropic colloids on curved surfaces. SOFT MATTER 2016; 12:8990-8998. [PMID: 27748486 PMCID: PMC5287255 DOI: 10.1039/c6sm01498d] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/14/2023]
Abstract
We use computer simulations and simple theoretical models to analyze the morphologies that result when rod-like particles end-attach onto a curved surface, creating a finite-thickness monolayer aligned with the surface normal. This geometry leads to two forms of frustration, one associated with the incompatibility of hexagonal order on surfaces with Gaussian curvature, and the second reflecting the deformation of a layer with finite thickness on a surface with non-zero mean curvature. We show that the latter effect leads to a faceting mechanism. Above threshold values of inter-particle attraction strength and surface mean curvature, the adsorbed layer undergoes a transition from orientational disorder to an ordered state that is demarcated by reproducible patterns of line defects. The number of facets is controlled by the competition between line defect energy and intra-facet strain. Tuning control parameters thus leads to a rich variety of morphologies, including icosahedral particles and irregular polyhedra. In addition to suggesting a new strategy for the synthesis of aspherical particles with tunable symmetries, our results may shed light on recent experiments in which rod-like HIV GAG proteins assemble around nanoscale particles.
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Affiliation(s)
- Naiyin Yu
- Martin Fisher School of Physics, Brandeis University, Waltham, MA, USA
| | - Abhijit Ghosh
- Martin Fisher School of Physics, Brandeis University, Waltham, MA, USA
| | - Michael F Hagan
- Martin Fisher School of Physics, Brandeis University, Waltham, MA, USA
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Hughes ZE, Walsh TR. Non-covalent adsorption of amino acid analogues on noble-metal nanoparticles: influence of edges and vertices. Phys Chem Chem Phys 2016; 18:17525-33. [DOI: 10.1039/c6cp02323a] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
First-principles calculations on nanoscale-sized noble metal nanoparticles demonstrate that planes, edges and vertices show different noncovalent adsorption propensities depending on the adsorbate functional group.
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Affiliation(s)
- Zak E. Hughes
- Institute for Frontier Materials
- Deakin University
- Geelong VIC 3216
- Australia
| | - Tiffany R. Walsh
- Institute for Frontier Materials
- Deakin University
- Geelong VIC 3216
- Australia
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