1
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Yakovlev AG, Taisova AS. Participation of spirilloxanthin in excitation energy transfer in reaction centers from purple bacteria Rhodospirillum rubrum. PHOTOSYNTHESIS RESEARCH 2025; 163:13. [PMID: 39870888 DOI: 10.1007/s11120-024-01126-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/26/2024] [Accepted: 12/12/2024] [Indexed: 01/29/2025]
Abstract
The femtosecond dynamics of energy transfer from light-excited spirilloxanthin (Spx) to bacteriochlorophyll (BChl) a in the reaction centers (RCs) of purple photosynthetic bacteria Rhodospirillum rubrum was studied. According to crio-electron microscopy data, Spx is located near accessory BChl a in the B-branch of cofactors. Spx was excited by 25 fs laser pulses at 490 nm, and difference absorption spectra were recorded in the range 500-700 nm. To reveal the dynamics of individual states, we applied global analysis using different kinetic schemes. We found that the energy transfer Spx → BChl a occurs during 0.22 ps with a low efficiency of ~ 31%. The monomeric BChl a acts as the primary energy acceptor, presumably in the B-branch of cofactors. Then the energy is transferred to the BChl a dimer within 0.25 ps and subsequently used for charge separation. As a result of internal conversion in Spx, the majority (~ 69%) of the excitation energy transfers in 0.2 ps from the singlet-excited state S2 to the states S1 and S*, which, in turn, relax to the ground state in 1.5 and 9 ps, respectively. We showed that the S1 and S* states in Spx are not involved in energy transfer to BChl a. The found parameters of energy transfer Spx→BChl a turned out to be close to those in the light-harvesting complexes LH1 of Rhodospirillum rubrum. The sequence of events in Spx after its excitation is discussed.
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Affiliation(s)
- Andrei G Yakovlev
- Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Leninskie Gory, Moscow, Russia, 119991.
| | - Alexandra S Taisova
- Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Leninskie Gory, Moscow, Russia, 119991
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2
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Šebelík V, Duffy CD, Keil E, Polívka T, Hauer J. Understanding Carotenoid Dynamics via the Vibronic Energy Relaxation Approach. J Phys Chem B 2022; 126:3985-3994. [PMID: 35609122 PMCID: PMC9190705 DOI: 10.1021/acs.jpcb.2c00996] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2022] [Revised: 05/03/2022] [Indexed: 11/30/2022]
Abstract
Carotenoids are an integral part of natural photosynthetic complexes, with tasks ranging from light harvesting to photoprotection. Their underlying energy deactivation network of optically dark and bright excited states is extremely efficient: after excitation of light with up to 2.5 eV of photon energy, the system relaxes back to ground state on a time scale of a few picoseconds. In this article, we summarize how a model based on the vibrational energy relaxation approach (VERA) explains the main characteristics of relaxation dynamics after one-photon excitation with special emphasis on the so-called S* state. Lineshapes after two-photon excitation are beyond the current model of VERA. We outline this future line of research in our article. In terms of experimental method development, we discuss which techniques are needed to better describe energy dissipation effects in carotenoids and within the first solvation shell.
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Affiliation(s)
- Václav Šebelík
- Dynamical
Spectroscopy, Department of Chemistry, Technical
University of Munich, Lichtenbergstraße 4, 85748 Garching bei Munich, Germany
| | - Christopher D.
P. Duffy
- Digital
Environment Research Institute, Queen Mary
University of London, London E1 4NS, U.K.
| | - Erika Keil
- Dynamical
Spectroscopy, Department of Chemistry, Technical
University of Munich, Lichtenbergstraße 4, 85748 Garching bei Munich, Germany
| | - Tomáš Polívka
- Department
of Physics, Faculty of Science, University
of South Bohemia, Branišovská 1760, 370
05 České Budějovice, Czech Republic
- Biology
Centre, Institute of Plant Molecular Biology, Czech Academy of Sciences, Branišovská 1160/31, 370 05 České Budějovice, Czech Republic
| | - Jürgen Hauer
- Dynamical
Spectroscopy, Department of Chemistry, Technical
University of Munich, Lichtenbergstraße 4, 85748 Garching bei Munich, Germany
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3
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Solowan HP, Malý P, Brixner T. Direct comparison of molecular-beam versus liquid-phase pump-probe and two-dimensional spectroscopy on the example of azulene. J Chem Phys 2022; 157:044201. [DOI: 10.1063/5.0088365] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Although azulene's anomalous fluorescence originating from S2 rather than from S1 is the textbook example for the violation of Kasha's rule, the understanding of the underlying processes is still a subject of investigation. Here, we use action-based coherent two-dimensional electronic spectroscopy (2DES) to measure a single Liouville-space response pathway from S0 via S1 to the S2 state of azulene. We directly compare this sequential excitation in liquid phase detecting S2 fluorescence and in a molecular beam detecting photoionized cations, using the S2 anomalous emission to our advantage. We complement the 2DES study by pump-probe measurements of S1 excitation dynamics, including vibrational relaxation and passage through a conical intersection. The direct comparison of liquid and gas phase allows us to assess the effect of the solvent and the interplay of intra- and inter-molecular energy relaxation.
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Affiliation(s)
| | - Pavel Malý
- Institute of Physical and Theoretical Chemistry, Julius-Maximilians-Universität Würzburg, Germany
| | - Tobias Brixner
- Institut fuer Physikalische und Theoretische Chemie, Julius-Maximilians-Universität Würzburg, Germany
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4
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Jakučionis M, Gaižiu Nas I, Šulskus J, Abramavičius D. Simulation of Ab Initio Optical Absorption Spectrum of β-Carotene with Fully Resolved S0 and S2 Vibrational Normal Modes. J Phys Chem A 2022; 126:180-189. [PMID: 34985272 DOI: 10.1021/acs.jpca.1c06115] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The electronic absorption spectrum of β-carotene (β-Car) is studied using quantum chemistry and quantum dynamics simulations. Vibrational normal modes were computed in optimized geometries of the electronic ground state S0 and the optically bright excited S2 state using the time-dependent density functional theory. By expressing the S2-state normal modes in terms of the ground-state modes, we find that no one-to-one correspondence between the ground- and excited-state vibrational modes exists. Using the ab initio results, we simulated the β-Car absorption spectrum with all 282 vibrational modes in a model solvent at 300 K using the time-dependent Dirac-Frenkel variational principle and are able to qualitatively reproduce the full absorption line shape. By comparing the 282-mode model with the prominent 2-mode model, widely used to interpret carotenoid experiments, we find that the full 282-mode model better describes the high-frequency progression of carotenoid absorption spectra; hence, vibrational modes become highly mixed during the S0 → S2 optical excitation. The obtained results suggest that electronic energy dissipation is mediated by numerous vibrational modes.
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Affiliation(s)
- Mantas Jakučionis
- Institute of Chemical Physics, Vilnius University, Sauletekio Avenue 9-III, LT-10222 Vilnius, Lithuania
| | - Ignas Gaižiu Nas
- Institute of Chemical Physics, Vilnius University, Sauletekio Avenue 9-III, LT-10222 Vilnius, Lithuania
| | - Juozas Šulskus
- Institute of Chemical Physics, Vilnius University, Sauletekio Avenue 9-III, LT-10222 Vilnius, Lithuania
| | - Darius Abramavičius
- Institute of Chemical Physics, Vilnius University, Sauletekio Avenue 9-III, LT-10222 Vilnius, Lithuania
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5
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Son M, Moya R, Pinnola A, Bassi R, Schlau-Cohen GS. Protein-Protein Interactions Induce pH-Dependent and Zeaxanthin-Independent Photoprotection in the Plant Light-Harvesting Complex, LHCII. J Am Chem Soc 2021; 143:17577-17586. [PMID: 34648708 DOI: 10.1021/jacs.1c07385] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Plants use energy from the sun yet also require protection against the generation of deleterious photoproducts from excess energy. Photoprotection in green plants, known as nonphotochemical quenching (NPQ), involves thermal dissipation of energy and is activated by a series of interrelated factors: a pH drop in the lumen, accumulation of the carotenoid zeaxanthin (Zea), and formation of arrays of pigment-containing antenna complexes. However, understanding their individual contributions and their interactions has been challenging, particularly for the antenna arrays, which are difficult to manipulate in vitro. Here, we achieved systematic and discrete control over the array size for the principal antenna complex, light-harvesting complex II, using near-native in vitro membranes called nanodiscs. Each of the factors had a distinct influence on the level of dissipation, which was characterized by measurements of fluorescence quenching and ultrafast chlorophyll-to-carotenoid energy transfer. First, an increase in array size led to a corresponding increase in dissipation; the dramatic changes in the chlorophyll dynamics suggested that this is due to an allosteric conformational change of the protein. Second, a pH drop increased dissipation but exclusively in the presence of protein-protein interactions. Third, no Zea dependence was identified which suggested that Zea regulates a distinct aspect of NPQ. Collectively, these results indicate that each factor provides a separate type of control knob for photoprotection, which likely enables a flexible and tunable response to solar fluctuations.
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Affiliation(s)
- Minjung Son
- Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
| | - Raymundo Moya
- Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
| | - Alberta Pinnola
- Department of Biology and Biotechnology, University of Pavia, 27100 Pavia, Italy
| | - Roberto Bassi
- Department of Biotechnology, University of Verona, 37134 Verona, Italy.,Accademia Nazionale di Lincei, 00165 Rome, Italy
| | - Gabriela S Schlau-Cohen
- Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
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6
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Collini E. 2D Electronic Spectroscopic Techniques for Quantum Technology Applications. THE JOURNAL OF PHYSICAL CHEMISTRY. C, NANOMATERIALS AND INTERFACES 2021; 125:13096-13108. [PMID: 34276867 PMCID: PMC8282191 DOI: 10.1021/acs.jpcc.1c02693] [Citation(s) in RCA: 44] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/25/2021] [Revised: 05/22/2021] [Indexed: 05/14/2023]
Abstract
2D electronic spectroscopy (2DES) techniques have gained particular interest given their capability of following ultrafast coherent and noncoherent processes in real-time. Although the fame of 2DES is still majorly linked to the investigation of energy and charge transport in biological light-harvesting complexes, 2DES is now starting to be recognized as a particularly valuable tool for studying transport processes in artificial nanomaterials and nanodevices. Particularly meaningful is the possibility of assessing coherent mechanisms active in the transport of excitation energy in these materials toward possible quantum technology applications. The diverse nature of these new target samples poses significant challenges and calls for a critical rethinking of the technique and its different realizations. With the confluence of promising new applications and rapidly developing technical capabilities, the enormous potential of 2DES techniques to impact the field of nanosystems, quantum technologies, and quantum devices is here delineated.
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Affiliation(s)
- Elisabetta Collini
- Department of Chemical Sciences, University of Padova, via Marzolo 1, 35131 Padova, Italy
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7
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Marcolin G, Collini E. Solvent-Dependent Characterization of Fucoxanthin through 2D Electronic Spectroscopy Reveals New Details on the Intramolecular Charge-Transfer State Dynamics. J Phys Chem Lett 2021; 12:4833-4840. [PMID: 33999637 PMCID: PMC8279730 DOI: 10.1021/acs.jpclett.1c00851] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2021] [Accepted: 05/12/2021] [Indexed: 05/27/2023]
Abstract
The electronic state manifolds of carotenoids and their relaxation dynamics are the object of intense investigation because most of the subtle details regulating their photophysics are still unknown. In order to contribute to this quest, here, we present a solvent-dependent 2D Electronic Spectroscopy (2DES) characterization of fucoxanthin, a carbonyl carotenoid involved in the light-harvesting process of brown algae. The 2DES technique allows probing its ultrafast relaxation dynamics in the first 1000 fs after photoexcitation with a 10 fs time resolution. The obtained results help shed light on the dynamics of the first electronic state manifold and, in particular, on an intramolecular charge-transfer state (ICT), whose photophysical properties are particularly elusive given its (almost) dark nature.
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8
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Kollenz P, Herten DP, Buckup T. Unravelling the Kinetic Model of Photochemical Reactions via Deep Learning. J Phys Chem B 2020; 124:6358-6368. [PMID: 32589422 DOI: 10.1021/acs.jpcb.0c04299] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
Time-resolved spectroscopies have been playing an essential role in the elucidation of the fundamental mechanisms of light-driven processes, particularly in exploring relaxation models for electronically excited molecules. However, the determination of such models from experimentally obtained time-resolved and spectrally resolved data still demands a high degree of intuition, frequently poses numerical challenges, and is often not free from ambiguities. Here, we demonstrate the analysis of time-resolved laser spectroscopy data via a deep learning network to obtain the correct relaxation kinetic model. In its current design, the presented Deep Spectroscopy Kinetic Analysis Network (DeepSKAN) can predict kinetic models (involved states and relaxation pathways) consisting of up to five states, which results in 103 possible different classes, by estimating the probability of occurrence of a given kinetic model class. DeepSKAN was trained with synthetic time-resolved spectra spanning over 4 orders of magnitude in time with a unitless time axis, thereby demonstrating its potential as a universal approach for analyzing data from various time-resolved spectroscopy techniques in different time ranges. By adding the probabilities of each pathway of the top-k models normalized by the total probability, we can determine the relaxation pathways for a given data set with high certainty (up to 99%). Due to its architecture and training, DeepSKAN is robust against experimental noise and typical preanalysis errors like time-zero corrections. Application of DeepSKAN to experimental data is successfully demonstrated for three different photoinduced processes: transient absorption of the retinal isomerization, transient IR spectroscopy of the relaxation of the photoactivated DRONPA, and transient absorption of the dynamics in lycopene. This approach delivers kinetic models and could be a unifying asset in several areas of spectroscopy.
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Affiliation(s)
- Philipp Kollenz
- Physikalisch Chemisches Institut, Ruprecht-Karls University, D-69120 Heidelberg, Germany
| | - Dirk-Peter Herten
- Physikalisch Chemisches Institut, Ruprecht-Karls University, D-69120 Heidelberg, Germany.,Institute of Cardiovascular Sciences & School of Chemistry, College of Medical and Dental Sciences, University of Birmingham, Edgbaston, B152TT, Birmingham, United Kingdom.,Centre of Membrane Proteins and Receptors (COMPARE), Universities of Birmingham and Nottingham, Midlands, United Kingdom
| | - Tiago Buckup
- Physikalisch Chemisches Institut, Ruprecht-Karls University, D-69120 Heidelberg, Germany
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9
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Malý P, Lüttig J, Turkin A, Dostál J, Lambert C, Brixner T. From wavelike to sub-diffusive motion: exciton dynamics and interaction in squaraine copolymers of varying length. Chem Sci 2019; 11:456-466. [PMID: 34084345 PMCID: PMC8146531 DOI: 10.1039/c9sc04367e] [Citation(s) in RCA: 31] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2019] [Revised: 10/15/2020] [Accepted: 11/18/2019] [Indexed: 12/13/2022] Open
Abstract
Exciton transport and exciton-exciton interactions in molecular aggregates and polymers are of great importance in natural photosynthesis, organic electronics, and related areas of research. Both the experimental observation and theoretical description of these processes across time and length scales, including the transition from the initial wavelike motion to the following long-range exciton transport, are highly challenging. Therefore, while exciton dynamics at small scales are often treated explicitly, long-range exciton transport is typically described phenomenologically by normal diffusion. In this work, we study the transition from wavelike to diffusive motion of interacting exciton pairs in squaraine copolymers of varying length. To this end we use a combination of the recently introduced exciton-exciton-interaction two-dimensional (EEI2D) electronic spectroscopy and microscopic theoretical modelling. As we show by comparison with the model, the experimentally observed kinetics include three phases, wavelike motion dominated by immediate exciton-exciton annihilation (10-100 fs), sub-diffusive behavior (0.1-10 ps), and excitation relaxation (0.01-1 ns). We demonstrate that the key quantity for the transition from wavelike to diffusive dynamics is the exciton delocalization length relative to the length of the polymer: while in short polymers wavelike motion of rapidly annihilating excitons dominates, in long polymers the excitons become locally trapped and exhibit sub-diffusive behavior. Our findings indicate that exciton transport through conjugated systems emerging from the excitonic structure is generally not governed by normal diffusion. Instead, to characterize the material transport properties, the diffusion presence and character should be determined.
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Affiliation(s)
- Pavel Malý
- Institut für Physikalische und Theoretische Chemie, Universität Würzburg Am Hubland 97074 Würzburg Germany
| | - Julian Lüttig
- Institut für Physikalische und Theoretische Chemie, Universität Würzburg Am Hubland 97074 Würzburg Germany
| | - Arthur Turkin
- Institut für Organische Chemie, Universität Würzburg Am Hubland 97074 Würzburg Germany
| | - Jakub Dostál
- Institut für Physikalische und Theoretische Chemie, Universität Würzburg Am Hubland 97074 Würzburg Germany
| | - Christoph Lambert
- Institut für Organische Chemie, Universität Würzburg Am Hubland 97074 Würzburg Germany
- Center for Nanosystems Chemistry (CNC), Universität Würzburg Theodor-Boveri-Weg 97074 Würzburg Germany
| | - Tobias Brixner
- Institut für Physikalische und Theoretische Chemie, Universität Würzburg Am Hubland 97074 Würzburg Germany
- Center for Nanosystems Chemistry (CNC), Universität Würzburg Theodor-Boveri-Weg 97074 Würzburg Germany
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10
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Toa ZSD, deGolian MH, Jumper CC, Hiller RG, Scholes GD. Consistent Model of Ultrafast Energy Transfer in Peridinin Chlorophyll-a Protein Using Two-Dimensional Electronic Spectroscopy and Förster Theory. J Phys Chem B 2019; 123:6410-6420. [DOI: 10.1021/acs.jpcb.9b04324] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Zi S. D. Toa
- Department of Chemistry, Princeton University, Washington Road, Princeton, New Jersey 08540, United States
| | - Mary H. deGolian
- Department of Chemistry, Princeton University, Washington Road, Princeton, New Jersey 08540, United States
| | - Chanelle C. Jumper
- Department of Chemistry, Princeton University, Washington Road, Princeton, New Jersey 08540, United States
| | - Roger G. Hiller
- Department of Biology, Faculty of Science and Engineering, Macquarie University, Sydney NSW 2109, Australia
| | - Gregory D. Scholes
- Department of Chemistry, Princeton University, Washington Road, Princeton, New Jersey 08540, United States
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11
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Son M, Pinnola A, Bassi R, Schlau-Cohen GS. The Electronic Structure of Lutein 2 Is Optimized for Light Harvesting in Plants. Chem 2019. [DOI: 10.1016/j.chempr.2018.12.016] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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12
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Segatta F, Gdor I, Réhault J, Taioli S, Friedman N, Sheves M, Rivalta I, Ruhman S, Cerullo G, Garavelli M. Ultrafast Carotenoid to Retinal Energy Transfer in Xanthorhodopsin Revealed by the Combination of Transient Absorption and Two-Dimensional Electronic Spectroscopy. Chemistry 2018; 24:12084-12092. [PMID: 30048017 DOI: 10.1002/chem.201803525] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2018] [Revised: 07/26/2018] [Indexed: 11/10/2022]
Abstract
By comparing two-dimensional electronic spectroscopy (2DES) and Pump-Probe (PP) measurements on xanthorhodopsin (XR) and reduced-xanthorhodopsin (RXR) complexes, the ultrafast carotenoid-to-retinal energy transfer pathway is revealed, at very early times, by an excess of signal amplitude at the associated cross-peak and by the carotenoid bleaching reduction due to its ground state recovery. The combination of the measured 2DES and PP spectroscopic data with theoretical modelling allows a clear identification of the main experimental signals and a comprehensive interpretation of their origin and dynamics. The remarkable velocity of the energy transfer, despite the non-negligible energy separation between the two chromophores, and the analysis of the underlying transport mechanism, highlight the role played by the ground state carotenoid vibrations in assisting the process.
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Affiliation(s)
- Francesco Segatta
- European Center for Theoretical Studies in Nuclear Physics and Related Areas (ECT*-FBK), 38123, Trento, Italy.,Department of Industrial Chemistry, University of Bologna, Viale Risorgimento 4, 40136, Bologna, Italy
| | - Itay Gdor
- Department of Physical Chemistry, The Hebrew University, Jerusalem, 9190401, Israel
| | - Julien Réhault
- Department für Chemie und Biochemie, University of Bern, Freiestrasse 3, 3012, Bern, Switzerland
| | - Simone Taioli
- European Center for Theoretical Studies in Nuclear Physics and Related Areas (ECT*-FBK), 38123, Trento, Italy
| | - Noga Friedman
- Department of Organic Chemistry, Weizmann Institute of Science, Rehovot, 76100, Israel
| | - Mordechai Sheves
- Department of Organic Chemistry, Weizmann Institute of Science, Rehovot, 76100, Israel
| | - Ivan Rivalta
- Laboratoire de Chimie UMR 5182, Université Lyon, ENS de Lyon, CNRS, Unversité Lyon 1, Allée d'Italie 46, FR-69342, Lyon, France
| | - Sanford Ruhman
- Department of Physical Chemistry, The Hebrew University, Jerusalem, 9190401, Israel
| | - Giulio Cerullo
- Department of Physics, Politecnico di Milano, Piazza Leonardo da Vinci 32, 20133, Milano, Italy
| | - Marco Garavelli
- Department of Industrial Chemistry, University of Bologna, Viale Risorgimento 4, 40136, Bologna, Italy
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13
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Abstract
The subtle details of the mechanism of energy flow from carotenoids to chlorophylls in biological light-harvesting complexes are still not fully understood, especially in the ultrafast regime. Here we focus on the antenna complex peridinin–chlorophyll a–protein (PCP), known for its remarkable efficiency of excitation energy transfer from carotenoids—peridinins—to chlorophylls. PCP solutions are studied by means of 2D electronic spectroscopy in different experimental conditions. Together with a global kinetic analysis and multiscale quantum chemical calculations, these data allow us to comprehensively address the contribution of the potential pathways of energy flow in PCP. These data support dominant energy transfer from peridinin S2 to chlorophyll Qy state via an ultrafast coherent mechanism. The coherent superposition of the two states is functional to drive population to the final acceptor state, adding an important piece of information in the quest for connections between coherent phenomena and biological functions. Energy transfer from carotenoids to chlorophylls in light-harvesting is still not fully understood, especially in the ultrafast regime. Here, the authors investigate the coherent dynamics of this process in peridinin-chlorophyll a-protein complex via 2D electronic spectroscopy and quantum chemical calculations.
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14
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Thyrhaug E, Lincoln CN, Branchi F, Cerullo G, Perlík V, Šanda F, Lokstein H, Hauer J. Carotenoid-to-bacteriochlorophyll energy transfer through vibronic coupling in LH2 from Phaeosprillum molischianum. PHOTOSYNTHESIS RESEARCH 2018; 135:45-54. [PMID: 28523607 PMCID: PMC5783993 DOI: 10.1007/s11120-017-0398-3] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/31/2017] [Accepted: 05/09/2017] [Indexed: 06/07/2023]
Abstract
The peripheral light-harvesting antenna complex (LH2) of purple photosynthetic bacteria is an ideal testing ground for models of structure-function relationships due to its well-determined molecular structure and ultrafast energy deactivation. It has been the target for numerous studies in both theory and ultrafast spectroscopy; nevertheless, certain aspects of the convoluted relaxation network of LH2 lack a satisfactory explanation by conventional theories. For example, the initial carotenoid-to-bacteriochlorophyll energy transfer step necessary on visible light excitation was long considered to follow the Förster mechanism, even though transfer times as short as 40 femtoseconds (fs) have been observed. Such transfer times are hard to accommodate by Förster theory, as the moderate coupling strengths found in LH2 suggest much slower transfer within this framework. In this study, we investigate LH2 from Phaeospirillum (Ph.) molischianum in two types of transient absorption experiments-with narrowband pump and white-light probe resulting in 100 fs time resolution, and with degenerate broadband 10 fs pump and probe pulses. With regard to the split Qx band in this system, we show that vibronically mediated transfer explains both the ultrafast carotenoid-to-B850 transfer, and the almost complete lack of transfer to B800. These results are beyond Förster theory, which predicts an almost equal partition between the two channels.
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Affiliation(s)
- Erling Thyrhaug
- Photonics Institute, TU Wien, Gußhausstraße 27, 1040, Vienna, Austria
| | - Craig N Lincoln
- Photonics Institute, TU Wien, Gußhausstraße 27, 1040, Vienna, Austria
| | - Federico Branchi
- Dipartimento di Fisica, IFN-CNR, Politecnico di Milano, Piazza L. da Vinci, 32, 20133, Milan, Italy
| | - Giulio Cerullo
- Dipartimento di Fisica, IFN-CNR, Politecnico di Milano, Piazza L. da Vinci, 32, 20133, Milan, Italy
| | - Václav Perlík
- Faculty of Mathematics and Physics, Institute of Physics, Charles University, Ke Karlovu 5, 12116, Prague, Czech Republic
| | - František Šanda
- Faculty of Mathematics and Physics, Institute of Physics, Charles University, Ke Karlovu 5, 12116, Prague, Czech Republic
| | - Heiko Lokstein
- Department of Chemical Physics and Optics, Charles University, Ke Karlovu 3, 12116, Praha 2, Czech Republic
| | - Jürgen Hauer
- Photonics Institute, TU Wien, Gußhausstraße 27, 1040, Vienna, Austria.
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15
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Balevičius V, Lincoln CN, Viola D, Cerullo G, Hauer J, Abramavicius D. Effects of tunable excitation in carotenoids explained by the vibrational energy relaxation approach. PHOTOSYNTHESIS RESEARCH 2018; 135:55-64. [PMID: 28741055 DOI: 10.1007/s11120-017-0423-6] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/01/2017] [Accepted: 07/09/2017] [Indexed: 05/20/2023]
Abstract
Carotenoids are fundamental building blocks of natural light harvesters with convoluted and ultrafast energy deactivation networks. In order to disentangle such complex relaxation dynamics, several studies focused on transient absorption measurements and their dependence on the pump wavelength. However, such findings are inconclusive and sometimes contradictory. In this study, we compare internal conversion dynamics in [Formula: see text]-carotene, pumped at the first, second, and third vibronic progression peak. Instead of employing data fitting algorithms based on global analysis of the transient absorption spectra, we apply a fully quantum mechanical model to treat the high-frequency symmetric carbon-carbon (C=C and C-C) stretching modes explicitly. This model successfully describes observed population dynamics as well as spectral line shapes in their time-dependence and allows us to reach two conclusions: Firstly, the broadening of the induced absorption upon excess excitation is an effect of vibrational cooling in the first excited state ([Formula: see text]). Secondly, the internal conversion rate between the second excited state ([Formula: see text]) and [Formula: see text] crucially depends on the relative curve displacement. The latter point serves as a new perspective on solvent- and excitation wavelength-dependent experiments and lifts contradictions between several studies found in literature.
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Affiliation(s)
- Vytautas Balevičius
- School of Biological and Chemical Sciences, Queen Mary University of London, Mile End Road, London, E1 4NS, UK
| | - Craig N Lincoln
- Photonics Institute, TU Wien, Gusshausstr. 27, 1040, Vienna, Austria
| | - Daniele Viola
- IFN-CNR, Dipartimento di Fisica, Politecnico di Milano, Piazza Leonardo da Vinci 32, 20133, Milan, Italy
| | - Giulio Cerullo
- IFN-CNR, Dipartimento di Fisica, Politecnico di Milano, Piazza Leonardo da Vinci 32, 20133, Milan, Italy
| | - Jürgen Hauer
- Photonics Institute, TU Wien, Gusshausstr. 27, 1040, Vienna, Austria
| | - Darius Abramavicius
- Department of Theoretical Physics, Vilnius University, Sauletekio al. 9-III, 10222, Vilnius, Lithuania.
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16
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Zhang Z, Huerta-Viga A, Tan HS. Two-dimensional electronic-Raman spectroscopy. OPTICS LETTERS 2018; 43:939-942. [PMID: 29444032 DOI: 10.1364/ol.43.000939] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/21/2017] [Accepted: 01/18/2018] [Indexed: 06/08/2023]
Abstract
We present a new technique, two-dimensional electronic-Raman spectroscopy (2DER), which combines femtosecond stimulated Raman spectroscopy and a pulse-shaper-assisted 2D spectroscopic scheme for the actinic pump. The 2DER spectrum presents the initial actinic excitation wavelength with nanometer spectral resolution in the first axis and the detected stimulated Raman spectra in the second axis. We measured the correlation of the electronic and vibrational states in the photosynthetic accessory pigment β-carotene and reveal its photoexcited state manifold.
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17
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Gurchiek JK, Bao H, Domínguez-Martín MA, McGovern SE, Marquardt CE, Roscioli JD, Ghosh S, Kerfeld CA, Beck WF. Fluorescence and Excited-State Conformational Dynamics of the Orange Carotenoid Protein. J Phys Chem B 2018; 122:1792-1800. [DOI: 10.1021/acs.jpcb.7b09435] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
| | | | | | | | | | | | | | - Cheryl A. Kerfeld
- Molecular
Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
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18
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Oliver TAA. Recent advances in multidimensional ultrafast spectroscopy. ROYAL SOCIETY OPEN SCIENCE 2018; 5:171425. [PMID: 29410844 PMCID: PMC5792921 DOI: 10.1098/rsos.171425] [Citation(s) in RCA: 52] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/19/2017] [Accepted: 12/20/2017] [Indexed: 05/14/2023]
Abstract
Multidimensional ultrafast spectroscopies are one of the premier tools to investigate condensed phase dynamics of biological, chemical and functional nanomaterial systems. As they reach maturity, the variety of frequency domains that can be explored has vastly increased, with experimental techniques capable of correlating excitation and emission frequencies from the terahertz through to the ultraviolet. Some of the most recent innovations also include extreme cross-peak spectroscopies that directly correlate the dynamics of electronic and vibrational states. This review article summarizes the key technological advances that have permitted these recent advances, and the insights gained from new multidimensional spectroscopic probes.
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Affiliation(s)
- Thomas A. A. Oliver
- School of Chemistry, Cantock's Close, University of Bristol, Bristol BS8 1TS, UK
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19
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Roscioli JD, Ghosh S, LaFountain AM, Frank HA, Beck WF. Quantum Coherent Excitation Energy Transfer by Carotenoids in Photosynthetic Light Harvesting. J Phys Chem Lett 2017; 8:5141-5147. [PMID: 28968122 DOI: 10.1021/acs.jpclett.7b01791] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
It remains an open question whether quantum coherence and molecular excitons created by delocalization of electronic excited states are essential features of the mechanisms that enable efficient light capture and excitation energy transfer to reaction centers in photosynthetic organisms. The peridinin-chlorophyll a protein from marine dinoflagellates is an example of a light-harvesting system with tightly clustered antenna chromophores in which quantum coherence has long been suspected, but unusually it features the carotenoid peridinin as the principal light absorber for mid-visible photons. We report that broad-band two-dimensional electronic spectroscopy indeed reveals the initial presence of exciton relaxation pathways that enable transfer of excitation from peridinin to chlorophyll a in <20 fs, but the quantum coherence that permits this is very short-lived. Strongly coupled excited-state vibrational distortions of the peridinins trigger a dynamic transition of the electronic structure of the system and a rapid conversion to incoherent energy transfer mechanisms.
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Affiliation(s)
- Jerome D Roscioli
- Department of Chemistry, Michigan State University , East Lansing, Michigan 48824-1322, United States
| | - Soumen Ghosh
- Department of Chemistry, Michigan State University , East Lansing, Michigan 48824-1322, United States
| | - Amy M LaFountain
- Department of Chemistry, University of Connecticut , Storrs, Connecticut 06269-3036, United States
| | - Harry A Frank
- Department of Chemistry, University of Connecticut , Storrs, Connecticut 06269-3036, United States
| | - Warren F Beck
- Department of Chemistry, Michigan State University , East Lansing, Michigan 48824-1322, United States
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20
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Kuznetsova V, Chábera P, Litvín R, Polívka T, Fuciman M. Effect of Isomerization on Excited-State Dynamics of Carotenoid Fucoxanthin. J Phys Chem B 2017; 121:4438-4447. [DOI: 10.1021/acs.jpcb.7b02526] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Valentyna Kuznetsova
- Institute
of Physics and Biophysics, Faculty of Science, University of South Bohemia, Branišovská 1760, 37005 České Budějovice, Czech Republic
| | - Pavel Chábera
- Division
of Chemical Physics, Lund University, P.O. Box 124, Lund SE-22100, Sweden
| | - Radek Litvín
- Institute
of Physics and Biophysics, Faculty of Science, University of South Bohemia, Branišovská 1760, 37005 České Budějovice, Czech Republic
- Institute
of Plant Molecular Biology, Biological Centre, Czech Academy of Sciences, 37005 České Budějovice, Czech Republic
| | - Tomáš Polívka
- Institute
of Physics and Biophysics, Faculty of Science, University of South Bohemia, Branišovská 1760, 37005 České Budějovice, Czech Republic
- Institute
of Plant Molecular Biology, Biological Centre, Czech Academy of Sciences, 37005 České Budějovice, Czech Republic
| | - Marcel Fuciman
- Institute
of Physics and Biophysics, Faculty of Science, University of South Bohemia, Branišovská 1760, 37005 České Budějovice, Czech Republic
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21
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Fox KF, Balevičius V, Chmeliov J, Valkunas L, Ruban AV, Duffy CDP. The carotenoid pathway: what is important for excitation quenching in plant antenna complexes? Phys Chem Chem Phys 2017; 19:22957-22968. [DOI: 10.1039/c7cp03535g] [Citation(s) in RCA: 41] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Plant light-harvesting is regulated by the Non-Photochemical Quenching (NPQ) mechanism involving the slow trapping of excitation energy by carotenoids in the Photosystem II (PSII) antenna in response to high light.
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Affiliation(s)
- Kieran F. Fox
- School of Biological and Chemical Sciences
- Queen Mary University of London
- London E1 4NS
- UK
| | - Vytautas Balevičius
- School of Biological and Chemical Sciences
- Queen Mary University of London
- London E1 4NS
- UK
| | - Jevgenij Chmeliov
- Department of Theoretical Physics
- Faculty of Physics
- Vilnius University
- Sauletekio Ave. 9
- 10222 Vilnius
| | - Leonas Valkunas
- Department of Theoretical Physics
- Faculty of Physics
- Vilnius University
- Sauletekio Ave. 9
- 10222 Vilnius
| | - Alexander V. Ruban
- School of Biological and Chemical Sciences
- Queen Mary University of London
- London E1 4NS
- UK
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22
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Balevičius V, Abramavicius D, Polívka T, Galestian
Pour A, Hauer J. A Unified Picture of S* in Carotenoids. J Phys Chem Lett 2016; 7:3347-3352. [PMID: 27509302 PMCID: PMC5011297 DOI: 10.1021/acs.jpclett.6b01455] [Citation(s) in RCA: 60] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2016] [Accepted: 08/10/2016] [Indexed: 05/29/2023]
Abstract
In π-conjugated chain molecules such as carotenoids, coupling between electronic and vibrational degrees of freedom is of central importance. It governs both dynamic and static properties, such as the time scales of excited state relaxation as well as absorption spectra. In this work, we treat vibronic dynamics in carotenoids on four electronic states (|S0⟩, |S1⟩, |S2⟩, and |Sn⟩) in a physically rigorous framework. This model explains all features previously associated with the intensely debated S* state. Besides successfully fitting transient absorption data of a zeaxanthin homologue, this model also accounts for previous results from global target analysis and chain length-dependent studies. Additionally, we are able to incorporate findings from pump-deplete-probe experiments, which were incompatible to any pre-existing model. Thus, we present the first comprehensive and unified interpretation of S*-related features, explaining them by vibronic transitions on either S1, S0, or both, depending on the chain length of the investigated carotenoid.
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Affiliation(s)
- Vytautas Balevičius
- Department
of Theoretical Physics, Faculty of Physics, Vilnius University, Sauletekio Avenue 9, Building 3, LT-10222 Vilnius, Lithuania
| | - Darius Abramavicius
- Department
of Theoretical Physics, Faculty of Physics, Vilnius University, Sauletekio Avenue 9, Building 3, LT-10222 Vilnius, Lithuania
| | - Tomáš Polívka
- Institute
of Physics and Biophysics, Faculty of Science, University of South Bohemia, Branišovská 1760, 37005 České Budějovice, Czech
Republic
| | | | - Jürgen Hauer
- Photonics
Institute, TU Wien, Gusshausstrasse
27, 1040 Vienna, Austria
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23
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Maiuri M, Réhault J, Carey AM, Hacking K, Garavelli M, Lüer L, Polli D, Cogdell RJ, Cerullo G. Ultra-broadband 2D electronic spectroscopy of carotenoid-bacteriochlorophyll interactions in the LH1 complex of a purple bacterium. J Chem Phys 2016; 142:212433. [PMID: 26049453 DOI: 10.1063/1.4919056] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022] Open
Abstract
We investigate the excitation energy transfer (EET) pathways in the photosynthetic light harvesting 1 (LH1) complex of purple bacterium Rhodospirillum rubrum with ultra-broadband two-dimensional electronic spectroscopy (2DES). We employ a 2DES apparatus in the partially collinear geometry, using a passive birefringent interferometer to generate the phase-locked pump pulse pair. This scheme easily lends itself to two-color operation, by coupling a sub-10 fs visible pulse with a sub-15-fs near-infrared pulse. This unique pulse combination allows us to simultaneously track with extremely high temporal resolution both the dynamics of the photoexcited carotenoid spirilloxanthin (Spx) in the visible range and the EET between the Spx and the B890 bacterio-chlorophyll (BChl), whose Qx and Qy transitions peak at 585 and 881 nm, respectively, in the near-infrared. Global analysis of the one-color and two-color 2DES maps unravels different relaxation mechanisms in the LH1 complex: (i) the initial events of the internal conversion process within the Spx, (ii) the parallel EET from the first bright state S2 of the Spx towards the Qx state of the B890, and (iii) the internal conversion from Qx to Qy within the B890.
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Affiliation(s)
- Margherita Maiuri
- CNR-IFN, Dipartimento di Fisica, Politecnico di Milano, P.zza L. da Vinci 32, Milano 20133, Italy
| | - Julien Réhault
- CNR-IFN, Dipartimento di Fisica, Politecnico di Milano, P.zza L. da Vinci 32, Milano 20133, Italy
| | - Anne-Marie Carey
- Glasgow Biomedical Research Centre, IBLS, University of Glasgow, 126 Place, Glasgow G12 8TA, Scotland, United Kingdom
| | - Kirsty Hacking
- Glasgow Biomedical Research Centre, IBLS, University of Glasgow, 126 Place, Glasgow G12 8TA, Scotland, United Kingdom
| | - Marco Garavelli
- Dipartimento di Chimica "G. Ciamician," Università di Bologna, Via Selmi 2, IT-40126 Bologna, Italy
| | - Larry Lüer
- Madrid Institute for Advanced Studies, IMDEA Nanociencia, Madrid, Spain
| | - Dario Polli
- CNR-IFN, Dipartimento di Fisica, Politecnico di Milano, P.zza L. da Vinci 32, Milano 20133, Italy
| | - Richard J Cogdell
- Glasgow Biomedical Research Centre, IBLS, University of Glasgow, 126 Place, Glasgow G12 8TA, Scotland, United Kingdom
| | - Giulio Cerullo
- CNR-IFN, Dipartimento di Fisica, Politecnico di Milano, P.zza L. da Vinci 32, Milano 20133, Italy
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24
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Perlík V, Seibt J, Cranston LJ, Cogdell RJ, Lincoln CN, Savolainen J, Šanda F, Mančal T, Hauer J. Vibronic coupling explains the ultrafast carotenoid-to-bacteriochlorophyll energy transfer in natural and artificial light harvesters. J Chem Phys 2016; 142:212434. [PMID: 26049454 DOI: 10.1063/1.4919548] [Citation(s) in RCA: 44] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The initial energy transfer steps in photosynthesis occur on ultrafast timescales. We analyze the carotenoid to bacteriochlorophyll energy transfer in LH2 Marichromatium purpuratum as well as in an artificial light-harvesting dyad system by using transient grating and two-dimensional electronic spectroscopy with 10 fs time resolution. We find that Förster-type models reproduce the experimentally observed 60 fs transfer times, but overestimate coupling constants, which lead to a disagreement with both linear absorption and electronic 2D-spectra. We show that a vibronic model, which treats carotenoid vibrations on both electronic ground and excited states as part of the system's Hamiltonian, reproduces all measured quantities. Importantly, the vibronic model presented here can explain the fast energy transfer rates with only moderate coupling constants, which are in agreement with structure based calculations. Counterintuitively, the vibrational levels on the carotenoid electronic ground state play the central role in the excited state population transfer to bacteriochlorophyll; resonance between the donor-acceptor energy gap and the vibrational ground state energies is the physical basis of the ultrafast energy transfer rates in these systems.
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Affiliation(s)
- Václav Perlík
- Institute of Physics, Faculty of Mathematics and Physics, Charles University in Prague, Ke Karlovu 5, Prague 121 16, Czech Republic
| | - Joachim Seibt
- Institute of Physics, Faculty of Mathematics and Physics, Charles University in Prague, Ke Karlovu 5, Prague 121 16, Czech Republic
| | - Laura J Cranston
- Institute of Molecular Cell and System Biology, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow Biomedical Research Centre, 120 University Place, Glasgow G12 8TA, Scotland
| | - Richard J Cogdell
- Institute of Molecular Cell and System Biology, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow Biomedical Research Centre, 120 University Place, Glasgow G12 8TA, Scotland
| | - Craig N Lincoln
- Photonics Institute, Vienna University of Technology, Gusshausstrasse 27, 1040 Vienna, Austria
| | - Janne Savolainen
- Department of Physical Chemistry II, Ruhr-University Bochum, 44780 Bochum, Germany
| | - František Šanda
- Institute of Physics, Faculty of Mathematics and Physics, Charles University in Prague, Ke Karlovu 5, Prague 121 16, Czech Republic
| | - Tomáš Mančal
- Institute of Physics, Faculty of Mathematics and Physics, Charles University in Prague, Ke Karlovu 5, Prague 121 16, Czech Republic
| | - Jürgen Hauer
- Photonics Institute, Vienna University of Technology, Gusshausstrasse 27, 1040 Vienna, Austria
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25
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Staleva H, Zeeshan M, Chábera P, Partali V, Sliwka HR, Polívka T. Ultrafast Dynamics of Long Homologues of Carotenoid Zeaxanthin. J Phys Chem A 2015; 119:11304-12. [PMID: 26502350 DOI: 10.1021/acs.jpca.5b08460] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Three zeaxanthin homologues with conjugation lengths N of 15, 19, and 23 denoted as Z15, Z19, and Z23 were studied by femtosecond transient absorption spectroscopy, and the results were compared to those obtained for zeaxanthin (Z11). The energies of S2 decrease from 20 450 cm(-1) (Z11) to 18 280 cm(-1) (Z15), 17 095 cm(-1) (Z19), and 16 560 cm(-1) (Z23). Fitting the N dependence of the S2 energies allowed the estimation of [Formula: see text], the S2 energy of a hypothetical infinite zeaxanthin, to be ∼14 000 cm(-1). Exciting the 0-0 band of the S2 state produces characteristic S1-Sn spectral profiles in transient absorption spectra with maxima at 556 nm (Z11), 630 nm (Z15), 690 nm (Z19), and 740 nm (Z23). The red shift of the S1-Sn transition with increasing conjugation length is caused by a decrease in the S1 state energy, resulting in S1 lifetimes of 9 ps (Z11), 0.9 ps (Z15), 0.35 ps (Z19), and 0.19 ps (Z23). Essentially the same lifetimes were obtained after excess energy excitation at 400 nm, but S1-Sn becomes broader, indicating a larger conformation disorder in the S1 state after 400 nm excitation compared to excitation into the 0-0 band of the S2 state. An S* signal was observed in all samples, but only for Z15, Z19, and Z23 does the S* signal decay with a lifetime different from that of the S1 state. The S* lifetimes are 2.9 and 1.6 ps for Z15 and Z19, respectively. In Z23 the S* signal needs two decay components yielding lifetimes of 0.24 and 2.3 ps. The S* signal is more pronounced after 400 nm excitation.
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Affiliation(s)
- Hristina Staleva
- Institute of Physics and Biophysics, Faculty of Science, University of South Bohemia , Branišovská 1760, 37005 České Budějovice, Czech Republic
| | - Muhammad Zeeshan
- Department of Chemistry, Norwegian University of Science and Technology , 7491 Trondheim, Norway
| | - Pavel Chábera
- Department of Chemical Physics, Lund University , SE-221 00 Lund, Sweden
| | - Vassilia Partali
- Department of Chemistry, Norwegian University of Science and Technology , 7491 Trondheim, Norway
| | - Hans-Richard Sliwka
- Department of Chemistry, Norwegian University of Science and Technology , 7491 Trondheim, Norway
| | - Tomáš Polívka
- Institute of Physics and Biophysics, Faculty of Science, University of South Bohemia , Branišovská 1760, 37005 České Budějovice, Czech Republic
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26
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Tempelaar R, Halpin A, Johnson PJM, Cai J, Murphy RS, Knoester J, Miller RJD, Jansen TLC. Laser-Limited Signatures of Quantum Coherence. J Phys Chem A 2015; 120:3042-8. [DOI: 10.1021/acs.jpca.5b10312] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Roel Tempelaar
- Zernike
Institute for Advanced Materials, University of Groningen, Nijenborgh
4, 9747 AG Groningen, The Netherlands
| | - Alexei Halpin
- Institute
for Optical Sciences and Departments of Chemistry and Physics, University of Toronto, 80 St. George Street, Toronto, Ontario M5S 3H6, Canada
| | - Philip J. M. Johnson
- Institute
for Optical Sciences and Departments of Chemistry and Physics, University of Toronto, 80 St. George Street, Toronto, Ontario M5S 3H6, Canada
| | - Jianxin Cai
- Department
of Chemistry and Biochemistry, University of Regina, 3737 Wascana
Parkway, Regina, SK S4S 0A2, Canada
| | - R. Scott Murphy
- Department
of Chemistry and Biochemistry, University of Regina, 3737 Wascana
Parkway, Regina, SK S4S 0A2, Canada
| | - Jasper Knoester
- Zernike
Institute for Advanced Materials, University of Groningen, Nijenborgh
4, 9747 AG Groningen, The Netherlands
| | - R. J. Dwayne Miller
- Institute
for Optical Sciences and Departments of Chemistry and Physics, University of Toronto, 80 St. George Street, Toronto, Ontario M5S 3H6, Canada
| | - Thomas L. C. Jansen
- Zernike
Institute for Advanced Materials, University of Groningen, Nijenborgh
4, 9747 AG Groningen, The Netherlands
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27
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Ghosh S, Bishop MM, Roscioli JD, Mueller JJ, Shepherd NC, LaFountain AM, Frank HA, Beck WF. Femtosecond Heterodyne Transient-Grating Studies of Nonradiative Decay of the S2 (11Bu+) State of β-Carotene: Contributions from Dark Intermediates and Double-Quantum Coherences. J Phys Chem B 2015; 119:14905-24. [DOI: 10.1021/acs.jpcb.5b09405] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Soumen Ghosh
- Department
of Chemistry, Michigan State University, East Lansing, Michigan 48824-1322, United States
| | - Michael M. Bishop
- Department
of Chemistry, Michigan State University, East Lansing, Michigan 48824-1322, United States
| | - Jerome D. Roscioli
- Department
of Chemistry, Michigan State University, East Lansing, Michigan 48824-1322, United States
| | - Jenny Jo Mueller
- Department
of Chemistry, Michigan State University, East Lansing, Michigan 48824-1322, United States
| | - Nolan C. Shepherd
- Department
of Chemistry, Michigan State University, East Lansing, Michigan 48824-1322, United States
| | - Amy M. LaFountain
- Department
of Chemistry, University of Connecticut, Storrs, Connecticut 06269-3060, United States
| | - Harry A. Frank
- Department
of Chemistry, University of Connecticut, Storrs, Connecticut 06269-3060, United States
| | - Warren F. Beck
- Department
of Chemistry, Michigan State University, East Lansing, Michigan 48824-1322, United States
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28
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Krčmář J, Gelin MF, Domcke W. Simulation of femtosecond two-dimensional electronic spectra of conical intersections. J Chem Phys 2015; 143:074308. [PMID: 26298135 DOI: 10.1063/1.4928685] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We have simulated femtosecond two-dimensional (2D) electronic spectra for an excited-state conical intersection using the wave-function version of the equation-of-motion phase-matching approach. We show that 2D spectra at fixed values of the waiting time provide information on the structure of the vibronic eigenstates of the conical intersection, while the evolution of the spectra with the waiting time reveals predominantly ground-state wave-packet dynamics. The results show that 2D spectra of conical intersection systems differ significantly from those obtained for chromophores with well separated excited-state potential-energy surfaces. The spectral signatures which can be attributed to conical intersections are discussed.
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Affiliation(s)
- Jindřich Krčmář
- Department of Chemistry, Technische Universität München, D-85747 Garching, Germany
| | - Maxim F Gelin
- Department of Chemistry, Technische Universität München, D-85747 Garching, Germany
| | - Wolfgang Domcke
- Department of Chemistry, Technische Universität München, D-85747 Garching, Germany
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29
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Šanda F, Perlík V, Lincoln CN, Hauer J. Center Line Slope Analysis in Two-Dimensional Electronic Spectroscopy. J Phys Chem A 2015; 119:10893-909. [PMID: 26463085 PMCID: PMC4637928 DOI: 10.1021/acs.jpca.5b08909] [Citation(s) in RCA: 47] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
![]()
Center line slope (CLS) analysis
in 2D infrared spectroscopy has been extensively used to extract frequency–frequency
correlation functions of vibrational transitions. We apply this concept
to 2D electronic spectroscopy, where CLS is a measure of electronic
gap fluctuations. The two domains, infrared and electronic, possess
differences: In the infrared, the frequency fluctuations are classical,
often slow and Gaussian. In contrast, electronic spectra are subject
to fast spectral diffusion and affected by underdamped vibrational
wavepackets in addition to Stokes shift. All these effects result
in non-Gaussian peak profiles. Here, we extend CLS-analysis beyond
Gaussian line shapes and test the developed methodology on a solvated
molecule, zinc phthalocyanine. We find that CLS facilitates the interpretation
of 2D electronic spectra by reducing their complexity to one dimension.
In this way, CLS provides a highly sensitive measure of model parameters
describing electronic–vibrational and electronic–solvent
interaction.
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Affiliation(s)
- František Šanda
- Faculty of Mathematics and Physics, Institute of Physics, Charles University , Ke Karlovu 5, Prague, 121 16 Czech Republic
| | - Václav Perlík
- Faculty of Mathematics and Physics, Institute of Physics, Charles University , Ke Karlovu 5, Prague, 121 16 Czech Republic
| | - Craig N Lincoln
- Photonics Institute, TU Wien , Gusshausstrasse 27, 1040 Vienna, Austria
| | - Jürgen Hauer
- Photonics Institute, TU Wien , Gusshausstrasse 27, 1040 Vienna, Austria
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30
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Oliver TAA, Fleming GR. Following Coupled Electronic-Nuclear Motion through Conical Intersections in the Ultrafast Relaxation of β-Apo-8′-carotenal. J Phys Chem B 2015; 119:11428-41. [DOI: 10.1021/acs.jpcb.5b04893] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
Affiliation(s)
- Thomas A. A. Oliver
- Physical
Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
| | - Graham R. Fleming
- Physical
Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
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31
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Beck WF, Bishop MM, Roscioli JD, Ghosh S, Frank HA. Excited state conformational dynamics in carotenoids: Dark intermediates and excitation energy transfer. Arch Biochem Biophys 2015; 572:175-183. [DOI: 10.1016/j.abb.2015.02.016] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2014] [Revised: 01/24/2015] [Accepted: 02/13/2015] [Indexed: 11/26/2022]
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32
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Fuller FD, Ogilvie JP. Experimental implementations of two-dimensional fourier transform electronic spectroscopy. Annu Rev Phys Chem 2015; 66:667-90. [PMID: 25664841 DOI: 10.1146/annurev-physchem-040513-103623] [Citation(s) in RCA: 178] [Impact Index Per Article: 17.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
Two-dimensional electronic spectroscopy (2DES) reveals connections between an optical excitation at a given frequency and the signals it creates over a wide range of frequencies. These connections, manifested as cross-peak locations and their lineshapes, reflect the underlying electronic and vibrational structure of the system under study. How these spectroscopic signatures evolve in time reveals the system dynamics and provides a detailed picture of coherent and incoherent processes. 2DES is rapidly maturing and has already found numerous applications, including studies of photosynthetic energy transfer and photochemical reactions and many-body interactions in nanostructured materials. Many systems of interest contain electronic transitions spanning the ultraviolet to the near infrared and beyond. Most 2DES measurements to date have explored a relatively small frequency range. We discuss the challenges of implementing 2DES and compare and contrast different approaches in terms of their information content, ease of implementation, and potential for broadband measurements.
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Affiliation(s)
- Franklin D Fuller
- Department of Physics, University of Michigan, Ann Arbor, Michigan 48109;
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33
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Balevičius V, Pour AG, Savolainen J, Lincoln CN, Lukeš V, Riedle E, Valkunas L, Abramavicius D, Hauer J. Vibronic energy relaxation approach highlighting deactivation pathways in carotenoids. Phys Chem Chem Phys 2015; 17:19491-9. [DOI: 10.1039/c5cp00856e] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Energy relaxation between two electronic states of a molecule is mediated by a set of relevant vibrational states.
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Affiliation(s)
- Vytautas Balevičius
- Department of Theoretical Physics
- Faculty of Physics
- Vilnius University
- LT-10222 Vilnius
- Lithuania
| | | | - Janne Savolainen
- Department of Physical Chemistry II
- Ruhr-University Bochum
- 44780 Bochum
- Germany
| | - Craig N. Lincoln
- Photonics Institute
- Vienna University of Technology
- 1040 Vienna
- Austria
| | - Vladimír Lukeš
- Department of Chemical Physics
- Slovak University of Technology
- 81237 Bratislava
- Slovakia
| | - Eberhard Riedle
- Lehrstuhl für BioMolekulare Optik
- Ludwig-Maximilians-University
- 80538 Munich
- Germany
| | - Leonas Valkunas
- Department of Theoretical Physics
- Faculty of Physics
- Vilnius University
- LT-10222 Vilnius
- Lithuania
| | - Darius Abramavicius
- Department of Theoretical Physics
- Faculty of Physics
- Vilnius University
- LT-10222 Vilnius
- Lithuania
| | - Jürgen Hauer
- Photonics Institute
- Vienna University of Technology
- 1040 Vienna
- Austria
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34
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Ehlers F, Scholz M, Schimpfhauser J, Bienert J, Oum K, Lenzer T. Collisional relaxation of apocarotenals: identifying the S* state with vibrationally excited molecules in the ground electronic state S0*. Phys Chem Chem Phys 2015; 17:10478-88. [DOI: 10.1039/c4cp05600k] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The S* signal of carotenoids corresponds to vibrationally hot molecules in the ground electronic state S0*.
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Affiliation(s)
- Florian Ehlers
- Georg-August-Universität Göttingen
- Institut für Physikalische Chemie
- 37077 Göttingen
- Germany
| | - Mirko Scholz
- Universität Siegen
- Physikalische Chemie 2
- 57076 Siegen
- Germany
| | | | - Jürgen Bienert
- Max-Planck-Institut für biophysikalische Chemie
- 37077 Göttingen
- Germany
| | - Kawon Oum
- Universität Siegen
- Physikalische Chemie 2
- 57076 Siegen
- Germany
| | - Thomas Lenzer
- Universität Siegen
- Physikalische Chemie 2
- 57076 Siegen
- Germany
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35
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Réhault J, Maiuri M, Oriana A, Cerullo G. Two-dimensional electronic spectroscopy with birefringent wedges. THE REVIEW OF SCIENTIFIC INSTRUMENTS 2014; 85:123107. [PMID: 25554272 DOI: 10.1063/1.4902938] [Citation(s) in RCA: 72] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/21/2023]
Abstract
We present a simple experimental setup for performing two-dimensional (2D) electronic spectroscopy in the partially collinear pump-probe geometry. The setup uses a sequence of birefringent wedges to create and delay a pair of phase-locked, collinear pump pulses, with extremely high phase stability and reproducibility. Continuous delay scanning is possible without any active stabilization or position tracking, and allows to record rapidly and easily 2D spectra. The setup works over a broad spectral range from the ultraviolet to the near-IR, it is compatible with few-optical-cycle pulses and can be easily reconfigured to two-colour operation. A simple method for scattering suppression is also introduced. As a proof of principle, we present degenerate and two-color 2D spectra of the light-harvesting complex 1 of purple bacteria.
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Affiliation(s)
- Julien Réhault
- IFN-CNR, Dipartimento di Fisica, Politecnico di Milano, Piazza Leonardo da Vinci 32, 20133 Milano, Italy
| | - Margherita Maiuri
- IFN-CNR, Dipartimento di Fisica, Politecnico di Milano, Piazza Leonardo da Vinci 32, 20133 Milano, Italy
| | - Aurelio Oriana
- IFN-CNR, Dipartimento di Fisica, Politecnico di Milano, Piazza Leonardo da Vinci 32, 20133 Milano, Italy
| | - Giulio Cerullo
- IFN-CNR, Dipartimento di Fisica, Politecnico di Milano, Piazza Leonardo da Vinci 32, 20133 Milano, Italy
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36
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De Re E, Schlau-Cohen GS, Leverenz RL, Huxter VM, Oliver TAA, Mathies RA, Fleming GR. Insights into the structural changes occurring upon photoconversion in the orange carotenoid protein from broadband two-dimensional electronic spectroscopy. J Phys Chem B 2014; 118:5382-9. [PMID: 24779893 DOI: 10.1021/jp502120h] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
Abstract
Carotenoids play an essential role in photoprotection, interacting with other pigments to safely dissipate excess absorbed energy as heat. In cyanobacteria, the short time scale photoprotective mechanisms involve the photoactive orange carotenoid protein (OCP), which binds a single carbonyl carotenoid. Blue-green light induces the photoswitching of OCP from its ground state form (OCPO) to a metastable photoproduct (OCPR). OCPR can bind to the phycobilisome antenna and induce fluorescence quenching. The photoswitching is accompanied by structural and functional changes at the level of the protein and of the bound carotenoid. Here, we use broadband two-dimensional electronic spectroscopy to study the differences in excited state dynamics of the carotenoid in the two forms of OCP. Our results provide insight into the origin of the pronounced vibrational lineshape and oscillatory dynamics observed in linear absorption and 2D electronic spectroscopy of OCPO and the large inhomogeneous broadening in OCPR, with consequences for the chemical function of the two forms.
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Affiliation(s)
- Eleonora De Re
- Applied Science and Technology Graduate Group, University of California , Berkeley, California 94720, United States
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37
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Hauer J, Maiuri M, Viola D, Lukes V, Henry S, Carey AM, Cogdell RJ, Cerullo G, Polli D. Explaining the temperature dependence of spirilloxanthin's S* signal by an inhomogeneous ground state model. J Phys Chem A 2013; 117:6303-10. [PMID: 23577754 PMCID: PMC3725610 DOI: 10.1021/jp4011372] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
![]()
We
investigate the nature of the S* excited state in carotenoids by performing
a series of pump–probe experiments with sub-20 fs time resolution
on spirilloxanthin in a polymethyl-methacrylate matrix varying the
sample temperature. Following photoexcitation, we observe sub-200
fs internal conversion of the bright S2 state into the
lower-lying S1 and S* states, which in turn relax to the
ground state on a picosecond time scale. Upon cooling down the sample
to 77 K, we observe a systematic decrease of the S*/S1 ratio.
This result can be explained by assuming two thermally populated ground
state isomers. The higher lying one generates the S* state, which
can then be effectively frozen out by cooling. These findings are
supported by quantum chemical modeling and provide strong evidence
for the existence and importance of ground state isomers in the photophysics
of carotenoids.
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Affiliation(s)
- J Hauer
- Photonics Institute, Vienna University of Technology, Gusshausstrasse 27, 1040 Vienna, Austria
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38
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Christensson N, Žídek K, Magdaong NCM, LaFountain AM, Frank HA, Zigmantas D. Origin of the Bathochromic Shift of Astaxanthin in Lobster Protein: 2D Electronic Spectroscopy Investigation of β-Crustacyanin. J Phys Chem B 2013; 117:11209-19. [DOI: 10.1021/jp401873k] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Affiliation(s)
- Niklas Christensson
- Faculty of Physics, University of Vienna, Strudlhofgasse 4, 1090 Vienna,
Austria
| | - Karel Žídek
- Department of Chemical
Physics, Lund University, Box 124, 21000,
Lund, Sweden
| | - Nikki Cecil M. Magdaong
- Department of
Chemistry, University of Connecticut, Storrs,
Connecticut 06269-3060,
United States
| | - Amy M. LaFountain
- Department of
Chemistry, University of Connecticut, Storrs,
Connecticut 06269-3060,
United States
| | - Harry A. Frank
- Department of
Chemistry, University of Connecticut, Storrs,
Connecticut 06269-3060,
United States
| | - Donatas Zigmantas
- Department of Chemical
Physics, Lund University, Box 124, 21000,
Lund, Sweden
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39
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Ostroumov EE, Mulvaney RM, Cogdell RJ, Scholes GD. Broadband 2D Electronic Spectroscopy Reveals a Carotenoid Dark State in Purple Bacteria. Science 2013; 340:52-6. [DOI: 10.1126/science.1230106] [Citation(s) in RCA: 127] [Impact Index Per Article: 10.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
Abstract
Although the energy transfer processes in natural light-harvesting systems have been intensively studied for the past 60 years, certain details of the underlying mechanisms remain controversial. We performed broadband two-dimensional (2D) electronic spectroscopy measurements on light-harvesting proteins from purple bacteria and isolated carotenoids in order to characterize in more detail the excited-state manifold of carotenoids, which channel energy to bacteriochlorophyll molecules. The data revealed a well-resolved signal consistent with a previously postulated carotenoid dark state, the presence of which was confirmed by global kinetic analysis. The results point to this state’s role in mediating energy flow from carotenoid to bacteriochlorophyll.
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40
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Kosumi D, Maruta S, Horibe T, Nagaoka Y, Fujii R, Sugisaki M, Cogdell RJ, Hashimoto H. Ultrafast excited state dynamics of spirilloxanthin in solution and bound to core antenna complexes: Identification of the S* and T1 states. J Chem Phys 2012; 137:064505. [DOI: 10.1063/1.4737129] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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41
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Liu WL, Zheng ZR, Zhang JP, Wu WZ, Li AH, Zhang W, Huo MM, Liu ZG, Zhu RB, Zhao LC, Su WH. White-light continuum probed femtosecond time-resolved absorption spectroscopic measurement of β-carotene under high pressure. Chem Phys Lett 2012. [DOI: 10.1016/j.cplett.2012.02.053] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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42
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Richards GH, Wilk KE, Curmi PMG, Quiney HM, Davis JA. Coherent Vibronic Coupling in Light-Harvesting Complexes from Photosynthetic Marine Algae. J Phys Chem Lett 2012; 3:272-277. [PMID: 26698327 DOI: 10.1021/jz201600f] [Citation(s) in RCA: 40] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
Observations of long-lived coherences in photosynthetic light-harvesting complexes utilize short pulses with broad spectral bandwidths to coherently excite multiple transitions and coherent superpositions. In order to identify the role that such quantum effects might play in efficient energy transfer, however, an alternative approach is required. We have developed a technique for two-color photon echo spectroscopy to selectively excite the pathway of interest and measure its evolution in the absence of any other excitation. We use this technique to excite a coherence pathway in phycocyanin-645 from cryptophyte algae and measure the dynamics of this coherence. A decoherence time of 500 fs was measured, and clear signatures for strong coupling between the electronic states and phonon modes were observed, allowing coherent coupling between otherwise nonresonant transitions. This provides detailed experimental evidence of the long-lived coherences and the nature of the quantum mechanical interactions between electronic states and phonon modes in phycocyanin-645 from cryptophyte marine algae.
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Affiliation(s)
| | - K E Wilk
- School of Physics and Centre for Applied Medical Research, St. Vincents Hospital, The University of New South Wales , Sydney, New South Wales 2052, Australia
| | - P M G Curmi
- School of Physics and Centre for Applied Medical Research, St. Vincents Hospital, The University of New South Wales , Sydney, New South Wales 2052, Australia
| | - H M Quiney
- School of Physics and ARC Centre of Excellence for Coherent X-Ray Science, The University of Melbourne , Victoria 3010, Australia
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43
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The separation of overlapping transitions in β-carotene with broadband 2D electronic spectroscopy. Chem Phys Lett 2012. [DOI: 10.1016/j.cplett.2011.10.051] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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44
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König C, Neugebauer J. Quantum chemical description of absorption properties and excited-state processes in photosynthetic systems. Chemphyschem 2011; 13:386-425. [PMID: 22287108 DOI: 10.1002/cphc.201100408] [Citation(s) in RCA: 96] [Impact Index Per Article: 6.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2011] [Indexed: 11/07/2022]
Abstract
The theoretical description of the initial steps in photosynthesis has gained increasing importance over the past few years. This is caused by more and more structural data becoming available for light-harvesting complexes and reaction centers which form the basis for atomistic calculations and by the progress made in the development of first-principles methods for excited electronic states of large molecules. In this Review, we discuss the advantages and pitfalls of theoretical methods applicable to photosynthetic pigments. Besides methodological aspects of excited-state electronic-structure methods, studies on chlorophyll-type and carotenoid-like molecules are discussed. We also address the concepts of exciton coupling and excitation-energy transfer (EET) and compare the different theoretical methods for the calculation of EET coupling constants. Applications to photosynthetic light-harvesting complexes and reaction centers based on such models are also analyzed.
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Affiliation(s)
- Carolin König
- Institute for Physical and Theoretical Chemistry, Technical University Braunschweig, Braunschweig, Germany
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45
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Turner DB, Stone KW, Gundogdu K, Nelson KA. Invited article: The coherent optical laser beam recombination technique (COLBERT) spectrometer: coherent multidimensional spectroscopy made easier. THE REVIEW OF SCIENTIFIC INSTRUMENTS 2011; 82:081301. [PMID: 21895226 DOI: 10.1063/1.3624752] [Citation(s) in RCA: 54] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
We have developed an efficient spectrometer capable of performing a wide variety of coherent multidimensional measurements at optical wavelengths. The two major components of the largely automated device are a spatial beam shaper which controls the beam geometry and a spatiotemporal pulse shaper which controls the temporal waveform of the femtosecond pulse in each beam. We describe how to construct, calibrate, and operate the device, and we discuss its limitations. We use the exciton states of a semiconductor nanostructure as a working example. A series of complex multidimensional spectra-displayed in amplitude and real parts-reveals increasingly intricate correlations among the excitons.
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Affiliation(s)
- Daniel B Turner
- Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA
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46
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Yuen-Zhou J, Aspuru-Guzik A. Quantum process tomography of excitonic dimers from two-dimensional electronic spectroscopy. I. General theory and application to homodimers. J Chem Phys 2011; 134:134505. [PMID: 21476762 DOI: 10.1063/1.3569694] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Is it possible to infer the time evolving quantum state of a multichromophoric system from a sequence of two-dimensional electronic spectra (2D-ES) as a function of waiting time? Here we provide a positive answer for a tractable model system: a coupled dimer. After exhaustively enumerating the Liouville pathways associated to each peak in the 2D-ES, we argue that by judiciously combining the information from a series of experiments varying the polarization and frequency components of the pulses, detailed information at the amplitude level about the input and output quantum states at the waiting time can be obtained. This possibility yields a quantum process tomography (QPT) of the single-exciton manifold, which completely characterizes the open quantum system dynamics through the reconstruction of the process matrix. In this manuscript, we present the general theory as well as specific and numerical results for a homodimer, for which we prove that signals stemming from coherence to population transfer and vice versa vanish upon isotropic averaging, therefore, only allowing for a partial QPT in such case. However, this fact simplifies the spectra, and it follows that only two polarization controlled experiments (and no pulse-shaping requirements) suffice to yield the elements of the process matrix, which survive under isotropic averaging. Redundancies in the 2D-ES amplitudes allow for the angle between the two site transition dipole moments to be self-consistently obtained, hence simultaneously yielding structural and dynamical information of the dimer. Model calculations are presented, as well as an error analysis in terms of the angle between the dipoles and peak amplitude extraction. In the second article accompanying this study, we numerically exemplify the theory for heterodimers and carry out a detailed error analysis for such case. This investigation reveals an exciting quantum information processing (QIP) approach to spectroscopic experiments of excitonic systems, and hence, bridges an important gap between theoretical studies on excitation energy transfer from the QIP standpoint and experimental methods to study such systems in the chemical physics community.
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Affiliation(s)
- Joel Yuen-Zhou
- Department of Chemistry and Chemical Biology, Harvard University, Cambridge, Massachusetts 02138, USA
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47
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Marek MS, Buckup T, Motzkus M. Direct Observation of a Dark State in Lycopene Using Pump-DFWM. J Phys Chem B 2011; 115:8328-37. [DOI: 10.1021/jp202753j] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Marie S. Marek
- Physikalisch-Chemisches Institut, Ruprecht-Karls-Universität Heidelberg, D-69120 Heidelberg, Germany
| | - Tiago Buckup
- Physikalisch-Chemisches Institut, Ruprecht-Karls-Universität Heidelberg, D-69120 Heidelberg, Germany
| | - Marcus Motzkus
- Physikalisch-Chemisches Institut, Ruprecht-Karls-Universität Heidelberg, D-69120 Heidelberg, Germany
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48
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Jankowiak R, Reppert M, Zazubovich V, Pieper J, Reinot T. Site Selective and Single Complex Laser-Based Spectroscopies: A Window on Excited State Electronic Structure, Excitation Energy Transfer, and Electron–Phonon Coupling of Selected Photosynthetic Complexes. Chem Rev 2011; 111:4546-98. [DOI: 10.1021/cr100234j] [Citation(s) in RCA: 122] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Ryszard Jankowiak
- Department of Chemistry, Kansas State University, Manhattan, Kansas 66506, United States
| | - Mike Reppert
- Department of Chemistry, Kansas State University, Manhattan, Kansas 66506, United States
| | - Valter Zazubovich
- Department of Physics, Concordia University, Montreal H4B1R6 Quebec, Canada
| | - Jörg Pieper
- Max-Volmer-Laboratories for Biophysical Chemistry, Technical University of Berlin, Germany
- Institute of Physics, University of Tartu, Riia 142, 51014 Tartu, Estonia
| | - Tonu Reinot
- Department of Chemistry, Kansas State University, Manhattan, Kansas 66506, United States
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49
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50
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Nakamura R, Nakagawa K, Nango M, Hashimoto H, Yoshizawa M. Dark Excited States of Carotenoid Regulated by Bacteriochlorophyll in Photosynthetic Light Harvesting. J Phys Chem B 2011; 115:3233-9. [DOI: 10.1021/jp111718k] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Affiliation(s)
- Ryosuke Nakamura
- Department of Physics, Graduate School of Science, Tohoku University, 6-3 Aramaki-Aza-Aoba, Aoba-ku, Sendai 980-8578, Japan
- JST, CREST, 4-1-8 Hon-chou, Kawaguchi, Saitama 332-0012, Japan
| | - Katsunori Nakagawa
- JST, CREST, 4-1-8 Hon-chou, Kawaguchi, Saitama 332-0012, Japan
- Department of Life and Materials Engineering, Graduate School of Engineering, Nagoya Institute of Technology, Gokiso-cho, Showa-ku, Nagoya 466-8555, Japan
| | - Mamoru Nango
- JST, CREST, 4-1-8 Hon-chou, Kawaguchi, Saitama 332-0012, Japan
- Department of Life and Materials Engineering, Graduate School of Engineering, Nagoya Institute of Technology, Gokiso-cho, Showa-ku, Nagoya 466-8555, Japan
- Department of Physics, Graduate School of Science, Osaka City University, 3-3-138 Sugimoto, Sumiyoshi-ku, Osaka 558-8585, Japan
| | - Hideki Hashimoto
- JST, CREST, 4-1-8 Hon-chou, Kawaguchi, Saitama 332-0012, Japan
- Department of Physics, Graduate School of Science, Osaka City University, 3-3-138 Sugimoto, Sumiyoshi-ku, Osaka 558-8585, Japan
| | - Masayuki Yoshizawa
- Department of Physics, Graduate School of Science, Tohoku University, 6-3 Aramaki-Aza-Aoba, Aoba-ku, Sendai 980-8578, Japan
- JST, CREST, 4-1-8 Hon-chou, Kawaguchi, Saitama 332-0012, Japan
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