1
|
Lu X, Jia Q, Zheng Y, Qin Z, Li Y, Shi C, Ma C. A novel method of droplet generation based on the self-propelling of water phase and its potential application in multiplexing continuous flow PCR. Biosens Bioelectron 2025; 279:117400. [PMID: 40157152 DOI: 10.1016/j.bios.2025.117400] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/25/2024] [Revised: 03/11/2025] [Accepted: 03/18/2025] [Indexed: 04/01/2025]
Abstract
Despite the benefits of microfluidic continuous flow PCR (CF-PCR) such as simplified thermal management and expedited heat transfer, challenge remains in processing multiple targets by CF-PCR, particularly regarding spatial multiplexing. The segregation of the target sample into droplets as isolated reactors is an effective method for achieving spatial multiplexing. Nevertheless, conventional techniques for droplet generation necessitate the management of both oil and water phases, thereby augmenting the complexity of channel design and device operation, particularly when parallel channels were needed for manipulating multiple targets. This study presented an innovative technique for droplet formation employing the self-propelling of the aqueous phase through the principles of Laplace pressure and utilizing a time order of fluid loading instead of simultaneous management of fluids. As a result, only a singular type of fluid was necessary for manipulation at one time, thereby streamlining chip design, device configuration, and operations. Spatial multiplexing droplets were generated by multiple microstructures with both functions of the segmentation of the sample target solution and droplet generation. In this study, four types of droplets generated from restoring the preloaded specific primers by target solution with PCR mix completed CF-PCR amplification via the serpentine channel in 10 min. Utilizing the idea of self-propelling of the aqueous phase, this study demonstrated an alternative method for droplet generation and significant promise for a simple way to achieve spatial multiplexing in CF-PCR when detecting multiple targets.
Collapse
Affiliation(s)
- Xiaoguang Lu
- Shandong Provincial Key Laboratory of Biochemical Engineering, Qingdao Nucleic Acid Rapid Detection Engineering Research Center, Qingdao Key Laboratory of Nucleic Acid Rapid Detection, Sino-UAE International Cooperative Joint Laboratory of Pathogenic Microorganism Rapid Detection, College of Biological Engineering, Qingdao University of Science and Technology, Qingdao, 266042, China
| | - Qianyue Jia
- Shandong Provincial Key Laboratory of Biochemical Engineering, Qingdao Nucleic Acid Rapid Detection Engineering Research Center, Qingdao Key Laboratory of Nucleic Acid Rapid Detection, Sino-UAE International Cooperative Joint Laboratory of Pathogenic Microorganism Rapid Detection, College of Biological Engineering, Qingdao University of Science and Technology, Qingdao, 266042, China
| | - Yaning Zheng
- Shandong Provincial Key Laboratory of Biochemical Engineering, Qingdao Nucleic Acid Rapid Detection Engineering Research Center, Qingdao Key Laboratory of Nucleic Acid Rapid Detection, Sino-UAE International Cooperative Joint Laboratory of Pathogenic Microorganism Rapid Detection, College of Biological Engineering, Qingdao University of Science and Technology, Qingdao, 266042, China
| | - Zishan Qin
- Shandong Provincial Key Laboratory of Biochemical Engineering, Qingdao Nucleic Acid Rapid Detection Engineering Research Center, Qingdao Key Laboratory of Nucleic Acid Rapid Detection, Sino-UAE International Cooperative Joint Laboratory of Pathogenic Microorganism Rapid Detection, College of Biological Engineering, Qingdao University of Science and Technology, Qingdao, 266042, China
| | - Yong Li
- Shandong Provincial Key Laboratory of Biochemical Engineering, Qingdao Nucleic Acid Rapid Detection Engineering Research Center, Qingdao Key Laboratory of Nucleic Acid Rapid Detection, Sino-UAE International Cooperative Joint Laboratory of Pathogenic Microorganism Rapid Detection, College of Biological Engineering, Qingdao University of Science and Technology, Qingdao, 266042, China
| | - Chao Shi
- Qingdao Nucleic Acid Rapid Testing International Science and Technology Cooperation Base, The Affiliated Hospital of Qingdao University, College of Life Sciences, Qingdao University, Qingdao, 266071, China
| | - Cuiping Ma
- Shandong Provincial Key Laboratory of Biochemical Engineering, Qingdao Nucleic Acid Rapid Detection Engineering Research Center, Qingdao Key Laboratory of Nucleic Acid Rapid Detection, Sino-UAE International Cooperative Joint Laboratory of Pathogenic Microorganism Rapid Detection, College of Biological Engineering, Qingdao University of Science and Technology, Qingdao, 266042, China.
| |
Collapse
|
2
|
Röntgen A, Toprakcioglu Z, Dada ST, Morris OM, Knowles TPJ, Vendruscolo M. Aggregation of α-synuclein splice isoforms through a phase separation pathway. SCIENCE ADVANCES 2025; 11:eadq5396. [PMID: 40238878 PMCID: PMC12002138 DOI: 10.1126/sciadv.adq5396] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/19/2024] [Accepted: 03/09/2025] [Indexed: 04/18/2025]
Abstract
The aggregation of α-synuclein (αSyn) is associated with Parkinson's disease and other related synucleinopathies. Considerable efforts have thus been directed at understanding this process. However, the recently discovered condensation pathway, which involves the formation of phase-separated liquid intermediate states, has added further complexity. In parallel, it has been reported that different αSyn splice isoforms may be implicated in aggregate formation in disease. In this study, we compare the phase behavior of four αSyn isoforms (αSyn-140, αSyn-126, αSyn-112, and αSyn-98). Using different biophysical tools including confocal microscopy, kinetic assays and microfluidic-based approaches, we find stark differences between the four systems in their propensities to undergo phase separation and aggregation. Furthermore, we show that even small amounts of αSyn-112, one of the predominant isoforms after αSyn-140, can affect the phase separation of αSyn-140. These results highlight the importance of conducting further investigations to elucidate the role of alternative splicing in synucleinopathies.
Collapse
Affiliation(s)
- Alexander Röntgen
- Centre for Misfolding Diseases, Yusuf Hamied Department of Chemistry, University of Cambridge, Cambridge CB2 1EW, UK
| | - Zenon Toprakcioglu
- Centre for Misfolding Diseases, Yusuf Hamied Department of Chemistry, University of Cambridge, Cambridge CB2 1EW, UK
| | - Samuel T. Dada
- Centre for Misfolding Diseases, Yusuf Hamied Department of Chemistry, University of Cambridge, Cambridge CB2 1EW, UK
| | - Owen M. Morris
- Centre for Misfolding Diseases, Yusuf Hamied Department of Chemistry, University of Cambridge, Cambridge CB2 1EW, UK
| | - Tuomas P. J. Knowles
- Centre for Misfolding Diseases, Yusuf Hamied Department of Chemistry, University of Cambridge, Cambridge CB2 1EW, UK
| | - Michele Vendruscolo
- Centre for Misfolding Diseases, Yusuf Hamied Department of Chemistry, University of Cambridge, Cambridge CB2 1EW, UK
| |
Collapse
|
3
|
Morris OM, Toprakcioglu Z, Röntgen A, Cali M, Knowles TPJ, Vendruscolo M. Aggregation of the amyloid-β peptide (Aβ40) within condensates generated through liquid-liquid phase separation. Sci Rep 2024; 14:22633. [PMID: 39349560 PMCID: PMC11442885 DOI: 10.1038/s41598-024-72265-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2024] [Accepted: 09/05/2024] [Indexed: 10/02/2024] Open
Abstract
The deposition of the amyloid-β (Aβ) peptide into amyloid fibrils is a hallmark of Alzheimer's disease. Recently, it has been reported that some proteins can aggregate and form amyloids through an intermediate pathway involving a liquid-like condensed phase. These observations prompted us to investigate the phase space of Aβ. We thus explored the ability of Aβ to undergo liquid-liquid phase separation, and the subsequent liquid-to-solid transition that takes place within the resulting condensates. Through the use of microfluidic approaches, we observed that the 40-residue form of Αβ (Αβ40) can undergo liquid-liquid phase separation, and that accessing a liquid-like intermediate state enables Αβ40 to self-assemble and aggregate into amyloid fibrils through this pathway. These results prompt further studies to investigate the possible role of Αβ liquid-liquid phase separation and its subsequent aggregation in the context of Alzheimer's disease and more generally on neurodegenerative processes.
Collapse
Affiliation(s)
- Owen M Morris
- Centre for Misfolding Diseases, Yusuf Hamied Department of Chemistry, University of Cambridge, Cambridge, CB2 1EW, UK
| | - Zenon Toprakcioglu
- Centre for Misfolding Diseases, Yusuf Hamied Department of Chemistry, University of Cambridge, Cambridge, CB2 1EW, UK
| | - Alexander Röntgen
- Centre for Misfolding Diseases, Yusuf Hamied Department of Chemistry, University of Cambridge, Cambridge, CB2 1EW, UK
| | - Mariana Cali
- Centre for Misfolding Diseases, Yusuf Hamied Department of Chemistry, University of Cambridge, Cambridge, CB2 1EW, UK
| | - Tuomas P J Knowles
- Centre for Misfolding Diseases, Yusuf Hamied Department of Chemistry, University of Cambridge, Cambridge, CB2 1EW, UK
- Cavendish Laboratory, Department of Physics, University of Cambridge, Cambridge, CB3 OHE, UK
| | - Michele Vendruscolo
- Centre for Misfolding Diseases, Yusuf Hamied Department of Chemistry, University of Cambridge, Cambridge, CB2 1EW, UK.
| |
Collapse
|
4
|
Fedorets AA, Dombrovsky LA, Bormashenko E, Frenkel M, Nosonovsky M. Inverse Phase Transition in Droplet Clusters Levitating over the Locally Heated Water Layer. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2024; 40:17331-17336. [PMID: 39120007 DOI: 10.1021/acs.langmuir.4c01419] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 08/10/2024]
Abstract
Self-assembled microdroplet clusters can levitate above a locally heated water surface. Normally, the temperature of droplets is in the range of 50-95 °C. However, it is possible to generate clusters at lower temperatures. Here, we study the structure and behavior of such cold-stabilized droplet clusters with variable temperature. It has been established that as the temperature decreases, the role of aerodynamic forces decreases, while electrostatic forces, on the contrary, increase. We studied the behavior of droplet clusters at relatively low temperatures down to 28 °C. A chaotic motion of droplets and a phase transition were observed at the surface temperature of the water below a critical value of about Tmax = 35 ± 2 °C. The orderliness of the cluster was quantified with the Shannon/Voronoi entropy. Several stages of cluster evolution were observed and analyzed, and a mechanism of this phenomenon is discussed. An inverse phase transition in which cooling of the cluster decreases its orderliness is discussed. Frequencies of the droplets' oscillations coincide qualitatively with the frequency of the plasma oscillations within the cluster.
Collapse
Affiliation(s)
- Alexander A Fedorets
- X-BIO Institute, University of Tyumen, 6 Volodarskogo St., Tyumen 625003, Russia
| | - Leonid A Dombrovsky
- X-BIO Institute, University of Tyumen, 6 Volodarskogo St., Tyumen 625003, Russia
- Heat Transfer Department, Joint Institute for High Temperatures, 17A Krasnokazarmennaya St., Moscow 111116, Russia
- Department of Chemical Engineering, Faculty of Engineering, Ariel University, Ariel 407000, Israel
| | - Edward Bormashenko
- Department of Chemical Engineering, Faculty of Engineering, Ariel University, Ariel 407000, Israel
| | - Mark Frenkel
- Department of Chemical Engineering, Faculty of Engineering, Ariel University, Ariel 407000, Israel
| | - Michael Nosonovsky
- X-BIO Institute, University of Tyumen, 6 Volodarskogo St., Tyumen 625003, Russia
- Department of Chemical Engineering, Faculty of Engineering, Ariel University, Ariel 407000, Israel
- Department of Mechanical Engineering, University of Wisconsin─Milwaukee, 3200 North Cramer St., Milwaukee, Wisconsin 53211, United States
| |
Collapse
|
5
|
Fedorets AA, Kolmakov EE, Dombrovsky LA, Nosonovsky M. Inversion of Stabilized Large Droplet Clusters. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2024; 40:9993-9998. [PMID: 38688005 DOI: 10.1021/acs.langmuir.4c00138] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/02/2024]
Abstract
We investigate the spontaneous rearrangement of microdroplets in a self-assembled droplet cluster levitating over a thin locally heated water layer. The center-to-periphery droplet diameter ratio (the "inversion coefficient") controls the onset of the inversion. Larger droplets can squeeze between smaller ones due to increased drag force on them from the air-vapor flow. In smaller clusters, the rotation of the droplets plays an important role since larger droplets rotating with the same angular velocity (dependent on the rotor of the airflow field) have higher viscous friction force with the liquid layer. It is desirable to avoid cluster inversion in experiments where individual droplet positions should be traced.
Collapse
Affiliation(s)
- Alexander A Fedorets
- X-BIO Institute, University of Tyumen, 6 Volodarskogo St., Tyumen 625003, Russia
| | - Eduard E Kolmakov
- X-BIO Institute, University of Tyumen, 6 Volodarskogo St., Tyumen 625003, Russia
| | - Leonid A Dombrovsky
- X-BIO Institute, University of Tyumen, 6 Volodarskogo St., Tyumen 625003, Russia
- Joint Institute for High Temperatures, 17A Krasnokazarmennaya St., Moscow 111116, Russia
| | - Michael Nosonovsky
- X-BIO Institute, University of Tyumen, 6 Volodarskogo St., Tyumen 625003, Russia
- Mechanical Engineering, University of Wisconsin─Milwaukee, 3200 North Cramer St., Milwaukee, Wisconsin 53211, United States
| |
Collapse
|
6
|
Dada ST, Toprakcioglu Z, Cali MP, Röntgen A, Hardenberg MC, Morris OM, Mrugalla LK, Knowles TPJ, Vendruscolo M. Pharmacological inhibition of α-synuclein aggregation within liquid condensates. Nat Commun 2024; 15:3835. [PMID: 38714700 PMCID: PMC11076612 DOI: 10.1038/s41467-024-47585-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2023] [Accepted: 04/03/2024] [Indexed: 05/10/2024] Open
Abstract
Aggregated forms of α-synuclein constitute the major component of Lewy bodies, the proteinaceous aggregates characteristic of Parkinson's disease. Emerging evidence suggests that α-synuclein aggregation may occur within liquid condensates formed through phase separation. This mechanism of aggregation creates new challenges and opportunities for drug discovery for Parkinson's disease, which is otherwise still incurable. Here we show that the condensation-driven aggregation pathway of α-synuclein can be inhibited using small molecules. We report that the aminosterol claramine stabilizes α-synuclein condensates and inhibits α-synuclein aggregation within the condensates both in vitro and in a Caenorhabditis elegans model of Parkinson's disease. By using a chemical kinetics approach, we show that the mechanism of action of claramine is to inhibit primary nucleation within the condensates. These results illustrate a possible therapeutic route based on the inhibition of protein aggregation within condensates, a phenomenon likely to be relevant in other neurodegenerative disorders.
Collapse
Affiliation(s)
- Samuel T Dada
- Department of Chemistry, Centre for Misfolding Disease, University of Cambridge, Cambridge, CB2 1EW, UK
| | - Zenon Toprakcioglu
- Department of Chemistry, Centre for Misfolding Disease, University of Cambridge, Cambridge, CB2 1EW, UK
| | - Mariana P Cali
- Department of Chemistry, Centre for Misfolding Disease, University of Cambridge, Cambridge, CB2 1EW, UK
| | - Alexander Röntgen
- Department of Chemistry, Centre for Misfolding Disease, University of Cambridge, Cambridge, CB2 1EW, UK
| | - Maarten C Hardenberg
- Department of Chemistry, Centre for Misfolding Disease, University of Cambridge, Cambridge, CB2 1EW, UK
| | - Owen M Morris
- Department of Chemistry, Centre for Misfolding Disease, University of Cambridge, Cambridge, CB2 1EW, UK
| | - Lena K Mrugalla
- Department of Chemistry, Centre for Misfolding Disease, University of Cambridge, Cambridge, CB2 1EW, UK
| | - Tuomas P J Knowles
- Department of Chemistry, Centre for Misfolding Disease, University of Cambridge, Cambridge, CB2 1EW, UK
| | - Michele Vendruscolo
- Department of Chemistry, Centre for Misfolding Disease, University of Cambridge, Cambridge, CB2 1EW, UK.
| |
Collapse
|
7
|
Harriot J, Yeh M, Pabba M, DeVoe DL. Programmable Control of Nanoliter Droplet Arrays using Membrane Displacement Traps. ADVANCED MATERIALS TECHNOLOGIES 2023; 8:2300963. [PMID: 38495529 PMCID: PMC10939115 DOI: 10.1002/admt.202300963] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/13/2023] [Indexed: 03/19/2024]
Abstract
A unique droplet microfluidic technology enabling programmable deterministic control over complex droplet operations is presented. The platform provides software control over user-defined combinations of droplet generation, capture, ejection, sorting, splitting, and merging sequences to enable the design of flexible assays employing nanoliter-scale fluid volumes. The system integrates a computer vision system with an array of membrane displacement traps capable of performing selected unit operations with automated feedback control. Sequences of individual droplet handling steps are defined through a robust Python-based scripting language. Bidirectional flow control within the microfluidic chips is provided using an H-bridge channel topology, allowing droplets to be transported to arbitrary trap locations within the array for increased operational flexibility. By enabling automated software control over all droplet operations, the system significantly expands the potential of droplet microfluidics for diverse biological and biochemical applications by combining the functionality of robotic liquid handling with the advantages of droplet-based fluid manipulation.
Collapse
Affiliation(s)
- Jason Harriot
- Department of Mechanical Engineering, University of Maryland, College Park, MD 20742
- Fishell Institute for Biomedical Devices, University of Maryland, College Park, MD 20742
| | - Michael Yeh
- Department of Mechanical Engineering, University of Maryland, College Park, MD 20742
- Fishell Institute for Biomedical Devices, University of Maryland, College Park, MD 20742
| | - Mani Pabba
- Department of Computer Science, University of Maryland, College Park, MD 20742
| | - Don L. DeVoe
- Department of Mechanical Engineering, University of Maryland, College Park, MD 20742
- Fishell Institute for Biomedical Devices, University of Maryland, College Park, MD 20742
| |
Collapse
|
8
|
Shijo S, Tanaka D, Sekiguchi T, Ishihara JI, Takahashi H, Kobayashi M, Shoji S. Dielectrophoresis-Based Selective Droplet Extraction Microfluidic Device for Single-Cell Analysis. MICROMACHINES 2023; 14:706. [PMID: 36985113 PMCID: PMC10058699 DOI: 10.3390/mi14030706] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/14/2023] [Revised: 03/18/2023] [Accepted: 03/20/2023] [Indexed: 06/18/2023]
Abstract
We developed a microfluidic device that enables selective droplet extraction from multiple droplet-trapping pockets based on dielectrophoresis. The device consists of a main microchannel, five droplet-trapping pockets with side channels, and drive electrode pairs appropriately located around the trapping pockets. Agarose droplets capable of encapsulating biological samples were successfully trapped in the trapping pockets due to the difference in flow resistance between the main and side channels. Target droplets were selectively extracted from the pockets by the dielectrophoretic force generated between the electrodes under an applied voltage of 500 V. During their extraction from the trapping pockets, the droplets and their contents were exposed to an electric field for 400-800 ms. To evaluate whether the applied voltage could potentially damage the biological samples, the growth rates of Escherichia coli cells in the droplets, with and without a voltage applied, were compared. No significant difference in the growth rate was observed. The developed device enables the screening of encapsulated single cells and the selective extraction of target droplets.
Collapse
Affiliation(s)
- Seito Shijo
- Major in Nanoscience and Nanoengineering, Waseda University, 3-4-1 Okubo, Shinjuku, Tokyo 145-0065, Japan; (M.K.)
| | - Daiki Tanaka
- Research Organization for Nano & Life Innovation, Waseda University, 513 Tsurumakicho, Shinjuku, Tokyo 162-0041, Japan
| | - Tetsushi Sekiguchi
- Research Organization for Nano & Life Innovation, Waseda University, 513 Tsurumakicho, Shinjuku, Tokyo 162-0041, Japan
| | - Jun-ichi Ishihara
- Medical Mycology Research Center, Chiba University, 181 Inohana, Chuo, Chiba 260-8673, Japan
| | - Hiroki Takahashi
- Medical Mycology Research Center, Chiba University, 181 Inohana, Chuo, Chiba 260-8673, Japan
- Molecular Chirality Research Center, Chiba University, 1-33 Yayoi-cho, Inage-ku, Chiba 263-8522, Japan
- Plant Molecular Science Center, Chiba University, 181 Inohana, Chuo, Chiba 260-8673, Japan
| | - Masashi Kobayashi
- Major in Nanoscience and Nanoengineering, Waseda University, 3-4-1 Okubo, Shinjuku, Tokyo 145-0065, Japan; (M.K.)
| | - Shuichi Shoji
- Major in Nanoscience and Nanoengineering, Waseda University, 3-4-1 Okubo, Shinjuku, Tokyo 145-0065, Japan; (M.K.)
| |
Collapse
|