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Zhang S, Chen Y, Zhu J, Lu Q, Cryle MJ, Zhang Y, Yan F. Structural diversity, biosynthesis, and biological functions of lipopeptides from Streptomyces. Nat Prod Rep 2023; 40:557-594. [PMID: 36484454 DOI: 10.1039/d2np00044j] [Citation(s) in RCA: 13] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
Covering: up to 2022Streptomyces are ubiquitous in terrestrial and marine environments, where they display a fascinating metabolic diversity. As a result, these bacteria are a prolific source of active natural products. One important class of these natural products is the nonribosomal lipopeptides, which have diverse biological activities and play important roles in the lifestyle of Streptomyces. The importance of this class is highlighted by the use of related antibiotics in the clinic, such as daptomycin (tradename Cubicin). By virtue of recent advances spanning chemistry and biology, significant progress has been made in biosynthetic studies on the lipopeptide antibiotics produced by Streptomyces. This review will serve as a comprehensive guide for researchers working in this multidisciplinary field, providing a summary of recent progress regarding the investigation of lipopeptides from Streptomyces. In particular, we highlight the structures, properties, biosynthetic mechanisms, chemical and chemoenzymatic synthesis, and biological functions of lipopeptides. In addition, the application of genome mining techniques to Streptomyces that have led to the discovery of many novel lipopeptides is discussed, further demonstrating the potential of lipopeptides from Streptomyces for future development in modern medicine.
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Affiliation(s)
- Songya Zhang
- CAS Key Laboratory of Quantitative Engineering Biology, Shenzhen Institute of Synthetic Biology, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen 518055, China
| | - Yunliang Chen
- Helmholtz International Lab for Anti-Infectives, Shandong University-Helmholtz Institute of Biotechnology, State Key Laboratory of Microbial Technology, Shandong University, Qingdao, Shandong 266237, China.
- The Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing 1000050, China.
| | - Jing Zhu
- CAS Key Laboratory of Quantitative Engineering Biology, Shenzhen Institute of Synthetic Biology, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen 518055, China
| | - Qiujie Lu
- Helmholtz International Lab for Anti-Infectives, Shandong University-Helmholtz Institute of Biotechnology, State Key Laboratory of Microbial Technology, Shandong University, Qingdao, Shandong 266237, China.
| | - Max J Cryle
- Department of Biochemistry and Molecular Biology, Monash Biomedicine Discovery Institute, Monash University, Clayton, Victoria, 3800 Australia
- EMBL Australia, Monash University, Clayton, Victoria, 3800 Australia
- ARC Centre of Excellence for Innovations in Peptide and Protein Science, Monash University, Clayton, Victoria, 3800 Australia
| | - Youming Zhang
- CAS Key Laboratory of Quantitative Engineering Biology, Shenzhen Institute of Synthetic Biology, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen 518055, China
- Helmholtz International Lab for Anti-Infectives, Shandong University-Helmholtz Institute of Biotechnology, State Key Laboratory of Microbial Technology, Shandong University, Qingdao, Shandong 266237, China.
| | - Fu Yan
- Helmholtz International Lab for Anti-Infectives, Shandong University-Helmholtz Institute of Biotechnology, State Key Laboratory of Microbial Technology, Shandong University, Qingdao, Shandong 266237, China.
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Xue J, Zhang YS, Huan Z, Yang JD, Cheng JP. Catalytic Vilsmeier-Haack Reactions for C1-Deuterated Formylation of Indoles. J Org Chem 2022; 87:15539-15546. [PMID: 36348629 DOI: 10.1021/acs.joc.2c02085] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Abstract
The Vilsmeier-Haack reaction is a powerful tool to introduce formyl groups into electron-rich arenes, but its wide application is significantly restricted by stoichiometric employment of caustic POCl3. Herein, we reported a catalytic version of the Vilsmeier-Haack reaction enabled by a P(III)/P(V)═O cycle. This catalytic reaction provides a facile and efficient route for the direct construction of C1-deuterated indol-3-carboxaldehyde under mild conditions with stoichiometric DMF-d7 as the deuterium source. The products feature a remarkably higher deuteration level (>99%) than previously reported ones and are not contaminated by the likely unselective deuteration at other sites. The present transformation can also be used to transfer other carbonyl groups. Further downstream derivatizations of these deuterated products manifested their potential applications in the synthesis of deuterated bioactive molecules. Mechanistic insight was disclosed from studies of kinetics and intermediates.
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Affiliation(s)
- Jing Xue
- Center of Basic Molecular Science (CBMS), Department of Chemistry, Tsinghua University, Beijing 100084, China
| | - Yu-Shan Zhang
- Center of Basic Molecular Science (CBMS), Department of Chemistry, Tsinghua University, Beijing 100084, China
| | - Zhen Huan
- Center of Basic Molecular Science (CBMS), Department of Chemistry, Tsinghua University, Beijing 100084, China
| | - Jin-Dong Yang
- Center of Basic Molecular Science (CBMS), Department of Chemistry, Tsinghua University, Beijing 100084, China
| | - Jin-Pei Cheng
- Center of Basic Molecular Science (CBMS), Department of Chemistry, Tsinghua University, Beijing 100084, China.,State Key Laboratory of Elemento-Organic Chemistry, College of Chemistry, Nankai University, Tianjin 300071, China.,Haihe Laboratory of Sustainable Chemical Transformations, Keyan West Road, Tianjin 300192, China
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Saito S, Oku N, Igarashi Y. Mycetoindole, an N-acyl dehydrotryptophan with plant growth inhibitory activity from an actinomycete of the genus Actinomycetospora. J Antibiot (Tokyo) 2022; 75:44-47. [PMID: 34522026 DOI: 10.1038/s41429-021-00474-7] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2021] [Revised: 07/30/2021] [Accepted: 08/01/2021] [Indexed: 11/09/2022]
Abstract
A rare actinomycetal strain of the genus Actinomycetospora was found to produce a new tryptophan derivative, designated mycetoindole (1). The structure of 1 was determined to be N-3-methylcrotonoyl (Z)-dehydrotryptophan by NMR and MS analytical methods. Compound 1 reduced the root growth of lettuce Lactuca sativa seedlings at concentrations above 0.1 μM and almost completely inhibited seed germination at 10 μM.
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Affiliation(s)
- Shun Saito
- Biotechnology Research Center and Department of Biotechnology, Toyama Prefectural University, Toyama, Japan
- Department of Biosciences and Informatics, Keio University, Yokohama, Japan
| | - Naoya Oku
- Biotechnology Research Center and Department of Biotechnology, Toyama Prefectural University, Toyama, Japan
| | - Yasuhiro Igarashi
- Biotechnology Research Center and Department of Biotechnology, Toyama Prefectural University, Toyama, Japan.
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Vaz B, Martínez C, Cruz F, Denis JG, de Lera ÁR, Aurrecoechea JM, Álvarez R. Palladium-Catalyzed Aminocyclization-Coupling Cascades: Preparation of Dehydrotryptophan Derivatives and Computational Study. J Org Chem 2021; 86:8766-8785. [PMID: 34125552 PMCID: PMC8929666 DOI: 10.1021/acs.joc.1c00636] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
![]()
Dehydrotryptophan
derivatives have been prepared by palladium-catalyzed
aminocyclization-Heck-type coupling cascades starting from o-alkynylaniline derivatives and methyl α-aminoacrylate.
Aryl, alkyl (primary, secondary, and tertiary), and alkenyl substituents
have been introduced at the indole C-2 position. Further variations
at the indole benzene ring, as well as the C-2-unsubstituted case,
have all been demonstrated. In the case of C-2 aryl substitution,
the preparation of the o-alkynylaniline substrate
by Sonogashira coupling and the subsequent cyclization–coupling
cascade have been performed in a one-pot protocol with a single catalyst.
DFT calculations have revealed significant differences in the reaction
profiles of these reactions relative to those involving methyl acrylate
or methacrylate, and between the reactions of the free anilines and
their corresponding carbamates. Those calculations suggest that the
nature of the alkene and of the acid HX released in the HX/alkene
exchange step that precedes C–C bond formation could be responsible
for the experimentally observed differences in reaction efficiencies.
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Affiliation(s)
- Belén Vaz
- Departamento de Química Orgánica, Facultad de Química (CINBIO) and Instituto de Investigación Biomédica de Vigo (IBIV), Universidade de Vigo, Lagoas-Marcosende, 36310 Vigo, Spain
| | - Claudio Martínez
- Departamento de Química Orgánica, Facultad de Química (CINBIO) and Instituto de Investigación Biomédica de Vigo (IBIV), Universidade de Vigo, Lagoas-Marcosende, 36310 Vigo, Spain
| | - Francisco Cruz
- Departamento de Química Orgánica, Facultad de Química (CINBIO) and Instituto de Investigación Biomédica de Vigo (IBIV), Universidade de Vigo, Lagoas-Marcosende, 36310 Vigo, Spain
| | - J Gabriel Denis
- Departamento de Química Orgánica, Facultad de Química (CINBIO) and Instituto de Investigación Biomédica de Vigo (IBIV), Universidade de Vigo, Lagoas-Marcosende, 36310 Vigo, Spain
| | - Ángel R de Lera
- Departamento de Química Orgánica, Facultad de Química (CINBIO) and Instituto de Investigación Biomédica de Vigo (IBIV), Universidade de Vigo, Lagoas-Marcosende, 36310 Vigo, Spain
| | - José M Aurrecoechea
- Departamento de Química Orgánica e Inorgánica, Facultad de Ciencia y Tecnología, Universidad del País Vasco UPV/EHU, Apartado 644, 48080 Bilbao, Spain
| | - Rosana Álvarez
- Departamento de Química Orgánica, Facultad de Química (CINBIO) and Instituto de Investigación Biomédica de Vigo (IBIV), Universidade de Vigo, Lagoas-Marcosende, 36310 Vigo, Spain
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Chen D, Po KHL, Blasco P, Chen S, Li X. Convergent Synthesis of Calcium-Dependent Antibiotic CDA3a and Analogues with Improved Antibacterial Activity via Late-Stage Serine Ligation. Org Lett 2020; 22:4749-4753. [PMID: 32484680 DOI: 10.1021/acs.orglett.0c01544] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
A convergent synthesis via the late-stage serine ligation of naturally occurring calcium-dependent antibiotic CDA3a and its analogues has been developed, which allowed us to readily synthesize the analogues with the variation on the lipid tail. Some analogues were found to show 100-500-fold higher antimicrobial activity than the natural compound CDA3a against drug resistant bacteria. This study will enhance our understanding of CDA3a and provide valuable antibacterial lead candidates for further development.
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Affiliation(s)
- Delin Chen
- Department of Chemistry, State Key Laboratory of Synthetic Chemistry, The University of Hong Kong, Hong Kong, P. R. China
| | - Kathy Hiu Laam Po
- Department of Infectious Diseases Public Health, Jockey Club College of Veterinary Medicine and Life Sciences, The City University of Hong Kong, Kowloon, Kowloon, Hong Kong, P. R. China
| | - Pilar Blasco
- Department of Chemistry, State Key Laboratory of Synthetic Chemistry, The University of Hong Kong, Hong Kong, P. R. China
| | - Sheng Chen
- Department of Infectious Diseases Public Health, Jockey Club College of Veterinary Medicine and Life Sciences, The City University of Hong Kong, Kowloon, Kowloon, Hong Kong, P. R. China
| | - Xuechen Li
- Department of Chemistry, State Key Laboratory of Synthetic Chemistry, The University of Hong Kong, Hong Kong, P. R. China
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Lutz C, Simon W, Werner‐Simon S, Pahl A, Müller C. Totalsynthese von α‐ und β‐Amanitin. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.201914935] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Christian Lutz
- Heidelberg Pharma Research GmbH Department of Chemistry 68529 Ladenburg Deutschland
| | - Werner Simon
- Heidelberg Pharma Research GmbH Department of Chemistry 68529 Ladenburg Deutschland
| | - Susanne Werner‐Simon
- Heidelberg Pharma Research GmbH Department of Chemistry 68529 Ladenburg Deutschland
| | - Andreas Pahl
- Heidelberg Pharma Research GmbH Department of Chemistry 68529 Ladenburg Deutschland
| | - Christoph Müller
- Heidelberg Pharma Research GmbH Department of Chemistry 68529 Ladenburg Deutschland
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Lutz C, Simon W, Werner‐Simon S, Pahl A, Müller C. Total Synthesis of α‐ and β‐Amanitin. Angew Chem Int Ed Engl 2020; 59:11390-11393. [DOI: 10.1002/anie.201914935] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2019] [Revised: 02/12/2020] [Indexed: 12/11/2022]
Affiliation(s)
- Christian Lutz
- Heidelberg Pharma Research GmbH Department of Chemistry 68529 Ladenburg Germany
| | - Werner Simon
- Heidelberg Pharma Research GmbH Department of Chemistry 68529 Ladenburg Germany
| | | | - Andreas Pahl
- Heidelberg Pharma Research GmbH Department of Chemistry 68529 Ladenburg Germany
| | - Christoph Müller
- Heidelberg Pharma Research GmbH Department of Chemistry 68529 Ladenburg Germany
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Winnicka E, Kańska M. Enzymatic synthesis of methyl derivatives of L -tryptophan selectively labeled with hydrogen isotopes. Appl Radiat Isot 2018; 137:118-122. [DOI: 10.1016/j.apradiso.2018.03.019] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2017] [Revised: 01/26/2018] [Accepted: 03/24/2018] [Indexed: 11/15/2022]
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Pająk M, Pałka K, Winnicka E, Kańska M. The chemo- enzymatic synthesis of labeled l-amino acids and some of their derivatives. J Radioanal Nucl Chem 2018; 317:643-666. [PMID: 30100649 PMCID: PMC6061101 DOI: 10.1007/s10967-018-5932-z] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2018] [Indexed: 01/14/2023]
Abstract
This review compiles the combined chemical and enzymatic synthesis of aromatic l-amino acids (l-phenylalanine, l-tyrosine, l-DOPA, l-tryptophan, and their derivatives and precursors) specifically labeled with carbon and hydrogen isotopes, which were elaborated in our research group by the past 20 years. These compounds could be then employed to characterize the mechanisms of enzymatic reactions via kinetic and solvent isotope effects methods.
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Affiliation(s)
- Małgorzata Pająk
- Department of Chemistry, Warsaw University, Pasteur 1 Str., 02-093 Warsaw, Poland
| | - Katarzyna Pałka
- Department of Chemistry, Warsaw University, Pasteur 1 Str., 02-093 Warsaw, Poland
| | - Elżbieta Winnicka
- Department of Chemistry, Warsaw University, Pasteur 1 Str., 02-093 Warsaw, Poland
| | - Marianna Kańska
- Department of Biochemistry, 2nd Faculty of Medicine, Medical University of Warsaw, 61 Zwirki i Wigury Av., 02-091 Warsaw, Poland
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Pająk M, Pałka K, Winnicka E, Kańska M. Syntheses of halogen derivatives of L-tryptophan, L-tyrosine and L-phenylalanine labeled with hydrogen isotopes. J Labelled Comp Radiopharm 2015; 59:4-8. [PMID: 26586485 DOI: 10.1002/jlcr.3357] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2015] [Accepted: 10/22/2015] [Indexed: 11/08/2022]
Abstract
Halogenated, labeled with tritium and doubly with deuterium and tritium, derivatives of L-tryptophan, i.e. 5'-bromo-[2-(3)H]-, 5'-bromo-[2-(2)H/(3)H]-, 5'-fluoro-[2-(3)H]-5'-fluoro-[2-(2)H/(3)H]-, 6'-fluoro-[2-(3)H]-, 6'-fluoro-[2-(2)H/(3)H]-L-tryptophan, as well as, L-tyrosine, i.e. 3'-fluoro-[2-(3)H]-, 3'-fluoro-[2-(2)H/(3)H]-, 3'-chloro-[2-(3)H]-, and 3'-chloro-[2-(2)H/(3)H]-L-tyrosine, and also L-phenylalanine, i.e. 2'-fluoro-[(3S)-(3)H]-, 2'-fluoro-[(3S)-(2)H/(3) H]-, 2'-chloro-[(3S)-(3)H]-, 2'-chloro-[(3S)-(2)H/(3)H]-, 4'-chloro-[(3S)-(3)H]-, and 4'-chloro-[(3S)-(2)H/(3)H]-L-phenylalanine were synthesized using enzymatic methods. Isotopomers of L-tryptophan were synthesized by coupling of halogenated indoles with S-methyl-L-cysteine carried out in deuteriated or tritiated incubation media. Labeled halogenated derivatives of L-tyrosine were obtained by the enzymatically supported exchange between halogenated L-tyrosine and isotopic water. Labeled halogenated isotopologues of L-Phe were synthesized by the enzymatic addition of ammonia to halogenated cinnamic acid. As a source of hydrogen tritiated water (HTO) and heavy water (D2O) with addition of HTO were used.
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Affiliation(s)
- Małgorzata Pająk
- Department of Chemistry, University of Warsaw, 1 Pasteur Str., 02-093, Warsaw, Poland
| | - Katarzyna Pałka
- Department of Chemistry, University of Warsaw, 1 Pasteur Str., 02-093, Warsaw, Poland
| | - Elżbieta Winnicka
- Department of Chemistry, University of Warsaw, 1 Pasteur Str., 02-093, Warsaw, Poland
| | - Marianna Kańska
- Department of Biochemistry, 2nd Faculty of Medicine, Medical University of Warsaw, 61 Żwirki i Wigury Str., 02-091, Warsaw, Poland
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Jiang J, Ma Z, Castle SL. Bulky α,β-dehydroamino acids: their occurrence in nature, synthesis, and applications. Tetrahedron 2015. [DOI: 10.1016/j.tet.2015.06.001] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
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Thirlway J, Lewis R, Nunns L, Al Nakeeb M, Styles M, Struck AW, Smith CP, Micklefield J. Introduction of a Non-Natural Amino Acid into a Nonribosomal Peptide Antibiotic by Modification of Adenylation Domain Specificity. Angew Chem Int Ed Engl 2012; 51:7181-4. [DOI: 10.1002/anie.201202043] [Citation(s) in RCA: 87] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2012] [Revised: 05/18/2012] [Indexed: 01/22/2023]
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Thirlway J, Lewis R, Nunns L, Al Nakeeb M, Styles M, Struck AW, Smith CP, Micklefield J. Introduction of a Non-Natural Amino Acid into a Nonribosomal Peptide Antibiotic by Modification of Adenylation Domain Specificity. Angew Chem Int Ed Engl 2012. [DOI: 10.1002/ange.201202043] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
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Miyanoiri Y, Takeda M, Jee J, Ono AM, Okuma K, Terauchi T, Kainosho M. Alternative SAIL-Trp for robust aromatic signal assignment and determination of the χ(2) conformation by intra-residue NOEs. JOURNAL OF BIOMOLECULAR NMR 2011; 51:425-35. [PMID: 21947837 DOI: 10.1007/s10858-011-9568-3] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/21/2011] [Accepted: 09/05/2011] [Indexed: 05/20/2023]
Abstract
Tryptophan (Trp) residues are frequently found in the hydrophobic cores of proteins, and therefore, their side-chain conformations, especially the precise locations of the bulky indole rings, are critical for determining structures by NMR. However, when analyzing [U-(13)C,(15)N]-proteins, the observation and assignment of the ring signals are often hampered by excessive overlaps and tight spin couplings. These difficulties have been greatly alleviated by using stereo-array isotope labeled (SAIL) proteins, which are composed of isotope-labeled amino acids optimized for unambiguous side-chain NMR assignment, exclusively through the (13)C-(13)C and (13)C-(1)H spin coupling networks (Kainosho et al. in Nature 440:52-57, 2006). In this paper, we propose an alternative type of SAIL-Trp with the [ζ2,ζ3-(2)H(2); δ1,ε3,η2-(13)C(3); ε1-(15)N]-indole ring ([(12)C (γ,) ( 12) C(ε2)] SAIL-Trp), which provides a more robust way to correlate the (1)H(β), (1)H(α), and (1)H(N) to the (1)H(δ1) and (1)H(ε3) through the intra-residue NOEs. The assignment of the (1)H(δ1)/(13)C(δ1) and (1)H(ε3)/(13)C(ε3) signals can thus be transferred to the (1)H(ε1)/(15)N(ε1) and (1)H(η2)/(13)C(η2) signals, as with the previous type of SAIL-Trp, which has an extra (13)C at the C(γ) of the ring. By taking advantage of the stereospecific deuteration of one of the prochiral β-methylene protons, which was (1)H(β2) in this experiment, one can determine the side-chain conformation of the Trp residue including the χ(2) angle, which is especially important for Trp residues, as they can adopt three preferred conformations. We demonstrated the usefulness of [(12)C(γ),(12)C(ε2)] SAIL-Trp for the 12 kDa DNA binding domain of mouse c-Myb protein (Myb-R2R3), which contains six Trp residues.
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Affiliation(s)
- Yohei Miyanoiri
- Graduate School of Science, Structural Biology Research Center, Nagoya University, Furo-cho, Chikusa-ku, Japan
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Lewis RA, Nunns L, Thirlway J, Carroll K, Smith CP, Micklefield J. Active site modification of the β-ketoacyl-ACP synthase FabF3 of Streptomyces coelicolor affects the fatty acid chain length of the CDA lipopeptides. Chem Commun (Camb) 2011; 47:1860-2. [PMID: 21135931 DOI: 10.1039/c0cc03444d] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2023]
Abstract
Using site directed mutagenesis we altered an active site residue (Phe107) of the enzyme encoded by fabF3 (SCO3248) in the Streptomyces coelicolor gene cluster required for biosynthesis of the calcium dependent antibiotics (CDAs), successfully generating two novel CDA derivatives comprising truncated (C4) lipid side chains and confirming that fabF3 encodes a KAS-II homologue that is involved in determining CDA fatty acid chain length.
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Kaur H, Heapy AM, Brimble MA. The synthesis of dehydrotryptophan and dehydrotryptophan-containing peptides. Org Biomol Chem 2011; 9:5897-907. [DOI: 10.1039/c1ob05777d] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
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Zheng J, Zhu H, Hong K, Wang Y, Liu P, Wang X, Peng X, Zhu W. Novel Cyclic Hexapeptides from Marine-Derived Fungus, Aspergillus sclerotiorum PT06-1. Org Lett 2009; 11:5262-5. [DOI: 10.1021/ol902197z] [Citation(s) in RCA: 84] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Jinkai Zheng
- Key Laboratory of Marine Drugs, Chinese Ministry of Education, School of Medicine and Pharmacy, Ocean University of China, Qingdao 266003, People’s Republic of China, State Key Laboratory of Phytochemistry and Plant Resources, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650204, People’s Republic of China, and Institute of Tropical Biological Sciences and Biotechnology, Chinese Academy of Tropical Agricultural Science, Haikou 571101, People’s Republic of China
| | - Huajie Zhu
- Key Laboratory of Marine Drugs, Chinese Ministry of Education, School of Medicine and Pharmacy, Ocean University of China, Qingdao 266003, People’s Republic of China, State Key Laboratory of Phytochemistry and Plant Resources, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650204, People’s Republic of China, and Institute of Tropical Biological Sciences and Biotechnology, Chinese Academy of Tropical Agricultural Science, Haikou 571101, People’s Republic of China
| | - Kui Hong
- Key Laboratory of Marine Drugs, Chinese Ministry of Education, School of Medicine and Pharmacy, Ocean University of China, Qingdao 266003, People’s Republic of China, State Key Laboratory of Phytochemistry and Plant Resources, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650204, People’s Republic of China, and Institute of Tropical Biological Sciences and Biotechnology, Chinese Academy of Tropical Agricultural Science, Haikou 571101, People’s Republic of China
| | - Yi Wang
- Key Laboratory of Marine Drugs, Chinese Ministry of Education, School of Medicine and Pharmacy, Ocean University of China, Qingdao 266003, People’s Republic of China, State Key Laboratory of Phytochemistry and Plant Resources, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650204, People’s Republic of China, and Institute of Tropical Biological Sciences and Biotechnology, Chinese Academy of Tropical Agricultural Science, Haikou 571101, People’s Republic of China
| | - Peipei Liu
- Key Laboratory of Marine Drugs, Chinese Ministry of Education, School of Medicine and Pharmacy, Ocean University of China, Qingdao 266003, People’s Republic of China, State Key Laboratory of Phytochemistry and Plant Resources, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650204, People’s Republic of China, and Institute of Tropical Biological Sciences and Biotechnology, Chinese Academy of Tropical Agricultural Science, Haikou 571101, People’s Republic of China
| | - Xin Wang
- Key Laboratory of Marine Drugs, Chinese Ministry of Education, School of Medicine and Pharmacy, Ocean University of China, Qingdao 266003, People’s Republic of China, State Key Laboratory of Phytochemistry and Plant Resources, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650204, People’s Republic of China, and Institute of Tropical Biological Sciences and Biotechnology, Chinese Academy of Tropical Agricultural Science, Haikou 571101, People’s Republic of China
| | - Xiaoping Peng
- Key Laboratory of Marine Drugs, Chinese Ministry of Education, School of Medicine and Pharmacy, Ocean University of China, Qingdao 266003, People’s Republic of China, State Key Laboratory of Phytochemistry and Plant Resources, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650204, People’s Republic of China, and Institute of Tropical Biological Sciences and Biotechnology, Chinese Academy of Tropical Agricultural Science, Haikou 571101, People’s Republic of China
| | - Weiming Zhu
- Key Laboratory of Marine Drugs, Chinese Ministry of Education, School of Medicine and Pharmacy, Ocean University of China, Qingdao 266003, People’s Republic of China, State Key Laboratory of Phytochemistry and Plant Resources, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650204, People’s Republic of China, and Institute of Tropical Biological Sciences and Biotechnology, Chinese Academy of Tropical Agricultural Science, Haikou 571101, People’s Republic of China
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Siddiquee T, Islam S, Bennett D, Zeller M, Hossain M. Ethyl 1-acetyl-1H-indole-3-carboxyl-ate. Acta Crystallogr Sect E Struct Rep Online 2009; 65:o1802-3. [PMID: 21583507 PMCID: PMC2977149 DOI: 10.1107/s1600536809025379] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2009] [Accepted: 07/01/2009] [Indexed: 11/10/2022]
Abstract
The title compound, C13H13NO3, was synthesized by acetylation of ethyl 1H-indole-3-carboxylate. The aromatic ring system of the molecule is essentially planar, but the saturated ethyl group is also located within this plane and the overall r.m.s. deviation from planarity is only 0.034 Å. Pairs of C—H⋯O interactions connect molecules into chains along the diagonal of the unit cell. Molecules also form weakly connected dimers via π⋯π stacking interactions of the indole rings with centroid–centroid separations of 3.571 (1) Å. C—H⋯π interactions between methylene and methyl groups and the indole and benzene ring complete the directional intermolecular interactions found in the crystal structure.
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Abstract
Acidic lipopeptide antibiotics are a new class of potent antibiotics, which includes daptomycin, A54145, calcium-dependent antibiotics (CDAs), friulimicins/amphomycins, laspartomycin/glycinocins and others. The importance of this novel class is exemplified by the success story of the clinically approved daptomycin, which is used for the treatment of skin infections and bacteremia caused by multidrug-resistant bacteria, including methicillin-resistant Staphylococcus aureus and vancomycin-resistant enterococci. The potency of acidic lipopeptides is inherent in their chemical structure. The nonribosomally synthesized peptide cores consist of eleven to 13 amino acids, which are rigidified by the formation of a ten-membered ring. An N-terminal fatty acid, which facilitates insertion into the lipid bilayer of bacterial membranes, completes the structure. All these antibiotics contain multiple nonproteinogenic amino acids as well as different lipid tails; this yields remarkable structural diversity. This review summarizes the observed structural variety through a detailed description of the composition of the acidic lipopeptides. Furthermore, engineering approaches towards novel lipopeptides are presented. Recent discoveries in the field of tailoring enzymes, which enable structural plurality mainly by amino and fatty acid precursor biosynthesis, are highlighted.
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Affiliation(s)
- Matthias Strieker
- Chemistry and Biochemistry Department, Philipps-University Marburg, Hans-Meerwein-Strasse, Marburg, Germany
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Micklefield J. Biosynthesis and biosynthetic engineering of calcium-dependent lipopeptide antibiotics. PURE APPL CHEM 2009. [DOI: 10.1351/pac-con-08-08-29] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Biosynthetic engineering involves the reprogramming of genes that are involved in the biosynthesis of natural products to generate new "non-natural" products, which might otherwise not exist in nature. Potentially this approach can be used to provide large numbers of secondary metabolites variants, with altered biological activities, many of which are too complex for effective total synthesis. Recently we have been investigating the biosynthesis of the calcium-dependent antibiotics (CDAs) which are members of the therapeutically relevant class of acidic lipopeptide antibiotics. CDAs are assembled by nonribosomal peptide synthetase (NRPS) enzymes. These large modular assembly-line enzymes process intermediates that are covalently tethered to peptidyl carrier protein (PCP) domain bonds bonds, which makes them particularly amenable to reprogramming. The CDA producer, Streptomyces coelicolor, is also a genetically tractable model organism which makes CDA an ideal template for biosynthetic engineering. To this end we have elucidated many of the key steps in CDA biosynthesis and utilized this information to develop methods that have enabled the engineered biosynthesis of wide range of CDA-type lipopeptides.
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Affiliation(s)
- Jason Micklefield
- 1School of Chemistry and Manchester Interdisciplinary Biocentre, The University of Manchester, 131 Princess Street, Manchester M1 7DN, UK
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Wilkinson B, Micklefield J. Chapter 14. Biosynthesis of nonribosomal peptide precursors. Methods Enzymol 2009; 458:353-78. [PMID: 19374990 DOI: 10.1016/s0076-6879(09)04814-9] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Abstract
Nonribosomal peptides are natural products typically of bacterial and fungal origin. These highly complex molecules display a broad spectrum of biological activities, and have been exploited for the development of immunosuppressant, antibiotic, anticancer, and other therapeutic agents. The nonribosomal peptides are assembled by nonribosomal peptide synthetase (NRPS) enzymes comprising repeating modules that are responsible for the sequential selection, activation, and condensation of precursor amino acids. In addition to this, fatty acids, alpha-keto acids and alpha-hydroxy acids, as well as polyketide derived units, can also be utilized by NRPS assembly lines. Final tailoring-steps, including glycosylation and prenylation, serve to further decorate the nonribosomal peptides produced. The wide range of experimental methods that are employed in the elucidation of nonribosomal peptide precursor biosynthesis will be discussed, with particularly emphasis on genomics based approaches which have become wide spread over the last 5 years.
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Affiliation(s)
- Barrie Wilkinson
- Biotica, Chesterford Research Park, Little Chesterford, Essex, United Kingdom
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Amir-Heidari B, Thirlway J, Micklefield J. Auxotrophic-precursor directed biosynthesis of nonribosomal lipopeptides with modified tryptophan residues. Org Biomol Chem 2008; 6:975-8. [DOI: 10.1039/b718766c] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Amir-Heidari B, Micklefield J. NMR Confirmation That Tryptophan Dehydrogenation Occurs with Syn Stereochemistry during the Biosynthesis of CDA in Streptomyces coelicolor. J Org Chem 2007; 72:8950-3. [DOI: 10.1021/jo701660v] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Bagher Amir-Heidari
- School of Chemistry and Manchester Interdisciplinary Biocentre, The University of Manchester, 131 Princess Street, Manchester M1 7DN, UK
| | - Jason Micklefield
- School of Chemistry and Manchester Interdisciplinary Biocentre, The University of Manchester, 131 Princess Street, Manchester M1 7DN, UK
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Powell A, Al Nakeeb M, Wilkinson B, Micklefield J. Precursor-directed biosynthesis of nonribosomal lipopeptides with modified glutamate residues. Chem Commun (Camb) 2007:2683-5. [PMID: 17594019 DOI: 10.1039/b706224a] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Precursor-directed biosynthesis of calcium dependent antibiotics (CDAs) with modified 3-trifluoromethyl and 3-ethyl glutamate residues was achieved by feeding synthetic glutamate analogues to a mutant strain of Streptomyces coelicolor impaired in the biosynthesis of the natural precursor (2S,3R)-3-methyl glutamic acid.
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Affiliation(s)
- Amanda Powell
- School of Chemistry and Manchester Interdisciplinary Biocentre, The University of Manchester, 131 Princess Street, Manchester, UKM1 7ND
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