1
|
Chang R, Gruebele M, Leckband DE. Protein Folding Stability and Kinetics in Alginate Hydrogels. Biomacromolecules 2023; 24:5245-5254. [PMID: 37906737 DOI: 10.1021/acs.biomac.3c00764] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2023]
Abstract
Proteins are commonly encapsulated in alginate gels for drug delivery and tissue-engineering applications. However, there is limited knowledge of how encapsulation impacts intrinsic protein properties such as folding stability or unfolding kinetics. Here, we use fast relaxation imaging (FReI) to image protein unfolding in situ in alginate hydrogels after applying a temperature jump. Based on changes in the Förster resonance energy transfer (FRET) response of FRET-labeled phosphoglycerate kinase (PGK), we report the quantitative impact of multiple alginate hydrogel concentrations on protein stability and folding dynamics. The gels stabilize PGK by increasing its melting temperature up to 18.4 °C, and the stabilization follows a nonmonotonic dependence on the alginate density. In situ kinetic measurements also reveal that PGK deviates more from two-state folding behavior in denser gels and that the gel decreases the unfolding rate and accelerates the folding rate of PGK, compared to buffer. Phi-value analysis suggests that the folding transition state of an encapsulated protein is structurally similar to that of folded protein. This work reveals both beneficial and negative impacts of gel encapsulation on protein folding, as well as potential mechanisms contributing to altered stability.
Collapse
|
2
|
Amsden BG. Hydrogel Mesh Size and Its Impact on Predictions of Mathematical Models of the Solute Diffusion Coefficient. Macromolecules 2022. [DOI: 10.1021/acs.macromol.2c01443] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Brian G. Amsden
- Department of Chemical Engineering, Queen’s University, Kingston, ON, Canada K7L 3N6
| |
Collapse
|
3
|
Balaj RV, Cho SW, Singh P, Zarzar LD. Polyelectrolyte hydrogel capsules as stabilizers for reconfigurable complex emulsions. Polym Chem 2020. [DOI: 10.1039/c9py00956f] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Polyelectrolyte capsules stabilize biphasic oil droplets while preserving droplet reconfigurability in the presence of surfactants.
Collapse
Affiliation(s)
- Rebecca V. Balaj
- Department of Chemistry
- The Pennsylvania State University
- University Park
- USA 16802
| | - Seung Wook Cho
- Department of Materials Science and Engineering
- The Pennsylvania State University
- University Park
- USA 16802
| | - Prachi Singh
- Department of Materials Science and Engineering
- The Pennsylvania State University
- University Park
- USA 16802
| | - Lauren D. Zarzar
- Department of Chemistry
- The Pennsylvania State University
- University Park
- USA 16802
- Department of Materials Science and Engineering
| |
Collapse
|
4
|
Rossi F, Masi M. On the ability of chromatographic mass balance to predict solute diffusivity in drug delivery systems. AIChE J 2019. [DOI: 10.1002/aic.16709] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Filippo Rossi
- Department of Chemistry, Materials and Chemical Engineering “Giulio Natta”Politecnico di Milano Milan Italy
| | - Maurizio Masi
- Department of Chemistry, Materials and Chemical Engineering “Giulio Natta”Politecnico di Milano Milan Italy
| |
Collapse
|
5
|
The elucidation of surrounding alginate gels on the pollutants degradation by entrapped nanoscale zero-valent iron. Colloids Surf B Biointerfaces 2018; 171:233-240. [DOI: 10.1016/j.colsurfb.2018.07.033] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2018] [Revised: 06/24/2018] [Accepted: 07/16/2018] [Indexed: 11/18/2022]
|
6
|
Zhou Y, Li J, Zhang Y, Dong D, Zhang E, Ji F, Qin Z, Yang J, Yao F. Establishment of a Physical Model for Solute Diffusion in Hydrogel: Understanding the Diffusion of Proteins in Poly(sulfobetaine methacrylate) Hydrogel. J Phys Chem B 2017; 121:800-814. [DOI: 10.1021/acs.jpcb.6b10355] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Affiliation(s)
| | - Junjie Li
- Department
of Advanced Interdisciplinary Studies, Institute of Basic Medical
Sciences and Tissue Engineering Research Center, Academy of Military Medical Sciences, Beijing 100850, China
| | | | | | | | | | | | - Jun Yang
- The
Key Laboratory of Bioactive Materials, Ministry of Education, College
of Life Science, Nankai University, Tianjin 300071, China
| | | |
Collapse
|
7
|
Rossi F, Castiglione F, Ferro M, Marchini P, Mauri E, Moioli M, Mele A, Masi M. Drug-Polymer Interactions in Hydrogel-based Drug-Delivery Systems: An Experimental and Theoretical Study. Chemphyschem 2015; 16:2818-2825. [DOI: 10.1002/cphc.201500526] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2015] [Indexed: 12/19/2022]
|
8
|
Chun MS, Lee DY. Water Sorption and Hindered Diffusion with Different Chain Stiffness of Superabsorbent Polymer. B KOREAN CHEM SOC 2015. [DOI: 10.1002/bkcs.10062] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Affiliation(s)
- Myung-Suk Chun
- Complex Fluids Laboratory, National Agenda Research Division; Korea Institute of Science and Technology (KIST); Seoul 136-791 Korea
| | - Dae-Young Lee
- Center for Urban Energy System Research; Korea Institute of Science and Technology (KIST); Seoul 136-791 Korea
| |
Collapse
|
9
|
|
10
|
Hadjiev NA, Amsden BG. An assessment of the ability of the obstruction-scaling model to estimate solute diffusion coefficients in hydrogels. J Control Release 2014; 199:10-6. [PMID: 25499554 DOI: 10.1016/j.jconrel.2014.12.010] [Citation(s) in RCA: 51] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2014] [Revised: 12/04/2014] [Accepted: 12/06/2014] [Indexed: 11/16/2022]
Abstract
The ability to estimate the diffusion coefficient of a solute within hydrogels has important application in the design and analysis of hydrogels used in drug delivery, tissue engineering, and regenerative medicine. A number of mathematical models have been derived for this purpose; however, they often rely on fitted parameters and so have limited predictive capability. Herein we assess the ability of the obstruction-scaling model to provide reasonable estimates of solute diffusion coefficients within hydrogels, as well as the assumption that a hydrogel can be represented as an entangled polymer solution of an equivalent concentration. Fluorescein isothiocyanate dextran solutes were loaded into sodium alginate solutions as well as hydrogels of different polymer volume fractions formed from photoinitiated cross-linking of methacrylate sodium alginate. The tracer diffusion coefficients of these solutes were measured using fluorescence recovery after photobleaching (FRAP). The measured diffusion coefficients were then compared to the values predicted by the obstruction-scaling model. The model predictions were within ±15% of the measured values, suggesting that the model can provide useful estimates of solute diffusion coefficients within hydrogels and solutions. Moreover, solutes diffusing in both sodium alginate solutions and hydrogels were demonstrated to experience the same degree of solute mobility restriction given the same effective polymer concentration, supporting the assumption that a hydrogel can be represented as an entangled polymer solution of equivalent concentration.
Collapse
Affiliation(s)
- Nicholas A Hadjiev
- Department of Chemical Engineering, Queen's University, Kingston, ON K7L 3N6, Canada
| | - Brian G Amsden
- Department of Chemical Engineering, Queen's University, Kingston, ON K7L 3N6, Canada.
| |
Collapse
|
11
|
Araujo V, Gamboa A, Caro N, Abugoch L, Gotteland M, Valenzuela F, Merchant HA, Basit AW, Tapia C. Release of prednisolone and inulin from a new calcium-alginate chitosan-coated matrix system for colonic delivery. J Pharm Sci 2013; 102:2748-59. [PMID: 23839971 DOI: 10.1002/jps.23656] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2013] [Revised: 06/06/2013] [Accepted: 06/11/2013] [Indexed: 11/05/2022]
Abstract
Putative colonic release formulations of calcium (Ca)-alginate coated with chitosan containing two different actives, prednisolone and inulin, were prepared in three different sizes, beads (D50 = 2104 μm) and microparticles (D50 = 354 and 136 μm). The formulations were tested in standard phosphate buffer and biorelevant Krebs bicarbonate buffer at pH 7.4, and were further evaluated in the presence of the bacterium E. coli. Product yield and encapsulation were higher with prednisolone than with inulin. In Krebs bicarbonate buffer, a clear relationship between particle size and prednisolone release was observed. In contrast, release of inulin was independent of the particle size. In phosphate buffer, the particles eroded quickly, whereas in Krebs buffer, the particles swelled slowly. The difference in behavior can be attributed to the formation of calcium phosphate in the phosphate buffer medium, which in turn weakens the Ca-alginate matrix core. In the presence of E. coli, the formulations were fermented and the release of prednisolone was accelerated. In conclusion, the buffer media affects formulation behavior and drug release, with the bicarbonate media providing a better simulation of in vivo behavior. Moreover, the susceptibility of the formulations to bacterial action indicates their suitability as carriers for colonic drug delivery.
Collapse
Affiliation(s)
- Valeria Araujo
- Departamento de Ciencia de los Alimentos y Tecnología Química, Facultad de Ciencias Químicas y Farmacéuticas, Universidad de Chile, Av. Vicuña Mackenna 20, Providencia, Santiago de Chile, Chile
| | | | | | | | | | | | | | | | | |
Collapse
|
12
|
Golmohamadi M, Wilkinson KJ. Diffusion of ions in a calcium alginate hydrogel-structure is the primary factor controlling diffusion. Carbohydr Polym 2013; 94:82-7. [PMID: 23544513 DOI: 10.1016/j.carbpol.2013.01.046] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2012] [Revised: 01/09/2013] [Accepted: 01/18/2013] [Indexed: 12/23/2022]
Abstract
The diffusion of solutes has been evaluated in an alginate hydrogel as a function of its structure. The role of solute and gel charge on the diffusion measurements were of particular interest. Diffusion coefficients were measured using fluorescence correlation spectroscopy as a function of solute charge and size, bulk solution ionic strength and pH, and gel density. Diffusion coefficients of fluorescent dextrans with hydrodynamic radii up to 6 nm were reduced by 30% in a 1.8% (w/w) hydrogel whereas they were reduced by only 2% in a 0.2% (w/w) hydrogel. The role of ionic strength was examined for various concentrations (0.1-100 mM) and compositions of ions (Na(+), Ca(2+) or mixtures thereof). The diffusion coefficient of a small charged probe (rhodamine 6G, R6G(+)) did not change significantly with increasing ionic strength when sodium was used as the counter ion. The diffusion coefficient was only moderately influenced by the charge of solutes (from +1 to -2). Similarly, pH variations from 3 to 9 had little impact on the diffusion coefficients of R6G(+) in the gel. On the other hand, the addition of Ca(2+) had a significant impact on gel compactness, which led to a significant reduction in solute diffusion. For the calcium alginate hydrogels, structural modifications resulting from Ca binding were much more important than electrostatic effects due to modifications of the gel Donnan potential.
Collapse
Affiliation(s)
- Mahmood Golmohamadi
- Department of Chemistry, University of Montreal, P.O. Box 6128, Succursale Centre-ville, Montréal, Québec, Canada H3C 3J7
| | | |
Collapse
|
13
|
Ni T, Huang GS, Gao P, Xu YT, Yang MZ. Molecular Simulation of Salt Ion Effect on Anionic Polyelectrolyte Chain. J MACROMOL SCI B 2011. [DOI: 10.1080/00222348.2011.556998] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Affiliation(s)
- Tao Ni
- a State Key Lab of Polymer Materials and Engineering , College of Polymer Science and Engineering, Sichuan University , Chengdu, China
| | - Guang-Su Huang
- a State Key Lab of Polymer Materials and Engineering , College of Polymer Science and Engineering, Sichuan University , Chengdu, China
| | - Pin Gao
- a State Key Lab of Polymer Materials and Engineering , College of Polymer Science and Engineering, Sichuan University , Chengdu, China
| | - Yun-Tao Xu
- a State Key Lab of Polymer Materials and Engineering , College of Polymer Science and Engineering, Sichuan University , Chengdu, China
| | - Ming-Zhu Yang
- a State Key Lab of Polymer Materials and Engineering , College of Polymer Science and Engineering, Sichuan University , Chengdu, China
| |
Collapse
|
14
|
Waters DJ, Frank CW. Hindered Diffusion of Oligosaccharides in High Strength Poly(ethylene glycol)/Poly(acrylic acid) Interpenetrating Network Hydrogels: Hydrodynamic Versus Obstruction Models. POLYMER 2009; 50:6331-6339. [PMID: 20514136 DOI: 10.1016/j.polymer.2009.05.034] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
Abstract
Diffusion coefficients of small oligosaccharides within high strength poly(ethylene glycol)/poly(acrylic acid) interpenetrating network (PEG/PAA IPN) hydrogels were measured by diffusion through hydrogel slabs. The ability of hindered diffusion models previously presented in the literature to fit the experimental data is examined. A model based solely on effects due to hydrodynamics is compared to a model based solely on solute obstruction. To examine the effect of polymer volume fraction on the observed diffusion coefficients, the equilibrium volume fraction of polymer in PEG/PAA IPNs was systematically varied by changing the initial PEG polymer concentration in hydrogel precursor solutions from 20 to 50 wt./wt.%. To examine the effect of solute radius on the observed diffusion coefficients, solute radii were varied from 3.3 to 5.1 Å by measuring diffusion coefficients of glucose, a monosaccharide; maltose, a disaccharide; and maltotriose, a trisaccharide. Both the hydrodynamic and obstruction models rely on scaling relationships to predict diffusion coefficients. The proper scaling relationship for each of the hindered diffusion models is evaluated based on fits to experimental data. The scaling relationship employed is found to have a greater significance for the hydrodynamic model than the obstruction model. Regardless of the scaling relationship employed, the obstruction model provides a better fit to our experimental data than the hydrodynamic model.
Collapse
Affiliation(s)
- Dale J Waters
- Department of Chemical Engineering, Stanford University, 381 North-South Mall, Stauffer III, Stanford, CA 94305-5025, United States
| | | |
Collapse
|
15
|
Fu Y, Kao WJ. Drug release kinetics and transport mechanisms from semi-interpenetrating networks of gelatin and poly(ethylene glycol) diacrylate. Pharm Res 2009; 26:2115-24. [PMID: 19554430 PMCID: PMC3809113 DOI: 10.1007/s11095-009-9923-1] [Citation(s) in RCA: 43] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2009] [Accepted: 06/03/2009] [Indexed: 10/20/2022]
Abstract
PURPOSE To elucidate the key parameters affecting solute transport from semi-interpenetrating networks (sIPNs) comprised of poly(ethylene glycol) diacrylate (PEGdA) and gelatin that are partially crosslinked, water-swellable and biodegradable. Effects of material compositions, solute size, solubility, and loading density have been investigated. MATERIALS AND METHODS sIPNs of following gelatin/PEGdA weight-to-weight ratios were prepared: 10:15, 10:20, 10:30, 15:15, 20:15. Five model solutes of different physicochemical properties were selected, i.e. silver sulfadiazine (AgSD), bupivacaine hydrochloride (Bup), sulfadiazine sodium (NaSD), keratinocyte growth factor (KGF), and bovine serum albumin conjugated with fluorescein isothiocyanate (BSA-FITC). Release studies were performed and the results were analyzed using three hydrogel based common theories (free volume, hydrodynamic and obstruction). RESULTS The release kinetics of model solutes was influenced by each factor under investigation. Specifically, the initial release rates and intra-gel diffusivity decreased with increasing PEGdA content or increasing solute molecular weight. However, the initial release rate and intra-gel diffusivity increased with increasing gelatin content or increasing solute water solubility, which contradicted with the classical hydrogel based solute transport theories, i.e. increasing polymer volume leads to decreased solute diffusivity within the gel. CONCLUSION This analysis provides structure-functional information of the sIPN as a potential therapeutic delivery matrix.
Collapse
Affiliation(s)
- Yao Fu
- School of Pharmacy, University of Wisconsin-Madison, 777 Highland Ave., Madison, Wisconsin 53705, USA
| | - Weiyuan John Kao
- School of Pharmacy, University of Wisconsin-Madison, 777 Highland Ave., Madison, Wisconsin 53705, USA
- Department of Biomedical Engineering, College of Engineering, University of Wisconsin-Madison, Madison, Wisconsin 53705, USA
| |
Collapse
|
16
|
Le Feunteun S, Mariette F. PFG−NMR Techniques Provide a New Tool for Continuous Investigation of the Evolution of the Casein Gel Microstructure after Renneting. Macromolecules 2008. [DOI: 10.1021/ma702246m] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Steven Le Feunteun
- Cemagref, Food Process Engineering Research Unit, CS 64426, 17 avenue de Cucillé, 35044 Rennes, Cedex, France
| | - François Mariette
- Cemagref, Food Process Engineering Research Unit, CS 64426, 17 avenue de Cucillé, 35044 Rennes, Cedex, France
| |
Collapse
|
17
|
Fatin-Rouge N, Wilkinson KJ, Buffle J. Combining small angle neutron scattering (SANS) and fluorescence correlation spectroscopy (FCS) measurements to relate diffusion in agarose gels to structure. J Phys Chem B 2007; 110:20133-42. [PMID: 17034188 DOI: 10.1021/jp060362e] [Citation(s) in RCA: 45] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Small angle neutron scattering (SANS) and fluorescence correlation spectroscopy (FCS) measurements were carried out on agarose hydrogels to link their microscopic structure to the diffusivity of solutes at different scales. SANS allowed for the determination of the distribution of void volumes within the gels. They were shown to be compatible with a random network of cylindrical fibers as described by the Ogston model. FCS measured solute diffusivity in spaces similar in size to the void volumes, and thus, the results reflected the gel heterogeneity. Solute diffusivity was predicted by modeling the gel as microscopic geometrical cells. Variations in the diffusivity of solutes of different sizes could be predicted from the structural parameters of the gel using theory, taking into account obstruction by cylindrical cells and solute hydrodynamics. Prediction of the FCS autocorrelation functions for solutes from a cell model demonstrated a lack of sensitivity of this technique for multicomponent analysis.
Collapse
Affiliation(s)
- Nicolas Fatin-Rouge
- Analytical and Biophysical Environmental Chemistry, Sciences II, University of Geneva, 30 Quai E. Ansermet, CH-1211 Geneva 4, Switzerland.
| | | | | |
Collapse
|
18
|
Weng L, Liang S, Zhang L, Zhang X, Xu J. Transport of Glucose and Poly(ethylene glycol)s in Agarose Gels Studied by the Refractive Index Method. Macromolecules 2005. [DOI: 10.1021/ma047337w] [Citation(s) in RCA: 33] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
|
19
|
Gu F, Amsden B, Neufeld R. Sustained delivery of vascular endothelial growth factor with alginate beads. J Control Release 2004; 96:463-72. [PMID: 15120902 DOI: 10.1016/j.jconrel.2004.02.021] [Citation(s) in RCA: 168] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2003] [Accepted: 02/26/2004] [Indexed: 10/26/2022]
Abstract
Therapeutic angiogenesis is the growth of blood vessels from a pre-existing vasculature for clinical applications such as treating myocardial and limb ischemia. Vascular endothelial growth factor (VEGF) is a potent signal transduction molecule that acts specifically on vascular endothelial cells. Encapsulation of VEGF in a polymer matrix not only protects protein against enzymatic degradation in the body, but also allows proteins to be released at a controllable rate into a localized area. In this study, VEGF was encapsulated in calcium alginate beads by the extrusion/external gelation method, and was subsequently released in PBS and in serum media. The objective was to optimize VEGF encapsulation yield and obtain VEGF release at a constant rate from alginate matrices in vitro. The incorporation of low concentrations of VEGF and NaCl can increase encapsulation yield to 97%. The rate of VEGF release from alginate beads was higher in serum than in PBS, which was due to the capacity of the serum in reducing the electrostatic interaction between alginate and VEGF. The presence of CaCl(2) in the release supernatant can shield the alginate interaction with VEGF, and a constant release rate of 6 ng/ml/day may be sustained for 14 days. These results suggest that the alginate-VEGF delivery system may be useful in the development of vascular tissue engineering and wound healing applications.
Collapse
Affiliation(s)
- Frank Gu
- Department of Chemical Engineering, Queen's University, Kingston, ON, Canada K7L 3N6
| | | | | |
Collapse
|
20
|
Darwish MIM, van der Maarel JRC, Zitha PLJ. Ionic Transport in Polyelectrolyte Gels: Model and NMR Investigations. Macromolecules 2004. [DOI: 10.1021/ma0302558] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Mohamed I. M. Darwish
- Department of Applied Earth Sciences, Delft University of Technology, Mijnbouwstraat 120, 2628 RX Delft, The Netherlands, and Leiden Institute of Chemistry, Leiden University, Leiden, The Netherlands
| | - Johan R. C. van der Maarel
- Department of Applied Earth Sciences, Delft University of Technology, Mijnbouwstraat 120, 2628 RX Delft, The Netherlands, and Leiden Institute of Chemistry, Leiden University, Leiden, The Netherlands
| | - Pacelli L. J. Zitha
- Department of Applied Earth Sciences, Delft University of Technology, Mijnbouwstraat 120, 2628 RX Delft, The Netherlands, and Leiden Institute of Chemistry, Leiden University, Leiden, The Netherlands
| |
Collapse
|
21
|
Slater GW, Kenward M, McCormick LC, Gauthier MG. The theory of DNA separation by capillary electrophoresis. Curr Opin Biotechnol 2003; 14:58-64. [PMID: 12566003 DOI: 10.1016/s0958-1669(02)00012-5] [Citation(s) in RCA: 41] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
The Human Genome has been sequenced in large part owing to the invention of capillary electrophoresis. Although this technology has matured enough to allow such amazing achievements, the physical mechanisms at play during separation have yet to be completely understood and optimized. Recently, new separation regimes and new physical mechanisms have been investigated. The use of free-flow electrophoresis and new modes of pulsed-field electrophoresis have been suggested, while we have observed a shift towards single nucleotide polymorphism analysis and microchip technologies. A strong theoretical basis remains essential for the efficient development of new methods.
Collapse
Affiliation(s)
- Gary W Slater
- Department of Physics, University of Ottawa, 150 Louis-Pasteur, Ontario, K1N 6N5, Ottawa, Canada.
| | | | | | | |
Collapse
|
22
|
Gauthier MG, Slater GW. Exactly solvable Ogston model of gel electrophoresis. IX. Generalizing the lattice model to treat high field intensities. J Chem Phys 2002. [DOI: 10.1063/1.1505857] [Citation(s) in RCA: 20] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
|
23
|
Amsden B, Grotheer K, Angl D. Influence of Polymer Ionization Degree on Solute Diffusion in Polyelectrolyte Gels. Macromolecules 2002. [DOI: 10.1021/ma011708g] [Citation(s) in RCA: 20] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Brian Amsden
- Department of Chemical Engineering, Queen's University, Kingston, Ontario, Canada K7L 3N6
| | - Kevin Grotheer
- Department of Chemical Engineering, Queen's University, Kingston, Ontario, Canada K7L 3N6
| | - Deepak Angl
- Department of Chemical Engineering, Queen's University, Kingston, Ontario, Canada K7L 3N6
| |
Collapse
|