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Clark FE, Greggor AL, Montgomery SH, Plotnik JM. The endangered brain: actively preserving ex-situ animal behaviour and cognition will benefit in-situ conservation. ROYAL SOCIETY OPEN SCIENCE 2023; 10:230707. [PMID: 37650055 PMCID: PMC10465207 DOI: 10.1098/rsos.230707] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/24/2023] [Accepted: 08/15/2023] [Indexed: 09/01/2023]
Abstract
Endangered species have small, unsustainable population sizes that are geographically or genetically restricted. Ex-situ conservation programmes are therefore faced with the challenge of breeding sufficiently sized, genetically diverse populations earmarked for reintroduction that have the behavioural skills to survive and breed in the wild. Yet, maintaining historically beneficial behaviours may be insufficient, as research continues to suggest that certain cognitive-behavioural skills and flexibility are necessary to cope with human-induced rapid environmental change (HIREC). This paper begins by reviewing interdisciplinary studies on the 'captivity effect' in laboratory, farmed, domesticated and feral vertebrates and finds that captivity imposes rapid yet often reversible changes to the brain, cognition and behaviour. However, research on this effect in ex-situ conservation sites is lacking. This paper reveals an apparent mismatch between ex-situ enrichment aims and the cognitive-behavioural skills possessed by animals currently coping with HIREC. After synthesizing literature across neuroscience, behavioural biology, comparative cognition and field conservation, it seems that ex-situ endangered species deemed for reintroduction may have better chances of coping with HIREC if their natural cognition and behavioural repertoires are actively preserved. Evaluating the effects of environmental challenges rather than captivity per se is recommended, in addition to using targeted cognitive enrichment.
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Affiliation(s)
- Fay E. Clark
- School of Psychological Science, University of Bristol, Bristol, UK
| | | | | | - Joshua M. Plotnik
- Department of Psychology, Hunter College, City University of New York, New York, NY, USA
- Department of Psychology, The Graduate Center, City University of New York, New York, NY, USA
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Demmel Ferreira MM, Degrange FJ, Tirao GA, Tambussi CP. Endocranial morphology of the piciformes (Aves, Coraciimorphae): Functional and ecological implications. J Anat 2021; 239:167-183. [PMID: 33655532 PMCID: PMC8197964 DOI: 10.1111/joa.13416] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2020] [Revised: 02/12/2021] [Accepted: 02/12/2021] [Indexed: 12/13/2022] Open
Abstract
We used three-dimensional digital models to investigate the brain and endosseous labyrinth morphology of selected Neotropical Piciformes (Picidae, Ramphastidae, Galbulidae and Bucconidae). Remarkably, the brain morphology of Galbulidae clearly separates from species of other families. The eminentiae sagittales of Galbulidae and Bucconidae (insectivorous with high aerial maneuverability abilities) are smaller than those of the toucans (scansorial frugivores). Galbula showed the proportionally largest cerebellum, and Ramphastidae showed the least foliated one. Optic lobes ratio relative to the telencephalic hemispheres showed a strong phylogenetic signal. Three hypotheses were tested: (a) insectivorous taxa that need precise and fast movements to catch their prey, have well developed eminentiae sagittales compared to fruit eaters, (b) species that require high beak control would show larger cerebellum compared to other brain regions and higher number of visible folia and (c) there are marked differences between the brain shape of the four families studied here that bring valuable information of this interesting bird group. Hypotheses H1 and H2 are rejected, meanwhile H3 is accepted.
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Ziegler A, Sagorny C. Holistic description of new deep sea megafauna (Cephalopoda: Cirrata) using a minimally invasive approach. BMC Biol 2021; 19:81. [PMID: 33888110 PMCID: PMC8063452 DOI: 10.1186/s12915-021-01000-9] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2020] [Accepted: 03/07/2021] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND In zoology, species descriptions conventionally rely on invasive morphological techniques, frequently leading to damage of the specimens and thus only a partial understanding of their structural complexity. More recently, non-destructive imaging techniques have successfully been used to describe smaller fauna, but this approach has so far not been applied to identify or describe larger animal species. Here, we present a combination of entirely non-invasive as well as minimally invasive methods that permit taxonomic descriptions of large zoological specimens in a more comprehensive manner. RESULTS Using the single available representative of an allegedly novel species of deep-sea cephalopod (Mollusca: Cephalopoda), digital photography, standardized external measurements, high-field magnetic resonance imaging, micro-computed tomography, and DNA barcoding were combined to gather all morphological and molecular characters relevant for a full species description. The results show that this specimen belongs to the cirrate octopod (Octopoda: Cirrata) genus Grimpoteuthis Robson, 1932. Based on the number of suckers, position of web nodules, cirrus length, presence of a radula, and various shell characters, the specimen is designated as the holotype of a new species of dumbo octopus, G. imperator sp. nov. The digital nature of the acquired data permits a seamless online deposition of raw as well as derived morphological and molecular datasets in publicly accessible repositories. CONCLUSIONS Using high-resolution, non-invasive imaging systems intended for the analysis of larger biological objects, all external as well as internal morphological character states relevant for the identification of a new megafaunal species were obtained. Potentially harmful effects on this unique deep-sea cephalopod specimen were avoided by scanning the fixed animal without admixture of a contrast agent. Additional support for the taxonomic placement of the new dumbo octopus species was obtained through DNA barcoding, further underlining the importance of combining morphological and molecular datasets for a holistic description of zoological specimens.
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Affiliation(s)
- Alexander Ziegler
- Institut für Evolutionsbiologie und Ökologie, Rheinische Friedrich-Wilhelms-Universität, An der Immenburg 1, 53121, Bonn, Germany.
| | - Christina Sagorny
- Institut für Evolutionsbiologie und Ökologie, Rheinische Friedrich-Wilhelms-Universität, An der Immenburg 1, 53121, Bonn, Germany
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Sakagami R, Kawabe S. Endocranial anatomy of the ceratopsid dinosaur Triceratops and interpretations of sensory and motor function. PeerJ 2020; 8:e9888. [PMID: 32999761 PMCID: PMC7505063 DOI: 10.7717/peerj.9888] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2020] [Accepted: 08/17/2020] [Indexed: 12/23/2022] Open
Abstract
Triceratops is one of the well-known Cretaceous ceratopsian dinosaurs. The ecology of Triceratops has been controversial because of its unique morphological features. However, arguments based on brain and inner ear structures have been scarce. In this study, two braincases (FPDM-V-9677 and FPDM-V-9775) were analyzed with computed tomography to generate three-dimensional virtual renderings of the endocasts of the cranial cavities and bony labyrinths. Quantitative analysis, including comparison of linear measurements of the degree of development of the olfactory bulb and inner ear, was performed on these virtual endocasts to acquire detailed neuroanatomical information. When compared with other dinosaurs, the olfactory bulb of Triceratops is relatively small, indicating that Triceratops had a reduced acuity in sense of smell. The lateral semicircular canal reveals that the basicranial axis of Triceratops is approximately 45° to the ground, which is an effective angle to display their horns as well as frill, and to graze. The semicircular canals of Triceratops are relatively smaller than those of primitive ceratopsians, such as Psittacosaurus and Protoceratops, suggesting that sensory input for the reflexive stabilization of gaze and posture of Triceratops was less developed than that of primitive ceratopsians. The cochlear length of Triceratops is relatively short when compared with other dinosaurs. Because cochlear length correlates with hearing frequency, Triceratops was likely adapted to hearing low frequencies.
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Affiliation(s)
- Rina Sakagami
- Department of Bioscience and Biotechnology, Fukui Prefectural University, Yoshida-gun, Eiheiji-cho, Fukui, Japan
| | - Soichiro Kawabe
- Institute of Dinosaur Research, Fukui Prefectural University, Yoshida-gun, Eiheiji-cho, Fukui, Japan.,Fukui Prefectural Dinosaur Museum, Katsuyama, Fukui, Japan
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Scadeng M, McKenzie C, He W, Bartsch H, Dubowitz DJ, Stec D, St. Leger J. Morphology of the Amazonian Teleost Genus Arapaima Using Advanced 3D Imaging. Front Physiol 2020; 11:260. [PMID: 32395105 PMCID: PMC7197331 DOI: 10.3389/fphys.2020.00260] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2019] [Accepted: 03/06/2020] [Indexed: 11/13/2022] Open
Abstract
The arapaima is the largest of the extant air-breathing freshwater fishes. Their respiratory gas bladder is arguably the most striking of all the adaptations to living in the hypoxic waters of the Amazon basin, in which dissolved oxygen can reach 0 ppm (0 mg/l) at night. As obligatory air-breathers, arapaima have undergone extensive anatomical and physiological adaptations in almost every organ system. These changes were evaluated using magnetic resonance and computed tomography imaging, gross necropsy, and histology to create a comprehensive morphological assessment of this unique fish. Segmentation of advanced imaging data allowed for creation of anatomically accurate and quantitative 3D models of organs and their spatial relationships. The deflated gas bladder [1.96% body volume (BV)] runs the length of the coelomic cavity, and encompasses the kidneys (0.35% BV). It is compartmentalized by a highly vascularized webbing comprising of ediculae and inter-edicular septa lined with epithelium acting as a gas exchange surface analogous to a lung. Gills have reduced surface area, with severe blunting and broadening of the lamellae. The kidneys are not divided into separate regions, and have hematopoietic and excretory tissue interspersed throughout. The heart (0.21% BV) is encased in a thick layer of lipid rich tissue. Arapaima have an unusually large telencephalon (28.3% brain volume) for teleosts. The characteristics that allow arapaima to perfectly exploit their native environment also make them easy targets for overfishing. In addition, their habitat is at high risk from climate change and anthropogenic activities which are likely to result is fewer specimens living in the wild, or achieving their growth potential of up to 4.5 m in length.
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Affiliation(s)
- Miriam Scadeng
- Department of Radiology, University of California, San Diego, San Diego, CA, United States
- Department of Anatomy and Medical Imaging, University of Auckland, Auckland, New Zealand
| | | | - Weston He
- Department of Radiology, University of California, San Diego, San Diego, CA, United States
- NOVA Southeastern University, Fort Lauderdale, FL, United States
| | - Hauke Bartsch
- Department of Radiology, University of California, San Diego, San Diego, CA, United States
- Mohn Medical Imaging and Visualization Centre, Haukeland University Hospital, Bergen, Norway
| | - David J. Dubowitz
- Department of Radiology, University of California, San Diego, San Diego, CA, United States
- Department of Anatomy and Medical Imaging, University of Auckland, Auckland, New Zealand
| | - Dominik Stec
- Department of Radiology, University of California, San Diego, San Diego, CA, United States
| | - Judy St. Leger
- Department of Biomedical Sciences, College of Veterinary Medicine, Cornell University, Ithaca, NY, United States
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6
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Hoops D, Desfilis E, Ullmann JFP, Janke AL, Stait-Gardner T, Devenyi GA, Price WS, Medina L, Whiting MJ, Keogh JS. A 3D MRI-based atlas of a lizard brain. J Comp Neurol 2018; 526:2511-2547. [PMID: 29931765 DOI: 10.1002/cne.24480] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2017] [Revised: 04/01/2018] [Accepted: 04/03/2018] [Indexed: 02/05/2023]
Abstract
Magnetic resonance imaging (MRI) is an established technique for neuroanatomical analysis, being particularly useful in the medical sciences. However, the application of MRI to evolutionary neuroscience is still in its infancy. Few magnetic resonance brain atlases exist outside the standard model organisms in neuroscience and no magnetic resonance atlas has been produced for any reptile brain. A detailed understanding of reptilian brain anatomy is necessary to elucidate the evolutionary origin of enigmatic brain structures such as the cerebral cortex. Here, we present a magnetic resonance atlas for the brain of a representative squamate reptile, the Australian tawny dragon (Agamidae: Ctenophorus decresii), which has been the subject of numerous ecological and behavioral studies. We used a high-field 11.74T magnet, a paramagnetic contrasting-enhancing agent and minimum-deformation modeling of the brains of thirteen adult male individuals. From this, we created a high-resolution three-dimensional model of a lizard brain. The 3D-MRI model can be freely downloaded and allows a better comprehension of brain areas, nuclei, and fiber tracts, facilitating comparison with other species and setting the basis for future comparative evolution imaging studies. The MRI model and atlas of a tawny dragon brain (Ctenophorus decresii) can be viewed online and downloaded using the Wiley Biolucida Server at wiley.biolucida.net.
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Affiliation(s)
- Daniel Hoops
- Division of Ecology & Evolution, Research School of Biology, The Australian National University, Canberra, ACT, Australia
| | - Ester Desfilis
- Laboratory of Evolutionary and Developmental Neurobiology, Department of Experimental Medicine, Lleida Institute for Biomedical Research Fundació Dr. Pifarré (IRBLleida), University of Lleida, Lleida, Spain
| | - Jeremy F P Ullmann
- Center for Advanced Imaging, The University of Queensland, Brisbane, QLD, Australia
| | - Andrew L Janke
- Center for Advanced Imaging, The University of Queensland, Brisbane, QLD, Australia
| | - Timothy Stait-Gardner
- Nanoscale Organization and Dynamics Group, Western Sydney University, Penrith, NSW, Australia
| | - Gabriel A Devenyi
- Douglas Hospital Research Centre, Douglas Mental Health University Institute, Montreal, Quebec, Canada.,Department of Psychiatry, McGill University, Montreal, Quebec, Canada
| | - William S Price
- Nanoscale Organization and Dynamics Group, Western Sydney University, Penrith, NSW, Australia
| | - Loreta Medina
- Laboratory of Evolutionary and Developmental Neurobiology, Department of Experimental Medicine, Lleida Institute for Biomedical Research Fundació Dr. Pifarré (IRBLleida), University of Lleida, Lleida, Spain
| | - Martin J Whiting
- Department of Biological Sciences, Macquarie University, Sydney, NSW, Australia
| | - J Scott Keogh
- Division of Ecology & Evolution, Research School of Biology, The Australian National University, Canberra, ACT, Australia
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Kawabe S, Tsunekawa N, Kudo K, Tirawattanawanich C, Akishinonomiya F, Endo H. Morphological variation in brain through domestication of fowl. J Anat 2017; 231:287-297. [PMID: 28542781 PMCID: PMC5522892 DOI: 10.1111/joa.12623] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 03/15/2017] [Indexed: 11/30/2022] Open
Abstract
Great variations in the size, shape, color, feather structure and behavior are observed among fowl breeds. Because many types of domestic fowls have been bred for various purposes, they are ideal to assess the relationship between brain morphology and avian biology. However, little is known about changes in brain shape that may have occurred during fowl domestication. We analyzed the brains of red jungle fowl and domestic fowl to clarify differences in the brain shape between these breeds, as well as the shape changes associated with size enlargement using three-dimensional geometric morphometrics. Principal component and multivariate regression analyses showed that ventrodorsal bending, anteroposterior elongation and width reduction were significantly correlated with brain size. According to the size-dependent analysis, the red jungle fowl brain has an intermediate shape between the brain of young broilers and that of large domestic fowl and adult broilers. After the size effect is removed, geometric morphometric analyses show that the brain of red jungle fowl is different from that of domestic fowl, with large round cerebral hemispheres. Significant correlations exist between the skull length and brain volume among fowl, while the brain volume relative to the skull length is distinctly larger in red jungle fowl compared with domestic fowl. The distinct brain shape and increased relative brain size of red jungle fowl may be driven by the presence of large, rounded cerebral hemispheres.
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Affiliation(s)
- Soichiro Kawabe
- Fukui Prefectural Dinosaur MuseumFukuiJapan
- Gifu Prefectural MuseumGifuJapan
| | - Naoki Tsunekawa
- Department of Bioscience in Daily LifeCollage of Bioresource SciencesNihon UniversityKanagawaJapan
| | - Kohei Kudo
- Department of Global Agricultural SciencesGraduate School of Agriculture and Agricultural Life SciencesThe University of TokyoTokyoJapan
| | | | | | - Hideki Endo
- The University MuseumThe University of TokyoTokyoJapan
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Jirak D, Janacek J. Volume of the crocodilian brain and endocast during ontogeny. PLoS One 2017; 12:e0178491. [PMID: 28614349 PMCID: PMC5470673 DOI: 10.1371/journal.pone.0178491] [Citation(s) in RCA: 31] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2016] [Accepted: 05/14/2017] [Indexed: 11/18/2022] Open
Abstract
Understanding complex situations and planning difficult actions require a brain of appropriate size. Animal encephalisation provides an indirect information about these abilities. The brain is entirely composed of soft tissue and, as such, rarely fossilises. As a consequence, the brain proportions and morphology of some extinct vertebrates are usually only inferred from their neurocranial endocasts. However, because the morphological configuration of the brain is not fully reflected in the endocast, knowledge of the brain/endocast relationship is essential (especially the ratio of brain volume to endocast volume or the equivalent proportion of interstitial tissue) for studying the endocasts of extinct animals. Here we assess the encephalic volume and structure of modern crocodilians. The results we obtained using ex vivo magnetic resonance imaging reveal how the endoneurocranial cavity and brain compartments of crocodilians change configuration during ontogeny. We conclude that the endocasts of adult crocodilians are elongated and expanded while their brains are more linearly organised. The highest proportion of brain tissue to endocast volume is in the prosencephalon at over 50% in all but the largest animals, whereas the proportion in other brain segments is under 50% in all but the smallest animals and embryos. Our results may enrich the field of palaeontological study by offering more precise phylogenetic interpretations of the neuroanatomic characteristics of extinct vertebrates at various ontogenetic stages.
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Affiliation(s)
- Daniel Jirak
- MR Unit, Department of Diagnostic and Interventional Radiology, Institute for Clinical and Experimental Medicine, Prague, Czech Republic
- Institute of Biophysics and Informatics, 1 Medicine Faculty, Charles University, Prague, Czech Republic
| | - Jiri Janacek
- Department of Biomathematics, Institute of Physiology, Czech Academy of Sciences, Prague, Czech Republic
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Canine neuroanatomy: Development of a 3D reconstruction and interactive application for undergraduate veterinary education. PLoS One 2017; 12:e0168911. [PMID: 28192461 PMCID: PMC5305238 DOI: 10.1371/journal.pone.0168911] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2016] [Accepted: 12/08/2016] [Indexed: 11/19/2022] Open
Abstract
Current methods used to communicate and present the complex arrangement of vasculature related to the brain and spinal cord is limited in undergraduate veterinary neuroanatomy training. Traditionally it is taught with 2-dimensional (2D) diagrams, photographs and medical imaging scans which show a fixed viewpoint. 2D representations of 3-dimensional (3D) objects however lead to loss of spatial information, which can present problems when translating this to the patient. Computer-assisted learning packages with interactive 3D anatomical models have become established in medical training, yet equivalent resources are scarce in veterinary education. For this reason, we set out to develop a workflow methodology creating an interactive model depicting the vasculature of the canine brain that could be used in undergraduate education. Using MR images of a dog and several commonly available software programs, we set out to show how combining image editing, segmentation and surface generation, 3D modeling and texturing can result in the creation of a fully interactive application for veterinary training. In addition to clearly identifying a workflow methodology for the creation of this dataset, we have also demonstrated how an interactive tutorial and self-assessment tool can be incorporated into this. In conclusion, we present a workflow which has been successful in developing a 3D reconstruction of the canine brain and associated vasculature through segmentation, surface generation and post-processing of readily available medical imaging data. The reconstructed model was implemented into an interactive application for veterinary education that has been designed to target the problems associated with learning neuroanatomy, primarily the inability to visualise complex spatial arrangements from 2D resources. The lack of similar resources in this field suggests this workflow is original within a veterinary context. There is great potential to explore this method, and introduce a new dimension into veterinary education and training.
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Balanoff AM, Bever GS, Colbert MW, Clarke JA, Field DJ, Gignac PM, Ksepka DT, Ridgely RC, Smith NA, Torres CR, Walsh S, Witmer LM. Best practices for digitally constructing endocranial casts: examples from birds and their dinosaurian relatives. J Anat 2016; 229:173-90. [PMID: 26403623 PMCID: PMC4948053 DOI: 10.1111/joa.12378] [Citation(s) in RCA: 63] [Impact Index Per Article: 7.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 08/17/2015] [Indexed: 11/28/2022] Open
Abstract
The rapidly expanding interest in, and availability of, digital tomography data to visualize casts of the vertebrate endocranial cavity housing the brain (endocasts) presents new opportunities and challenges to the field of comparative neuroanatomy. The opportunities are many, ranging from the relatively rapid acquisition of data to the unprecedented ability to integrate critically important fossil taxa. The challenges consist of navigating the logistical barriers that often separate a researcher from high-quality data and minimizing the amount of non-biological variation expressed in endocasts - variation that may confound meaningful and synthetic results. Our purpose here is to outline preferred approaches for acquiring digital tomographic data, converting those data to an endocast, and making those endocasts as meaningful as possible when considered in a comparative context. This review is intended to benefit those just getting started in the field but also serves to initiate further discussion between active endocast researchers regarding the best practices for advancing the discipline. Congruent with the theme of this volume, we draw our examples from birds and the highly encephalized non-avian dinosaurs that comprise closely related outgroups along their phylogenetic stem lineage.
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Affiliation(s)
- Amy M. Balanoff
- Department of Anatomical SciencesStony Brook UniversityStony BrookNYUSA
| | - G. S. Bever
- Department of AnatomyNew York Institute of TechnologyCollege of Osteopathic MedicineOld WestburyNYUSA
| | - Matthew W. Colbert
- Department of Geological SciencesThe University of Texas at AustinAustinTXUSA
| | - Julia A. Clarke
- Department of Geological SciencesThe University of Texas at AustinAustinTXUSA
| | - Daniel J. Field
- Department of Geology and GeophysicsYale UniversityNew HavenCTUSA
| | - Paul M. Gignac
- Department of Anatomy and Cell BiologyOklahoma State University Center for Health SciencesTulsaOKUSA
| | | | - Ryan C. Ridgely
- Department of Biomedical SciencesHeritage College of Osteopathic MedicineOhio UniversityAthensOHUSA
| | - N. Adam Smith
- Department of Earth SciencesThe Field Museum of Natural HistoryChicagoILUSA
| | | | - Stig Walsh
- Department of Natural SciencesNational Museums ScotlandEdinburghUK
| | - Lawrence M. Witmer
- Department of Biomedical SciencesHeritage College of Osteopathic MedicineOhio UniversityAthensOHUSA
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Yopak K, Galinsky VL, Berquist R, Frank LR. Quantitative Classification of Cerebellar Foliation in Cartilaginous Fishes (Class: Chondrichthyes) Using Three-Dimensional Shape Analysis and Its Implications for Evolutionary Biology. BRAIN, BEHAVIOR AND EVOLUTION 2016; 87:252-64. [PMID: 27450795 PMCID: PMC5023489 DOI: 10.1159/000446904] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/19/2015] [Accepted: 05/13/2016] [Indexed: 11/19/2022]
Abstract
A true cerebellum appeared at the onset of the chondrichthyan (sharks, batoids, and chimaerids) radiation and is known to be essential for executing fast, accurate, and efficient movement. In addition to a high degree of variation in size, the corpus cerebellum in this group has a high degree of variation in convolution (or foliation) and symmetry, which ranges from a smooth cerebellar surface to deep, branched convexities and folds, although the functional significance of this trait is unclear. As variation in the degree of foliation similarly exists throughout vertebrate evolution, it becomes critical to understand this evolutionary process in a wide variety of species. However, current methods are either qualitative and lack numerical rigor or they are restricted to two dimensions. In this paper, a recently developed method for the characterization of shapes embedded within noisy, three-dimensional data called spherical wave decomposition (SWD) is applied to the problem of characterizing cerebellar foliation in cartilaginous fishes. The SWD method provides a quantitative characterization of shapes in terms of well-defined mathematical functions. An additional feature of the SWD method is the construction of a statistical criterion for the optimal fit, which represents the most parsimonious choice of parameters that fits to the data without overfitting to background noise. We propose that this optimal fit can replace a previously described qualitative visual foliation index (VFI) in cartilaginous fishes with a quantitative analog, i.e. the cerebellar foliation index (CFI). The capability of the SWD method is demonstrated in a series of volumetric images of brains from different chondrichthyan species that span the range of foliation gradings currently described for this group. The CFI is consistent with the qualitative grading provided by the VFI, delivers a robust measure of cerebellar foliation, and can provide a quantitative basis for brain shape characterization across taxa.
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Affiliation(s)
- Kara Yopak
- UWA Oceans Institute and the School of Animal Biology, University of Western Australia, Crawley, WA 6009
| | - Vitaly L. Galinsky
- Center for Scientific Computation in Imaging, University of California, San Diego
| | - Rachel Berquist
- Center for Scientific Computation in Imaging, University of California, San Diego
| | - Lawrence R. Frank
- Center for Scientific Computation in Imaging, University of California, San Diego
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12
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Jirak D, Janacek J, Kear BP. A combined MR and CT study for precise quantitative analysis of the avian brain. Sci Rep 2015; 5:16002. [PMID: 26515262 PMCID: PMC4626839 DOI: 10.1038/srep16002] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2015] [Accepted: 10/07/2015] [Indexed: 11/28/2022] Open
Abstract
Brain size is widely used as a measure of behavioural complexity and sensory-locomotive capacity in avians but has largely relied upon laborious dissections, endoneurocranial tissue displacement, and physical measurement to derive comparative volumes. As an alternative, we present a new precise calculation method based upon coupled magnetic resonance (MR) imaging and computed tomography (CT). Our approach utilizes a novel interactive Fakir probe cross-referenced with an automated CT protocol to efficiently generate total volumes and surface areas of the brain tissue and endoneurocranial space, as well as the discrete cephalic compartments. We also complemented our procedures by using sodium polytungstate (SPT) as a contrast agent. This greatly enhanced CT applications but did not degrade MR quality and is therefore practical for virtual brain tissue reconstructions employing multiple imaging modalities. To demonstrate our technique, we visualized sex-based brain size differentiation in a sample set of Ring-necked pheasants (Phasianus colchicus). This revealed no significant variance in relative volume or surface areas of the primary brain regions. Rather, a trend towards isometric enlargement of the total brain and endoneurocranial space was evidenced in males versus females, thus advocating a non-differential sexually dimorphic pattern of brain size increase amongst these facultatively flying birds.
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Affiliation(s)
- Daniel Jirak
- MR Unit, Department of Diagnostic and Interventional Radiology, Institute for Clinical and Experimental Medicine, Vídeňská 1958/9, 140 21 Prague, Czech Republic
- Institute of Biophysics and Informatics, 1st Medicine Faculty, Charles University, Prague, Czech Republic
| | - Jiri Janacek
- Department of Biomathematics, Institute of Physiology, The Czech Academy of Sciences, Vídeňská 1083, 142 20 Prague, Czech Republic
| | - Benjamin P. Kear
- Museum of Evolution, Uppsala University, Norbyvägen 16, SE-752 36 Uppsala, Sweden
- Palaeobiology Programme, Department of Earth Sciences, Uppsala University, Villavägen 16, SE-752 36 Uppsala, Sweden
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Kawabe S, Matsuda S, Tsunekawa N, Endo H. Ontogenetic Shape Change in the Chicken Brain: Implications for Paleontology. PLoS One 2015; 10:e0129939. [PMID: 26053849 PMCID: PMC4460028 DOI: 10.1371/journal.pone.0129939] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2015] [Accepted: 05/14/2015] [Indexed: 11/19/2022] Open
Abstract
Paleontologists have investigated brain morphology of extinct birds with little information on post-hatching changes in avian brain morphology. Without the knowledge of ontogenesis, assessing brain morphology in fossil taxa could lead to misinterpretation of the phylogeny or neurosensory development of extinct species. Hence, it is imperative to determine how avian brain morphology changes during post-hatching growth. In this study, chicken brain shape was compared at various developmental stages using three-dimensional (3D) geometric morphometric analysis and the growth rate of brain regions was evaluated to explore post-hatching morphological changes. Microscopic MRI (μMRI) was used to acquire in vivo data from living and post-mortem chicken brains. The telencephalon rotates caudoventrally during growth. This change in shape leads to a relative caudodorsal rotation of the cerebellum and myelencephalon. In addition, all brain regions elongate rostrocaudally and this leads to a more slender brain shape. The growth rates of each brain region were constant and the slopes from the growth formula were parallel. The dominant pattern of ontogenetic shape change corresponded with interspecific shape changes due to increasing brain size. That is, the interspecific and ontogenetic changes in brain shape due to increased size have similar patterns. Although the shape of the brain and each brain region changed considerably, the volume ratio of each brain region did not change. This suggests that the brain can change its shape after completing functional differentiation of the brain regions. Moreover, these results show that consideration of ontogenetic changes in brain shape is necessary for an accurate assessment of brain morphology in paleontological studies.
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Affiliation(s)
- Soichiro Kawabe
- Gifu Prefectural Museum, Gifu, Japan
- The University Museum, The University of Tokyo, Tokyo, Japan
- * E-mail:
| | - Seiji Matsuda
- Department of Anatomy and Embryology, School of Medicine, Ehime University, Ehime, Japan
| | - Naoki Tsunekawa
- Department of Veterinary Anatomy, The University of Tokyo, Tokyo, Japan
| | - Hideki Endo
- The University Museum, The University of Tokyo, Tokyo, Japan
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14
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Caro SP, Balthazart J, Bonadonna F. The perfume of reproduction in birds: chemosignaling in avian social life. Horm Behav 2015; 68:25-42. [PMID: 24928570 PMCID: PMC4263688 DOI: 10.1016/j.yhbeh.2014.06.001] [Citation(s) in RCA: 83] [Impact Index Per Article: 9.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 05/05/2014] [Revised: 06/02/2014] [Accepted: 06/03/2014] [Indexed: 11/23/2022]
Abstract
This article is part of a Special Issue "Chemosignals and Reproduction". Chemical cues were probably the first cues ever used to communicate and are still ubiquitous among living organisms. Birds have long been considered an exception: it was believed that birds were anosmic and relied on their acute visual and acoustic capabilities. Birds are however excellent smellers and use odors in various contexts including food searching, orientation, and also breeding. Successful reproduction in most vertebrates involves the exchange of complex social signals between partners. The first evidence for a role of olfaction in reproductive contexts in birds only dates back to the seventies, when ducks were shown to require a functional sense of smell to express normal sexual behaviors. Nowadays, even if the interest for olfaction in birds has largely increased, the role that bodily odors play in reproduction still remains largely understudied. The few available studies suggest that olfaction is involved in many reproductive stages. Odors have been shown to influence the choice and synchronization of partners, the choice of nest-building material or the care for the eggs and offspring. How this chemical information is translated at the physiological level mostly remains to be described, although available evidence suggests that, as in mammals, key reproductive brain areas like the medial preoptic nucleus are activated by relevant olfactory signals. Olfaction in birds receives increasing attention and novel findings are continuously published, but many exciting discoveries are still ahead of us, and could make birds one of the animal classes with the largest panel of developed senses ever described.
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Affiliation(s)
- Samuel P Caro
- Research Group in Behavioural Ecology, Department of Evolutionary Ecology, CEFE-CNRS (UMR 5175), Montpellier, France; Department of Animal Ecology, Netherlands Institute of Ecology (NIOO-KNAW), Wageningen, The Netherlands.
| | - Jacques Balthazart
- Research Group in Behavioral Neuroendocrinology, Center for Cellular and Molecular Neurobiology, University of Liège, Belgium
| | - Francesco Bonadonna
- Research Group in Behavioural Ecology, Department of Evolutionary Ecology, CEFE-CNRS (UMR 5175), Montpellier, France
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15
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Three-dimensional reconstructions come to life--interactive 3D PDF animations in functional morphology. PLoS One 2014; 9:e102355. [PMID: 25029366 PMCID: PMC4100761 DOI: 10.1371/journal.pone.0102355] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2014] [Accepted: 06/17/2014] [Indexed: 11/19/2022] Open
Abstract
Digital surface mesh models based on segmented datasets have become an integral part of studies on animal anatomy and functional morphology; usually, they are published as static images, movies or as interactive PDF files. We demonstrate the use of animated 3D models embedded in PDF documents, which combine the advantages of both movie and interactivity, based on the example of preserved Trigonopterus weevils. The method is particularly suitable to simulate joints with largely deterministic movements due to precise form closure. We illustrate the function of an individual screw-and-nut type hip joint and proceed to the complex movements of the entire insect attaining a defence position. This posture is achieved by a specific cascade of movements: Head and legs interlock mutually and with specific features of thorax and the first abdominal ventrite, presumably to increase the mechanical stability of the beetle and to maintain the defence position with minimal muscle activity. The deterministic interaction of accurately fitting body parts follows a defined sequence, which resembles a piece of engineering.
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16
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Kawabe S, Ando T, Endo H. Enigmatic affinity in the brain morphology between plotopterids and penguins, with a comprehensive comparison among water birds. Zool J Linn Soc 2013. [DOI: 10.1111/zoj.12072] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Soichiro Kawabe
- The University Museum; The University of Tokyo; Tokyo Japan
- Department of Biological Sciences, Graduate School of Science; The University of Tokyo; Tokyo Japan
- Gifu Prefectural Museum; Gifu Japan
| | | | - Hideki Endo
- The University Museum; The University of Tokyo; Tokyo Japan
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17
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Berquist RM, Gledhill KM, Peterson MW, Doan AH, Baxter GT, Yopak KE, Kang N, Walker HJ, Hastings PA, Frank LR. The Digital Fish Library: using MRI to digitize, database, and document the morphological diversity of fish. PLoS One 2012; 7:e34499. [PMID: 22493695 PMCID: PMC3321017 DOI: 10.1371/journal.pone.0034499] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2011] [Accepted: 03/02/2012] [Indexed: 01/01/2023] Open
Abstract
Museum fish collections possess a wealth of anatomical and morphological data that are essential for documenting and understanding biodiversity. Obtaining access to specimens for research, however, is not always practical and frequently conflicts with the need to maintain the physical integrity of specimens and the collection as a whole. Non-invasive three-dimensional (3D) digital imaging therefore serves a critical role in facilitating the digitization of these specimens for anatomical and morphological analysis as well as facilitating an efficient method for online storage and sharing of this imaging data. Here we describe the development of the Digital Fish Library (DFL, http://www.digitalfishlibrary.org), an online digital archive of high-resolution, high-contrast, magnetic resonance imaging (MRI) scans of the soft tissue anatomy of an array of fishes preserved in the Marine Vertebrate Collection of Scripps Institution of Oceanography. We have imaged and uploaded MRI data for over 300 marine and freshwater species, developed a data archival and retrieval system with a web-based image analysis and visualization tool, and integrated these into the public DFL website to disseminate data and associated metadata freely over the web. We show that MRI is a rapid and powerful method for accurately depicting the in-situ soft-tissue anatomy of preserved fishes in sufficient detail for large-scale comparative digital morphology. However these 3D volumetric data require a sophisticated computational and archival infrastructure in order to be broadly accessible to researchers and educators.
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Affiliation(s)
- Rachel M. Berquist
- Center for Scientific Computation in Imaging, University of California San Diego, La Jolla, California, United States of America
| | - Kristen M. Gledhill
- Center for Scientific Computation in Imaging, University of California San Diego, La Jolla, California, United States of America
| | - Matthew W. Peterson
- Center for Scientific Computation in Imaging, University of California San Diego, La Jolla, California, United States of America
| | - Allyson H. Doan
- Center for Scientific Computation in Imaging, University of California San Diego, La Jolla, California, United States of America
| | - Gregory T. Baxter
- Center for Scientific Computation in Imaging, University of California San Diego, La Jolla, California, United States of America
| | - Kara E. Yopak
- Center for Scientific Computation in Imaging, University of California San Diego, La Jolla, California, United States of America
| | - Ning Kang
- Center for Scientific Computation in Imaging, University of California San Diego, La Jolla, California, United States of America
| | - H. J. Walker
- Marine Vertebrate Collection and Marine Biology Research Division, Scripps Institution of Oceanography, University of California San Diego, La Jolla, California, United States of America
| | - Philip A. Hastings
- Marine Vertebrate Collection and Marine Biology Research Division, Scripps Institution of Oceanography, University of California San Diego, La Jolla, California, United States of America
| | - Lawrence R. Frank
- Center for Scientific Computation in Imaging, University of California San Diego, La Jolla, California, United States of America
- Center for Functional Magnetic Resonance Imaging, University of California San Diego, La Jolla, California, United States of America
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18
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Chanet B, Guintard C. Proposition for a protocol for anatomical studies on collection specimens by magnetic resonance imaging. C R Biol 2012; 335:77-9. [PMID: 22226166 DOI: 10.1016/j.crvi.2011.11.003] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2011] [Revised: 11/14/2011] [Accepted: 11/15/2011] [Indexed: 10/14/2022]
Abstract
Magnetic resonance imaging (MRI) examinations for anatomical studies on collection specimens are becoming more and more frequent. As the presence of metallic objects within the specimens can disturb the acquisition of images and damage both specimens and materials, a simple protocol using radiographs is here proposed to detect these objects in collection specimens before conducting an MRI examination.
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Affiliation(s)
- Bruno Chanet
- Équipe « Phylogénie », département systématique et évolution, Muséum national d'histoire naturelle, Paris cedex, France
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19
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Ziegler A, Kunth M, Mueller S, Bock C, Pohmann R, Schröder L, Faber C, Giribet G. Application of magnetic resonance imaging in zoology. ZOOMORPHOLOGY 2011. [DOI: 10.1007/s00435-011-0138-8] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/16/2022]
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20
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JOHNSTON PETER. New morphological evidence supports congruent phylogenies and Gondwana vicariance for palaeognathous birds. Zool J Linn Soc 2011. [DOI: 10.1111/j.1096-3642.2011.00730.x] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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21
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Iwaniuk AN. The importance of scientific collecting and natural history museums for comparative neuroanatomy. Ann N Y Acad Sci 2011; 1225 Suppl 1:E1-19. [PMID: 21599690 DOI: 10.1111/j.1749-6632.2011.05977.x] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The comparative study of vertebrate brains is inherently dependent upon access to a sufficient number of species and specimens to perform meaningful comparisons. Although many studies rely on compiling published information, continued specimen collection, in addition to more extensive use of existing brain collections and natural history museums, are crucial for detailed neuroanatomical comparisons across species. This review highlights the importance of collecting species through a variety of means, details a marsupial brain collection, and stresses the potential of natural history museums as a resource for comparative neuroanatomy. By taking advantage of as many of these resources as possible, researchers can rapidly increase species coverage and generate a better understanding of how the brain evolves.
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Affiliation(s)
- Andrew N Iwaniuk
- Department of Neuroscience, University of Lethbridge, Lethbridge, Alberta, Canada.
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22
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Ullmann JFP, Cowin G, Collin SP. Magnetic resonance microscopy of the barramundi (Lates calcarifer) brain. J Morphol 2011; 271:1446-56. [PMID: 20967831 DOI: 10.1002/jmor.10887] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
Magnetic resonance imaging (MRI) is an established technique for morphological imaging of the central nervous system. Despite its prevalent use in a range of taxa, few studies exist on the brains of teleosts. In this study, we present a detailed analysis of a teleost brain using high-resolution MRI. Images were acquired from a Bruker 16.4 T vertical magnet with a three-dimensional flash T(2)*-weighted image sequence. High contrast was obtained using Magnevist® and the following imaging parameters: a flip angle of 30°, a repetition time of 50 ms, an echo time of 14 ms, and an image matrix of 1024 × 400 × 400. The resulting isotropic resolution of 30 μm allowed us to thoroughly describe the architecture of the barramundi (Lates calcarifer) brain, including descriptions of nuclei, fiber tracts, and cellular layers. A good correspondence, both in contrast and morphology, was found between magnetic resonance images and Nissl-stained brain sections, allowing for an analysis of the benefits and drawbacks of MRI and conventional histology.
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Affiliation(s)
- Jeremy F P Ullmann
- Sensory Neurobiology Group, School of Biomedical Sciences, The University of Queensland, Brisbane 4072, Queensland, Australia.
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23
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Analysis of freshly fixed and museum invertebrate specimens using high-resolution, high-throughput MRI. Methods Mol Biol 2011; 771:633-51. [PMID: 21874501 DOI: 10.1007/978-1-61779-219-9_32] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/04/2022]
Abstract
Magnetic resonance imaging (MRI) is now considered a routine tool for comparative morphological imaging in small vertebrate model organisms. However, the application of high-resolution imaging protocols to visualize the anatomy of invertebrate organisms has not yet become a generally accepted tool among zoologists. Here, we describe MRI protocols that permit visualization of both the internal and the external anatomy of freshly fixed invertebrates and specimens from museum collections. The choice of protocols has been optimized to allow the assembly of the large numbers of datasets that are necessary for comparative morphological analyses. Although the primary focus of our work is on sea urchin internal anatomy, we also present results from a variety of other invertebrate taxa to demonstrate the principal feasibility of MRI studies to obtain anatomical information at high resolutions. Furthermore, we briefly describe procedures suitable for 3D modelling.
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24
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Ullmann JF, Cowin G, Collin SP. Quantitative Assessment of Brain Volumes in Fish: Comparison of Methodologies. BRAIN, BEHAVIOR AND EVOLUTION 2010; 76:261-70. [DOI: 10.1159/000321467] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/12/2010] [Accepted: 09/23/2010] [Indexed: 11/19/2022]
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25
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Ziegler A, Ogurreck M, Steinke T, Beckmann F, Prohaska S, Ziegler A. Opportunities and challenges for digital morphology. Biol Direct 2010; 5:45. [PMID: 20604956 PMCID: PMC2908069 DOI: 10.1186/1745-6150-5-45] [Citation(s) in RCA: 49] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2010] [Accepted: 07/06/2010] [Indexed: 12/21/2022] Open
Abstract
Advances in digital data acquisition, analysis, and storage have revolutionized the work in many biological disciplines such as genomics, molecular phylogenetics, and structural biology, but have not yet found satisfactory acceptance in morphology. Improvements in non-invasive imaging and three-dimensional visualization techniques, however, permit high-throughput analyses also of whole biological specimens, including museum material. These developments pave the way towards a digital era in morphology. Using sea urchins (Echinodermata: Echinoidea), we provide examples illustrating the power of these techniques. However, remote visualization, the creation of a specialized database, and the implementation of standardized, world-wide accepted data deposition practices prior to publication are essential to cope with the foreseeable exponential increase in digital morphological data.
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Affiliation(s)
- Alexander Ziegler
- Institut für Immungenetik, Charité-Universitätsmedizin Berlin, Campus Benjamin Franklin, Freie Universität Berlin, Thielallee 73, 14195 Berlin, Germany
| | - Malte Ogurreck
- GKSS-Forschungszentrum Geesthacht, Institut für Werkstoffforschung, Max-Planck-Strasse 1, 21502 Geesthacht, Germany
| | - Thomas Steinke
- Zuse Institute Berlin, Takustrasse 7, 14195 Berlin, Germany
| | - Felix Beckmann
- GKSS-Forschungszentrum Geesthacht, Institut für Werkstoffforschung, Max-Planck-Strasse 1, 21502 Geesthacht, Germany
| | | | - Andreas Ziegler
- Institut für Immungenetik, Charité-Universitätsmedizin Berlin, Campus Benjamin Franklin, Freie Universität Berlin, Thielallee 73, 14195 Berlin, Germany
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26
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Mietchen D, Gaser C. Computational morphometry for detecting changes in brain structure due to development, aging, learning, disease and evolution. Front Neuroinform 2009; 3:25. [PMID: 19707517 PMCID: PMC2729663 DOI: 10.3389/neuro.11.025.2009] [Citation(s) in RCA: 50] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2009] [Accepted: 07/09/2009] [Indexed: 01/14/2023] Open
Abstract
The brain, like any living tissue, is constantly changing in response to genetic and environmental cues and their interaction, leading to changes in brain function and structure, many of which are now in reach of neuroimaging techniques. Computational morphometry on the basis of Magnetic Resonance (MR) images has become the method of choice for studying macroscopic changes of brain structure across time scales. Thanks to computational advances and sophisticated study designs, both the minimal extent of change necessary for detection and, consequently, the minimal periods over which such changes can be detected have been reduced considerably during the last few years. On the other hand, the growing availability of MR images of more and more diverse brain populations also allows more detailed inferences about brain changes that occur over larger time scales, way beyond the duration of an average research project. On this basis, a whole range of issues concerning the structures and functions of the brain are now becoming addressable, thereby providing ample challenges and opportunities for further contributions from neuroinformatics to our understanding of the brain and how it changes over a lifetime and in the course of evolution.
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Affiliation(s)
- Daniel Mietchen
- Structural Brain Mapping Group, Department of Psychiatry, University of Jena D - 07743 Jena, Germany
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