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Anish AS, De Baets B, Rao S. Metapopulation models with anti-symmetric Lotka-Volterra systems. JOURNAL OF BIOLOGICAL DYNAMICS 2024; 18:2397404. [PMID: 39238442 DOI: 10.1080/17513758.2024.2397404] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/03/2024] [Accepted: 08/15/2024] [Indexed: 09/07/2024]
Abstract
We consider different anti-symmetric Lotka-Volterra systems governing the pairwise interactions among the same n species inhabiting m spatially discrete habitat patches, with each patch having infinitely many equilibria. In the absence of inter-patch species migration, the species densities in each isolated patch evolve in periodic orbits. A central idea of this work is to design a control action to make the trajectories of the system asymptotically converge to a desired coexistence equilibrium among the infinitely many equilibrium points. We propose a scheme to simultaneously control different anti-symmetric Lotka-Volterra systems in multiple habitat patches by designing a metapopulation model. By introducing a suitable inter-patch migration of species, we prove that the trajectories of the resulting metapopulation model are effectively asymptotically converging to the desired coexistence equilibrium. The stability of the coexistence equilibrium is proved using Lyapunov methods coupled with LaSalle's invariance principle.
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Affiliation(s)
- Anju Susan Anish
- KERMIT, Department of Data Analysis and Mathematical Modelling, Ghent University, Gent, Belgium
- Centre for Biosystems and Biotech Data Science, Ghent University Global Campus, Incheon, South Korea
| | - Bernard De Baets
- KERMIT, Department of Data Analysis and Mathematical Modelling, Ghent University, Gent, Belgium
| | - Shodhan Rao
- KERMIT, Department of Data Analysis and Mathematical Modelling, Ghent University, Gent, Belgium
- Centre for Biosystems and Biotech Data Science, Ghent University Global Campus, Incheon, South Korea
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2
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Nakerst G, Denisov S, Haque M. Random sparse generators of Markovian evolution and their spectral properties. Phys Rev E 2023; 108:014102. [PMID: 37583175 DOI: 10.1103/physreve.108.014102] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2023] [Accepted: 06/07/2023] [Indexed: 08/17/2023]
Abstract
The evolution of a complex multistate system is often interpreted as a continuous-time Markovian process. To model the relaxation dynamics of such systems, we introduce an ensemble of random sparse matrices which can be used as generators of Markovian evolution. The sparsity is controlled by a parameter φ, which is the number of nonzero elements per row and column in the generator matrix. Thus, a member of the ensemble is characterized by the Laplacian of a directed regular graph with D vertices (number of system states) and 2φD edges with randomly distributed weights. We study the effects of sparsity on the spectrum of the generator. Sparsity is shown to close the large spectral gap that is characteristic of nonsparse random generators. We show that the first moment of the eigenvalue distribution scales as ∼φ, while its variance is ∼sqrt[φ]. By using extreme value theory, we demonstrate how the shape of the spectral edges is determined by the tails of the corresponding weight distributions and clarify the behavior of the spectral gap as a function of D. Finally, we analyze complex spacing ratio statistics of ultrasparse generators, φ=const, and find that starting already at φ⩾2, spectra of the generators exhibit universal properties typical of Ginibre's orthogonal ensemble.
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Affiliation(s)
- Goran Nakerst
- Institut für Theoretische Physik, Technische Universität Dresden, D-01062 Dresden, Germany
| | - Sergey Denisov
- NordSTAR - Nordic Center for Sustainable and Trustworthy AI Research, Pilestredet 52, N-0166, Oslo, Norway
- Department of Computer Science, Oslo Metropolitan University, N-0130 Oslo, Norway
| | - Masudul Haque
- Institut für Theoretische Physik, Technische Universität Dresden, D-01062 Dresden, Germany
- Max-Planck-Institut für Physik Komplexer Systeme, D-01187 Dresden, Germany
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3
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Knebel J, Geiger PM, Frey E. Topological Phase Transition in Coupled Rock-Paper-Scissors Cycles. PHYSICAL REVIEW LETTERS 2020; 125:258301. [PMID: 33416395 DOI: 10.1103/physrevlett.125.258301] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/07/2020] [Revised: 10/19/2020] [Accepted: 11/05/2020] [Indexed: 06/12/2023]
Abstract
A hallmark of topological phases is the occurrence of topologically protected modes at the system's boundary. Here, we find topological phases in the antisymmetric Lotka-Volterra equation (ALVE). The ALVE is a nonlinear dynamical system and describes, for example, the evolutionary dynamics of a rock-paper-scissors cycle. On a one-dimensional chain of rock-paper-scissor cycles, topological phases become manifest as robust polarization states. At the transition point between left and right polarization, solitary waves are observed. This topological phase transition lies in symmetry class D within the "tenfold way" classification as also realized by 1D topological superconductors.
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Affiliation(s)
- Johannes Knebel
- Arnold-Sommerfeld-Center for Theoretical Physics and Center for NanoScience, Department of Physics, Ludwig-Maximilians-Universität München, Theresienstrasse 37, D-80333 Munich, Germany
| | - Philipp M Geiger
- Arnold-Sommerfeld-Center for Theoretical Physics and Center for NanoScience, Department of Physics, Ludwig-Maximilians-Universität München, Theresienstrasse 37, D-80333 Munich, Germany
| | - Erwin Frey
- Arnold-Sommerfeld-Center for Theoretical Physics and Center for NanoScience, Department of Physics, Ludwig-Maximilians-Universität München, Theresienstrasse 37, D-80333 Munich, Germany
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4
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Denisov S, Vershinina O, Thingna J, Hänggi P, Ivanchenko M. Quasi-stationary states of game-driven systems: A dynamical approach. CHAOS (WOODBURY, N.Y.) 2020; 30:123145. [PMID: 33380033 DOI: 10.1063/5.0019736] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/25/2020] [Accepted: 12/02/2020] [Indexed: 06/12/2023]
Abstract
Evolutionary game theory is a framework to formalize the evolution of collectives ("populations") of competing agents that are playing a game and, after every round, update their strategies to maximize individual payoffs. There are two complementary approaches to modeling evolution of player populations. The first addresses essentially finite populations by implementing the apparatus of Markov chains. The second assumes that the populations are infinite and operates with a system of mean-field deterministic differential equations. By using a model of two antagonistic populations, which are playing a game with stationary or periodically varying payoffs, we demonstrate that it exhibits metastable dynamics that is reducible neither to an immediate transition to a fixation (extinction of all but one strategy in a finite-size population) nor to the mean-field picture. In the case of stationary payoffs, this dynamics can be captured with a system of stochastic differential equations and interpreted as a stochastic Hopf bifurcation. In the case of varying payoffs, the metastable dynamics is much more complex than the dynamics of the means.
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Affiliation(s)
- Sergey Denisov
- Department of Computer Science, Oslo Metropolitan University, N-0130 Oslo, Norway
| | - Olga Vershinina
- Department of Applied Mathematics, Lobachevsky University, 603950 Nizhny Novgorod, Russia
| | - Juzar Thingna
- Center for Theoretical Physics of Complex Systems (IBS), Daejeon 34126, South Korea
| | - Peter Hänggi
- Institut für Physik, Universität Augsburg, D-86135 Augsburg, Germany
| | - Mikhail Ivanchenko
- Department of Applied Mathematics, Lobachevsky University, 603950 Nizhny Novgorod, Russia
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5
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Walker BT, Rodrigues JD, Dhar HS, Oulton RF, Mintert F, Nyman RA. Non-stationary statistics and formation jitter in transient photon condensation. Nat Commun 2020; 11:1390. [PMID: 32170081 PMCID: PMC7070038 DOI: 10.1038/s41467-020-15154-7] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2019] [Accepted: 02/17/2020] [Indexed: 11/26/2022] Open
Abstract
While equilibrium phase transitions are easily described by order parameters and free-energy landscapes, for their non-stationary counterparts these quantities are usually ill-defined. Here, we probe transient non-equilibrium dynamics of an optically pumped, dye-filled microcavity. We quench the system to a far-from-equilibrium state and find delayed condensation close to a critical excitation energy, a transient equivalent of critical slowing down. Besides number fluctuations near the critical excitation energy, we show that transient phase transitions exhibit timing jitter in the condensate formation. This jitter is a manifestation of the randomness associated with spontaneous emission, showing that condensation is a stochastic, rather than deterministic process. Despite the non-equilibrium character of this phase transition, we construct an effective free-energy landscape that describes the formation jitter and allows, in principle, its generalization to a wider class of processes. Description of non-equilibrium phase transitions is problematic, due to the absence of suitable free energy landscapes. Here, the authors experimentally show delayed photon condensation and timing jitter in a dye-filled microcavity, modelled by a non-equilibrium extension of the free-energy landscape.
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Affiliation(s)
- Benjamin T Walker
- Physics Department, Blackett Laboratory, Imperial College London, Prince Consort Road, London, SW7 2AZ, UK.,Centre for Doctoral Training in Controlled Quantum Dynamics, Imperial College London, Prince Consort Road, London, SW7 2AZ, UK
| | - João D Rodrigues
- Physics Department, Blackett Laboratory, Imperial College London, Prince Consort Road, London, SW7 2AZ, UK.
| | - Himadri S Dhar
- Physics Department, Blackett Laboratory, Imperial College London, Prince Consort Road, London, SW7 2AZ, UK
| | - Rupert F Oulton
- Physics Department, Blackett Laboratory, Imperial College London, Prince Consort Road, London, SW7 2AZ, UK
| | - Florian Mintert
- Physics Department, Blackett Laboratory, Imperial College London, Prince Consort Road, London, SW7 2AZ, UK
| | - Robert A Nyman
- Physics Department, Blackett Laboratory, Imperial College London, Prince Consort Road, London, SW7 2AZ, UK
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6
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Cremer J, Melbinger A, Wienand K, Henriquez T, Jung H, Frey E. Cooperation in Microbial Populations: Theory and Experimental Model Systems. J Mol Biol 2019; 431:4599-4644. [PMID: 31634468 DOI: 10.1016/j.jmb.2019.09.023] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2019] [Revised: 09/25/2019] [Accepted: 09/26/2019] [Indexed: 01/07/2023]
Abstract
Cooperative behavior, the costly provision of benefits to others, is common across all domains of life. This review article discusses cooperative behavior in the microbial world, mediated by the exchange of extracellular products called public goods. We focus on model species for which the production of a public good and the related growth disadvantage for the producing cells are well described. To unveil the biological and ecological factors promoting the emergence and stability of cooperative traits we take an interdisciplinary perspective and review insights gained from both mathematical models and well-controlled experimental model systems. Ecologically, we include crucial aspects of the microbial life cycle into our analysis and particularly consider population structures where ensembles of local communities (subpopulations) continuously emerge, grow, and disappear again. Biologically, we explicitly consider the synthesis and regulation of public good production. The discussion of the theoretical approaches includes general evolutionary concepts, population dynamics, and evolutionary game theory. As a specific but generic biological example, we consider populations of Pseudomonas putida and its regulation and use of pyoverdines, iron scavenging molecules, as public goods. The review closes with an overview on cooperation in spatially extended systems and also provides a critical assessment of the insights gained from the experimental and theoretical studies discussed. Current challenges and important new research opportunities are discussed, including the biochemical regulation of public goods, more realistic ecological scenarios resembling native environments, cell-to-cell signaling, and multispecies communities.
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Affiliation(s)
- J Cremer
- Department of Molecular Immunology and Microbiology, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, 9747 AG Groningen, the Netherlands
| | - A Melbinger
- Arnold-Sommerfeld-Center for Theoretical Physics and Center for Nanoscience, Ludwig-Maximilians-Universität München, Theresienstrasse 37, D-80333 Munich, Germany
| | - K Wienand
- Arnold-Sommerfeld-Center for Theoretical Physics and Center for Nanoscience, Ludwig-Maximilians-Universität München, Theresienstrasse 37, D-80333 Munich, Germany
| | - T Henriquez
- Microbiology, Department of Biology I, Ludwig-Maximilians-Universität München, Grosshaderner Strasse 2-4, Martinsried, Germany
| | - H Jung
- Microbiology, Department of Biology I, Ludwig-Maximilians-Universität München, Grosshaderner Strasse 2-4, Martinsried, Germany.
| | - E Frey
- Arnold-Sommerfeld-Center for Theoretical Physics and Center for Nanoscience, Ludwig-Maximilians-Universität München, Theresienstrasse 37, D-80333 Munich, Germany.
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7
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Eliazar I, Metzler R, Reuveni S. Gumbel central limit theorem for max-min and min-max. Phys Rev E 2019; 100:020104. [PMID: 31574728 DOI: 10.1103/physreve.100.020104] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2018] [Indexed: 11/07/2022]
Abstract
The max-min and min-max of matrices arise prevalently in science and engineering. However, in many real-world situations the computation of the max-min and min-max is challenging as matrices are large and full information about their entries is lacking. Here we take a statistical-physics approach and establish limit laws-akin to the central limit theorem-for the max-min and min-max of large random matrices. The limit laws intertwine random-matrix theory and extreme-value theory, couple the matrix dimensions geometrically, and assert that Gumbel statistics emerge irrespective of the matrix entries' distribution. Due to their generality and universality, as well as their practicality, these results are expected to have a host of applications in the physical sciences and beyond.
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Affiliation(s)
- Iddo Eliazar
- School of Chemistry, The Center for Physics and Chemistry of Living Systems, The Raymond and Beverly Sackler Center for Computational Molecular and Materials Science, and The Mark Ratner Institute for Single Molecule Chemistry, Tel Aviv University, Tel Aviv 6997801, Israel
| | - Ralf Metzler
- University of Potsdam, Institute of Physics and Astronomy, 14476 Potsdam, Germany
| | - Shlomi Reuveni
- School of Chemistry, The Center for Physics and Chemistry of Living Systems, The Raymond and Beverly Sackler Center for Computational Molecular and Materials Science, and The Mark Ratner Institute for Single Molecule Chemistry, Tel Aviv University, Tel Aviv 6997801, Israel
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8
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Bassler KE, Frey E, Zia RKP. Coevolution of nodes and links: Diversity-driven coexistence in cyclic competition of three species. Phys Rev E 2019; 99:022309. [PMID: 30934283 DOI: 10.1103/physreve.99.022309] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2018] [Indexed: 06/09/2023]
Abstract
When three species compete cyclically in a well-mixed, stochastic system of N individuals, extinction is known to typically occur at times scaling as the system size N. This happens, for example, in rock-paper-scissors games or conserved Lotka-Volterra models in which every pair of individuals can interact on a complete graph. Here we show that if the competing individuals also have a "social temperament" to be either introverted or extroverted, leading them to cut or add links, respectively, then long-living states in which all species coexist can occur. These nonequilibrium quasisteady states only occur when both introverts and extroverts are present, thus showing that diversity can lead to stability in complex systems. In this case, it enables a subtle balance between species competition and network dynamics to be maintained.
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Affiliation(s)
- Kevin E Bassler
- Department of Physics, University of Houston, Houston, Texas 77204-5005, USA; Texas Center for Superconductivity, University of Houston, Houston, Texas 77204-5002, USA; and Max-Planck-Institut für Physik komplexer Systeme, Nöthnitzer Strasse 38, Dresden D-01187, Germany
| | - Erwin Frey
- Arnold Sommerfeld Center for Theoretical Physics and Center for Nanoscience, Department of Physics, Ludwig-Maximilians-Universität München, Theresienstrasse 37, 80333 München, Germany
| | - R K P Zia
- Max-Planck-Institut für Physik komplexer Systeme, Nöthnitzer Strasse 38, Dresden D-01187, Germany and Center for Soft Matter and Biological Physics, Department of Physics, Virginia Polytechnic Institute and State University, Blacksburg, Virginia 24061, USA
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9
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Sadeghi S, Engel A. Random matrices and condensation into multiple states. Phys Rev E 2018; 97:032133. [PMID: 29776056 DOI: 10.1103/physreve.97.032133] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2017] [Indexed: 11/07/2022]
Abstract
In the present work, we employ methods from statistical mechanics of disordered systems to investigate static properties of condensation into multiple states in a general framework. We aim at showing how typical properties of random interaction matrices play a vital role in manifesting the statistics of condensate states. In particular, an analytical expression for the fraction of condensate states in the thermodynamic limit is provided that confirms the result of the mean number of coexisting species in a random tournament game. We also study the interplay between the condensation problem and zero-sum games with correlated random payoff matrices.
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Affiliation(s)
- Sina Sadeghi
- Institute of Physics, University of Oldenburg, D-26111 Oldenburg, Germany
| | - Andreas Engel
- Institute of Physics, University of Oldenburg, D-26111 Oldenburg, Germany
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10
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Schnell A, Ketzmerick R, Eckardt A. On the number of Bose-selected modes in driven-dissipative ideal Bose gases. Phys Rev E 2018; 97:032136. [PMID: 29776161 DOI: 10.1103/physreve.97.032136] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2018] [Indexed: 06/08/2023]
Abstract
In an ideal Bose gas that is driven into a steady state far from thermal equilibrium, a generalized form of Bose condensation can occur. Namely, the single-particle states unambiguously separate into two groups: the group of Bose-selected states, whose occupations increase linearly with the total particle number, and the group of all other states whose occupations saturate [Phys. Rev. Lett. 111, 240405 (2013)PRLTAO0031-900710.1103/PhysRevLett.111.240405]. However, so far very little is known about how the number of Bose-selected states depends on the properties of the system and its coupling to the environment. The answer to this question is crucial since systems hosting a single, a few, or an extensive number of Bose-selected states will show rather different behavior. While in the former two scenarios each selected mode acquires a macroscopic occupation, corresponding to (fragmented) Bose condensation, the latter case rather bears resemblance to a high-temperature state of matter. In this paper, we systematically investigate the number of Bose-selected states, considering different classes of the rate matrices that characterize the driven-dissipative ideal Bose gases in the limit of weak system-bath coupling. These include rate matrices with continuum limit, rate matrices of chaotic driven systems, random rate matrices, and rate matrices resulting from thermal baths that couple to a few observables only.
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Affiliation(s)
- Alexander Schnell
- Max-Planck-Institut für Physik komplexer Systeme, Nöthnitzer Straße 38, 01187 Dresden, Germany
| | - Roland Ketzmerick
- Max-Planck-Institut für Physik komplexer Systeme, Nöthnitzer Straße 38, 01187 Dresden, Germany
- Technische Universität Dresden, Institut für Theoretische Physik and Center for Dynamics, 01062 Dresden, Germany
| | - André Eckardt
- Max-Planck-Institut für Physik komplexer Systeme, Nöthnitzer Straße 38, 01187 Dresden, Germany
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11
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Klembt S, Stepanov P, Klein T, Minguzzi A, Richard M. Thermal Decoherence of a Nonequilibrium Polariton Fluid. PHYSICAL REVIEW LETTERS 2018; 120:035301. [PMID: 29400531 DOI: 10.1103/physrevlett.120.035301] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/19/2017] [Revised: 11/02/2017] [Indexed: 06/07/2023]
Abstract
Exciton polaritons constitute a unique realization of a quantum fluid interacting with its environment. Using selenide-based microcavities, we exploit this feature to warm up a polariton condensate in a controlled way and monitor its spatial coherence. We determine directly the amount of heat picked up by the condensate by measuring the phonon-polariton scattering rate and comparing it with the loss rate. We find that, upon increasing the heating rate, the spatial coherence length decreases markedly, while localized phase structures vanish, in good agreement with a stochastic mean-field theory. From the thermodynamical point of view, this regime is unique, as it involves a nonequilibrium quantum fluid with no well-defined temperature but which is nevertheless able to pick up heat with dramatic effects on the order parameter.
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Affiliation(s)
- Sebastian Klembt
- Université Grenoble Alpes, CNRS, Institut Néel, 38000 Grenoble, France
| | - Petr Stepanov
- Université Grenoble Alpes, CNRS, Institut Néel, 38000 Grenoble, France
| | - Thorsten Klein
- University of Bremen, P.O. Box 330440, 28334 Bremen, Germany
| | - Anna Minguzzi
- Université Grenoble Alpes, CNRS, LPMMC, 38000 Grenoble, France
| | - Maxime Richard
- Université Grenoble Alpes, CNRS, Institut Néel, 38000 Grenoble, France
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12
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Conformity, Anticonformity and Polarization of Opinions: Insights from a Mathematical Model of Opinion Dynamics. ENTROPY 2017. [DOI: 10.3390/e19070371] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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13
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Weber MF, Frey E. Master equations and the theory of stochastic path integrals. REPORTS ON PROGRESS IN PHYSICS. PHYSICAL SOCIETY (GREAT BRITAIN) 2017; 80:046601. [PMID: 28306551 DOI: 10.1088/1361-6633/aa5ae2] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
This review provides a pedagogic and self-contained introduction to master equations and to their representation by path integrals. Since the 1930s, master equations have served as a fundamental tool to understand the role of fluctuations in complex biological, chemical, and physical systems. Despite their simple appearance, analyses of master equations most often rely on low-noise approximations such as the Kramers-Moyal or the system size expansion, or require ad-hoc closure schemes for the derivation of low-order moment equations. We focus on numerical and analytical methods going beyond the low-noise limit and provide a unified framework for the study of master equations. After deriving the forward and backward master equations from the Chapman-Kolmogorov equation, we show how the two master equations can be cast into either of four linear partial differential equations (PDEs). Three of these PDEs are discussed in detail. The first PDE governs the time evolution of a generalized probability generating function whose basis depends on the stochastic process under consideration. Spectral methods, WKB approximations, and a variational approach have been proposed for the analysis of the PDE. The second PDE is novel and is obeyed by a distribution that is marginalized over an initial state. It proves useful for the computation of mean extinction times. The third PDE describes the time evolution of a 'generating functional', which generalizes the so-called Poisson representation. Subsequently, the solutions of the PDEs are expressed in terms of two path integrals: a 'forward' and a 'backward' path integral. Combined with inverse transformations, one obtains two distinct path integral representations of the conditional probability distribution solving the master equations. We exemplify both path integrals in analysing elementary chemical reactions. Moreover, we show how a well-known path integral representation of averaged observables can be recovered from them. Upon expanding the forward and the backward path integrals around stationary paths, we then discuss and extend a recent method for the computation of rare event probabilities. Besides, we also derive path integral representations for processes with continuous state spaces whose forward and backward master equations admit Kramers-Moyal expansions. A truncation of the backward expansion at the level of a diffusion approximation recovers a classic path integral representation of the (backward) Fokker-Planck equation. One can rewrite this path integral in terms of an Onsager-Machlup function and, for purely diffusive Brownian motion, it simplifies to the path integral of Wiener. To make this review accessible to a broad community, we have used the language of probability theory rather than quantum (field) theory and do not assume any knowledge of the latter. The probabilistic structures underpinning various technical concepts, such as coherent states, the Doi-shift, and normal-ordered observables, are thereby made explicit.
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Affiliation(s)
- Markus F Weber
- Arnold Sommerfeld Center for Theoretical Physics and Center for NanoScience, Department of Physics, Ludwig-Maximilians-Universität München, Theresienstraße 37, 80333 München, Germany
| | - Erwin Frey
- Arnold Sommerfeld Center for Theoretical Physics and Center for NanoScience, Department of Physics, Ludwig-Maximilians-Universität München, Theresienstraße 37, 80333 München, Germany
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14
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Pickton J, Hopcraft KI, Jakeman E. The emergence of waves in random discrete systems. Sci Rep 2016; 6:21. [PMID: 28003658 PMCID: PMC5431357 DOI: 10.1038/s41598-016-0022-3] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2016] [Accepted: 10/24/2016] [Indexed: 11/22/2022] Open
Abstract
Essential criteria for the emergence of wave-like manifestations occurring in an entirely discrete system are identified using a simple model for the movement of particles through a network. The dynamics are entirely stochastic and memoryless involving a birth-death-migration process. The requirements are that the network should have at least three nodes, that migration should have a directional bias, and that the particle dynamics have a non-local dependence. Well defined bifurcations mark transitions between amorphous, wave-like and collapsed states with an intermittent regime between the latter two.
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Affiliation(s)
- John Pickton
- University of Nottingham, School of Mathematical Sciences, Nottingham, NG7 2RD, UK.
| | - Keith Iain Hopcraft
- University of Nottingham, School of Mathematical Sciences, Nottingham, NG7 2RD, UK
| | - Eric Jakeman
- University of Nottingham, School of Mathematical Sciences, Nottingham, NG7 2RD, UK
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15
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Szolnoki A, Perc M. Biodiversity in models of cyclic dominance is preserved by heterogeneity in site-specific invasion rates. Sci Rep 2016; 6:38608. [PMID: 27917952 PMCID: PMC5137108 DOI: 10.1038/srep38608] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2016] [Accepted: 11/09/2016] [Indexed: 12/20/2022] Open
Abstract
Global, population-wide oscillations in models of cyclic dominance may result in the collapse of biodiversity due to the accidental extinction of one species in the loop. Previous research has shown that such oscillations can emerge if the interaction network has small-world properties, and more generally, because of long-range interactions among individuals or because of mobility. But although these features are all common in nature, global oscillations are rarely observed in actual biological systems. This begets the question what is the missing ingredient that would prevent local oscillations to synchronize across the population to form global oscillations. Here we show that, although heterogeneous species-specific invasion rates fail to have a noticeable impact on species coexistence, randomness in site-specific invasion rates successfully hinders the emergence of global oscillations and thus preserves biodiversity. Our model takes into account that the environment is often not uniform but rather spatially heterogeneous, which may influence the success of microscopic dynamics locally. This prevents the synchronization of locally emerging oscillations, and ultimately results in a phenomenon where one type of randomness is used to mitigate the adverse effects of other types of randomness in the system.
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Affiliation(s)
- Attila Szolnoki
- Institute of Technical Physics and Materials Science, Centre for Energy Research, Hungarian Academy of Sciences, P.O. Box 49, H-1525 Budapest, Hungary
| | - Matjaž Perc
- Faculty of Natural Sciences and Mathematics, University of Maribor, Koroška cesta 160, SI-2000 Maribor, Slovenia.,CAMTP - Center for Applied Mathematics and Theoretical Physics, University of Maribor, Krekova 2, SI-2000 Maribor, Slovenia
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16
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A Five Species Cyclically Dominant Evolutionary Game with Fixed Direction: A New Way to Produce Self-Organized Spatial Patterns. ENTROPY 2016. [DOI: 10.3390/e18080284] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
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Szolnoki A, Perc M. Zealots tame oscillations in the spatial rock-paper-scissors game. Phys Rev E 2016; 93:062307. [PMID: 27415280 DOI: 10.1103/physreve.93.062307] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2016] [Indexed: 06/06/2023]
Abstract
The rock-paper-scissors game is a paradigmatic model for biodiversity, with applications ranging from microbial populations to human societies. Research has shown, however, that mobility jeopardizes biodiversity by promoting the formation of spiral waves, especially if there is no conservation law in place for the total number of competing players. First, we show that even if such a conservation law applies, mobility still jeopardizes biodiversity in the spatial rock-paper-scissors game if only a small fraction of links of the square lattice is randomly rewired. Secondly, we show that zealots are very effective in taming the amplitude of oscillations that emerge due to mobility and/or interaction randomness, and this regardless of whether the later is quenched or annealed. While even a tiny fraction of zealots brings significant benefits, at 5% occupancy zealots practically destroy all oscillations regardless of the intensity of mobility, and regardless of the type and strength of randomness in the interaction structure. Interestingly, by annealed randomness the impact of zealots is qualitatively the same as by mobility, which highlights that fast diffusion does not necessarily destroy the coexistence of species, and that zealotry thus helps to recover the stable mean-field solution. Our results strengthen the important role of zealots in models of cyclic dominance, and they reveal fascinating evolutionary outcomes in structured populations that are a unique consequence of such uncompromising behavior.
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Affiliation(s)
- Attila Szolnoki
- Institute of Technical Physics and Materials Science, Centre for Energy Research, Hungarian Academy of Sciences, P.O. Box 49, H-1525 Budapest, Hungary
| | - Matjaž Perc
- Faculty of Natural Sciences and Mathematics, University of Maribor, Koroška cesta 160, SI-2000 Maribor, Slovenia
- CAMTP - Center for Applied Mathematics and Theoretical Physics, University of Maribor, Krekova 2, SI-2000 Maribor, Slovenia
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Vorberg D, Wustmann W, Schomerus H, Ketzmerick R, Eckardt A. Nonequilibrium steady states of ideal bosonic and fermionic quantum gases. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2015; 92:062119. [PMID: 26764644 DOI: 10.1103/physreve.92.062119] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/12/2015] [Indexed: 06/05/2023]
Abstract
We investigate nonequilibrium steady states of driven-dissipative ideal quantum gases of both bosons and fermions. We focus on systems of sharp particle number that are driven out of equilibrium either by the coupling to several heat baths of different temperature or by time-periodic driving in combination with the coupling to a heat bath. Within the framework of (Floquet-)Born-Markov theory, several analytical and numerical methods are described in detail. This includes a mean-field theory in terms of occupation numbers, an augmented mean-field theory taking into account also nontrivial two-particle correlations, and quantum-jump-type Monte Carlo simulations. For the case of the ideal Fermi gas, these methods are applied to simple lattice models and the possibility of achieving exotic states via bath engineering is pointed out. The largest part of this work is devoted to bosonic quantum gases and the phenomenon of Bose selection, a nonequilibrium generalization of Bose condensation, where multiple single-particle states are selected to acquire a large occupation [Phys. Rev. Lett. 111, 240405 (2013)]. In this context, among others, we provide a theory for transitions where the set of selected states changes, describe an efficient algorithm for finding the set of selected states, investigate beyond-mean-field effects, and identify the dominant mechanisms for heat transport in the Bose-selected state.
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Affiliation(s)
- Daniel Vorberg
- Max-Planck-Institut für Physik komplexer Systeme, Nöthnitzer Strasse 38, 01187 Dresden, Germany
| | - Waltraut Wustmann
- Max-Planck-Institut für Physik komplexer Systeme, Nöthnitzer Strasse 38, 01187 Dresden, Germany
- Technische Universität Dresden, Institut für Theoretische Physik and Center for Dynamics, 01062 Dresden, Germany
| | - Henning Schomerus
- Max-Planck-Institut für Physik komplexer Systeme, Nöthnitzer Strasse 38, 01187 Dresden, Germany
- Department of Physics, Lancaster University, Lancaster LA1 4YB, United Kingdom
| | - Roland Ketzmerick
- Max-Planck-Institut für Physik komplexer Systeme, Nöthnitzer Strasse 38, 01187 Dresden, Germany
- Technische Universität Dresden, Institut für Theoretische Physik and Center for Dynamics, 01062 Dresden, Germany
| | - André Eckardt
- Max-Planck-Institut für Physik komplexer Systeme, Nöthnitzer Strasse 38, 01187 Dresden, Germany
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