1
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Wood RA, Droser ML. The evolution of reproduction in Ediacaran-Cambrian metazoans. Biol Rev Camb Philos Soc 2025. [PMID: 40374304 DOI: 10.1111/brv.70036] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2024] [Revised: 05/01/2025] [Accepted: 05/07/2025] [Indexed: 05/17/2025]
Abstract
The evolution of reproductive style is a fundamental aspect of metazoan life history but has not been explored holistically through the Ediacaran-Cambrian rise of metazoans. Recent molecular clock analyses based on only unequivocal metazoan fossil calibrations suggest that Porifera were present by at least 590 million years ago (Ma), all major eumetazoan clades originated in the mid-late Ediacaran, and bilaterians were probably present by the late Ediacaran. An alternating pelagic larval (potentially for dispersal) and benthic adult life cycle appears to be an ancestral feature of metazoans. A compilation of inferred reproductive styles from the fossil record reveals that the low-competition, deep-water communities of the Ediacaran Avalon macrofossil assemblage (ca. 575 to 560 Ma) had current-borne sexually produced larval with both local (non-planktotrophic, with no feeding) and more widespread (planktotrophic, with feeding) dispersal followed by vegetative growth. By ca. 560 Ma, White Sea assemblage communities in shallow settings show dense aggregations, which were often dominated by single populations of episodic sexually produced larval spatfalls. Some taxa may show potential larval philopatry. By 550 Ma, with the rise of biomineralization and colonisation of shallow marine carbonate settings, the ability to encrust hard substrates, create multiple branches via budding, and rudimentary mutual attachment of inferred clones, first appear. The dominant apparent mode of reproduction throughout the Ediacaran was therefore via current-borne sexually produced larvae followed by asexual reproduction, via either budding, fragmentation or fission. In these communities where biotic interactions were limited, this enabled colonisation of newly available soft and hard substrates followed by rapid growth. Early Cambrian communities showed increased endemism, enhanced trophic interactions and widespread macropredation. By the early Cambrian Fortunian stage (ca. 535 Ma), gonochorism (separate sexes) may have been present in priapulid worms. During Cambrian Stage 2 (ca. 532 Ma), internal fertilisation probably appeared in molluscs but widespread planktotrophy did not appear until the latest Cambrian/early Ordovician. Mutual attachment of diverse skeletal taxa became more common, particularly within reefs. Evidence for egg brooding and parental care in arthropods had appeared by the early Stage 3 (ca. 518 Ma). While reproductive styles were independently acquired, this overall pattern suggests a shift both to higher fecundity and to higher quality offspring in some groups during the Ediacaran-Cambrian Radiation, driven by increasing biotic interactions, including the rise of macropredation.
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Affiliation(s)
- Rachel A Wood
- School of Geosciences, University of Edinburgh, James Hutton Road, Edinburgh, EH9 3FE, UK
| | - Mary L Droser
- Department of Earth and Planetary Science, University of California, Riverside, California, 92521, USA
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2
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Craffey M, Wagner PJ, Watkins DK, Darroch SAF, Lyons SK. Co-occurrence structure of late Ediacaran communities and influence of emerging ecosystem engineers. Proc Biol Sci 2024; 291:20242029. [PMID: 39657805 PMCID: PMC11631414 DOI: 10.1098/rspb.2024.2029] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2024] [Revised: 10/31/2024] [Accepted: 11/12/2024] [Indexed: 12/12/2024] Open
Abstract
Understanding the roles of habitat filtering, dispersal limitations and biotic interactions in shaping the organization of animal communities is a central research goal in ecology. Attempts to extend these approaches into deep time have the potential to illuminate the role of these processes over key intervals in evolutionary history. The Ediacaran marks one such interval, recording the first macroscopic benthic communities and a stepwise intensification in animal ecosystem engineering. Here, we use taxonomic co-occurrence analysis to evaluate how community structure shifted through the late Ediacaran and the role of different community assembly processes in driving these changes. We find that community structure shifted significantly throughout the Ediacaran, with the most dramatic shift occurring at the White Sea-Nama boundary (approx. 550 Ma) characterized by a split between older, more enigmatic taxonomic groups (the 'Ediacara-type' fauna) and more recognizable ('Cambrian-type') metazoans. While ecosystem engineering via bioturbation is implicated in this shift, dispersal limitations also played apart in separating biota types. We hypothesize that bioturbation acted as a local habitat filter in the late Ediacaran, selecting against genera adapted to microbial mat ecosystems. Ecosystem engineering regime shifts in the Ediacaran may thus have had a large impact on the development of subsequent metazoan communities.
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Affiliation(s)
- M. Craffey
- School of Biological Sciences, Manter Hall 402, University of Nebraska, Lincoln, NE68588, USA
| | - P. J. Wagner
- Department of Earth and Atmospheric Sciences, 126 Bessey Hall, University of Nebraska, Lincoln, NE68588, USA
| | - David K. Watkins
- Department of Earth and Atmospheric Sciences, 126 Bessey Hall, University of Nebraska, Lincoln, NE68588, USA
| | - S. A. F Darroch
- Senckenberg Museum of Natural History, Frankfurt60325, Germany
| | - S. K. Lyons
- School of Biological Sciences, Manter Hall 402, University of Nebraska, Lincoln, NE68588, USA
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3
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Zhao T, Wang S, Ouyang C, Chen M, Liu C, Zhang J, Yu L, Wang F, Xie Y, Li J, Wang F, Grunwald S, Wong BM, Zhang F, Qian Z, Xu Y, Yu C, Han W, Sun T, Shao Z, Qian T, Chen Z, Zeng J, Zhang H, Letu H, Zhang B, Wang L, Luo L, Shi C, Su H, Zhang H, Yin S, Huang N, Zhao W, Li N, Zheng C, Zhou Y, Huang C, Feng D, Xu Q, Wu Y, Hong D, Wang Z, Lin Y, Zhang T, Kumar P, Plaza A, Chanussot J, Zhang J, Shi J, Wang L. Artificial intelligence for geoscience: Progress, challenges, and perspectives. Innovation (N Y) 2024; 5:100691. [PMID: 39285902 PMCID: PMC11404188 DOI: 10.1016/j.xinn.2024.100691] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2024] [Accepted: 08/17/2024] [Indexed: 09/19/2024] Open
Abstract
This paper explores the evolution of geoscientific inquiry, tracing the progression from traditional physics-based models to modern data-driven approaches facilitated by significant advancements in artificial intelligence (AI) and data collection techniques. Traditional models, which are grounded in physical and numerical frameworks, provide robust explanations by explicitly reconstructing underlying physical processes. However, their limitations in comprehensively capturing Earth's complexities and uncertainties pose challenges in optimization and real-world applicability. In contrast, contemporary data-driven models, particularly those utilizing machine learning (ML) and deep learning (DL), leverage extensive geoscience data to glean insights without requiring exhaustive theoretical knowledge. ML techniques have shown promise in addressing Earth science-related questions. Nevertheless, challenges such as data scarcity, computational demands, data privacy concerns, and the "black-box" nature of AI models hinder their seamless integration into geoscience. The integration of physics-based and data-driven methodologies into hybrid models presents an alternative paradigm. These models, which incorporate domain knowledge to guide AI methodologies, demonstrate enhanced efficiency and performance with reduced training data requirements. This review provides a comprehensive overview of geoscientific research paradigms, emphasizing untapped opportunities at the intersection of advanced AI techniques and geoscience. It examines major methodologies, showcases advances in large-scale models, and discusses the challenges and prospects that will shape the future landscape of AI in geoscience. The paper outlines a dynamic field ripe with possibilities, poised to unlock new understandings of Earth's complexities and further advance geoscience exploration.
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Affiliation(s)
- Tianjie Zhao
- Aerospace Information Research Institute, Chinese Academy of Sciences, Beijing 100094, China
| | - Sheng Wang
- School of Computer Science, China University of Geosciences, Wuhan 430078, China
| | - Chaojun Ouyang
- State Key Laboratory of Mountain Hazards and Engineering Resilience, Institute of Mountain Hazards and Environment, Chinese Academy of Sciences, Chengdu 610299, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Min Chen
- Key Laboratory of Virtual Geographic Environment (Ministry of Education of PRC), Nanjing Normal University, Nanjing 210023, China
| | - Chenying Liu
- Data Science in Earth Observation, Technical University of Munich, 80333 Munich, Germany
| | - Jin Zhang
- The National Key Laboratory of Water Disaster Prevention, Yangtze Institute for Conservation and Development, Hohai University, Nanjing 210098, China
| | - Long Yu
- School of Computer Science, China University of Geosciences, Wuhan 430078, China
| | - Fei Wang
- Institute of Computing Technology, Chinese Academy of Sciences, Beijing 100190, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Yong Xie
- School of Geographical Sciences, Nanjing University of Information Science and Technology, Nanjing 210044, China
| | - Jun Li
- School of Computer Science, China University of Geosciences, Wuhan 430078, China
| | - Fang Wang
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China
- University of Chinese Academy of Sciences, Beijing 100049, China
- Department of Chemistry, Technical University of Munich, 85748 Munich, Germany
| | - Sabine Grunwald
- Soil, Water and Ecosystem Sciences Department, University of Florida, PO Box 110290, Gainesville, FL, USA
| | - Bryan M Wong
- Materials Science Engineering Program Cooperating Faculty Member in the Department of Chemistry and Department of Physics Astronomy, University of California, California, Riverside, CA 92521, USA
| | - Fan Zhang
- Institute of Remote Sensing and Geographical Information System, School of Earth and Space Sciences, Peking University, Beijing 100871, China
| | - Zhen Qian
- Key Laboratory of Virtual Geographic Environment (Ministry of Education of PRC), Nanjing Normal University, Nanjing 210023, China
| | - Yongjun Xu
- Institute of Computing Technology, Chinese Academy of Sciences, Beijing 100190, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Chengqing Yu
- Institute of Computing Technology, Chinese Academy of Sciences, Beijing 100190, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Wei Han
- School of Computer Science, China University of Geosciences, Wuhan 430078, China
| | - Tao Sun
- Institute of Computing Technology, Chinese Academy of Sciences, Beijing 100190, China
| | - Zezhi Shao
- Institute of Computing Technology, Chinese Academy of Sciences, Beijing 100190, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Tangwen Qian
- Institute of Computing Technology, Chinese Academy of Sciences, Beijing 100190, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Zhao Chen
- Institute of Computing Technology, Chinese Academy of Sciences, Beijing 100190, China
| | - Jiangyuan Zeng
- Aerospace Information Research Institute, Chinese Academy of Sciences, Beijing 100094, China
| | - Huai Zhang
- Key Laboratory of Computational Geodynamics, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Husi Letu
- Aerospace Information Research Institute, Chinese Academy of Sciences, Beijing 100094, China
| | - Bing Zhang
- Aerospace Information Research Institute, Chinese Academy of Sciences, Beijing 100094, China
| | - Li Wang
- Aerospace Information Research Institute, Chinese Academy of Sciences, Beijing 100094, China
| | - Lei Luo
- International Research Center of Big Data for Sustainable Development Goals, Beijing 100094, China
| | - Chong Shi
- Aerospace Information Research Institute, Chinese Academy of Sciences, Beijing 100094, China
| | - Hongjun Su
- College of Geography and Remote Sensing, Hohai University, Nanjing 211100, China
| | - Hongsheng Zhang
- Department of Geography, The University of Hong Kong, Hong Kong 999077, SAR, China
| | - Shuai Yin
- Aerospace Information Research Institute, Chinese Academy of Sciences, Beijing 100094, China
| | - Ni Huang
- Aerospace Information Research Institute, Chinese Academy of Sciences, Beijing 100094, China
| | - Wei Zhao
- Aerospace Information Research Institute, Chinese Academy of Sciences, Beijing 100094, China
| | - Nan Li
- Jiangsu Key Laboratory of Atmospheric Environment Monitoring and Pollution Control, Nanjing 210044, China
- School of Environmental Science and Engineering, Nanjing University of Information Science & Technology, Nanjing 210044, China
| | - Chaolei Zheng
- Aerospace Information Research Institute, Chinese Academy of Sciences, Beijing 100094, China
| | - Yang Zhou
- Collaborative Innovation Center on Forecast and Evaluation of Meteorological Disasters, Key Laboratory of Meteorological Disaster, Ministry of Education, Nanjing University of Information Science and Technology, Nanjing 210044, China
| | - Changping Huang
- Aerospace Information Research Institute, Chinese Academy of Sciences, Beijing 100094, China
| | - Defeng Feng
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Qingsong Xu
- Data Science in Earth Observation, Technical University of Munich, 80333 Munich, Germany
| | - Yan Wu
- Key Laboratory of Vertebrate Evolution and Human Origins of Chinese Academy of Sciences, Institute of Vertebrate Paleontology and Paleoanthropology, Chinese Academy of Sciences, Beijing 100044, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Danfeng Hong
- Aerospace Information Research Institute, Chinese Academy of Sciences, Beijing 100094, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Zhenyu Wang
- Department of Catchment Hydrology, Helmholtz Centre for Environmental Research - UFZ, Halle (Saale) 06108, Germany
| | - Yinyi Lin
- Department of Geography, The University of Hong Kong, Hong Kong 999077, SAR, China
| | - Tangtang Zhang
- Key Laboratory of Land Surface Process and Climate Change in Cold and Arid Regions, Chinese Academy of Sciences, Lanzhou 730000, China
| | - Prashant Kumar
- Global Centre for Clean Air Research (GCARE), School of Sustainability, Civil and Environmental Engineering, Faculty of Engineering and Physical Sciences, University of Surrey, Guildford GU2 7XH, UK
- Institute for Sustainability, University of Surrey, Guildford GU2 7XH, Surrey, UK
| | - Antonio Plaza
- Hyperspectral Computing Laboratory, University of Extremadura, 10003 Caceres, Spain
| | - Jocelyn Chanussot
- University Grenoble Alpes, Inria, CNRS, Grenoble INP, LJK, 38000 Grenoble, France
| | - Jiabao Zhang
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Jiancheng Shi
- National Space Science Center, Chinese Academy of Sciences, Beijing 100190, China
| | - Lizhe Wang
- School of Computer Science, China University of Geosciences, Wuhan 430078, China
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4
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Bowyer FT, Wood RA, Yilales M. Sea level controls on Ediacaran-Cambrian animal radiations. SCIENCE ADVANCES 2024; 10:eado6462. [PMID: 39083611 PMCID: PMC11290527 DOI: 10.1126/sciadv.ado6462] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/13/2024] [Accepted: 06/25/2024] [Indexed: 08/02/2024]
Abstract
The drivers of Ediacaran-Cambrian metazoan radiations remain unclear, as does the fidelity of the record. We use a global age framework [580-510 million years (Ma) ago] to estimate changes in marine sedimentary rock volume and area, reconstructed biodiversity (mean genus richness), and sampling intensity, integrated with carbonate carbon isotopes (δ13Ccarb) and global redox data [carbonate Uranium isotopes (δ238Ucarb)]. Sampling intensity correlates with overall mean reconstructed biodiversity >535 Ma ago, while second-order (~10-80 Ma) global transgressive-regressive cycles controlled the distribution of different marine sedimentary rocks. The temporal distribution of the Avalon assemblage is partly controlled by the temporally and spatially limited record of deep-marine siliciclastic rocks. Each successive rise of metazoan morphogroups that define the Avalon, White Sea, and Cambrian assemblages appears to coincide with global shallow marine oxygenation events at δ13Ccarb maxima, which precede major sea level transgressions. While the record of biodiversity is biased, early metazoan radiations and oxygenation events are linked to major sea level cycles.
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5
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Zhao M, Mussini G, Li Y, Tang F, Vickers-Rich P, Li M, Chen A. A putative triradial macrofossil from the Ediacaran Jiangchuan Biota. iScience 2024; 27:108823. [PMID: 38303714 PMCID: PMC10831930 DOI: 10.1016/j.isci.2024.108823] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2023] [Revised: 09/28/2023] [Accepted: 01/02/2024] [Indexed: 02/03/2024] Open
Abstract
The late Ediacaran Jiangchuan biota, from the Dengying Formation in eastern Yunnan, is well-known for its diverse macroalgal fossils, opening a window onto eukaryotic-dominated ecosystems from the late Neoproterozoic of South China. Although multiple lines of evidence suggest that metazoans had already evolved by the late Ediacaran, animal fossils have not yet been formally described from this locality. Here, we report a putative disc-shaped macrofossil from the Jiangchuan biota, Lobodiscus tribrachialis gen. et sp. nov. This specimen shows the triradial symmetry characteristic of trilobozoans, a group of Ediacaran macrofossils previously documented in Australia and Russia. Lobodiscus could record the youngest known occurrence of trilobozoans, strengthening taxonomic and ecological continuities between the Ediacaran "White Sea" and "Nama" assemblages. Our findings may expand the known paleogeographical distribution of trilobozoans and provide data for Ediacaran biostratigraphic correlations across the Yangtze block and globally, helping to track the diversification of early metazoan-grade organisms.
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Affiliation(s)
- Mingsheng Zhao
- College of Paleontology, Shenyang Normal University, Shenyang 110034, China
| | - Giovanni Mussini
- Department of Earth Sciences, University of Cambridge, Cambridge CB2 3EQ, UK
| | - Yulan Li
- 111 Geological Brigade, Guizhou Bureau of Geology and Mineral Resources, Guiyang 550081, China
| | - Feng Tang
- Key Laboratory for Stratigraphy and Palaeontology, MNRC, Institute of Geology, Chinese Academy of Geological Sciences, Beijing 100037, China
| | - Patricia Vickers-Rich
- School of Earth, Atmosphere and Environment, Monash University, Melbourne, VIC 3800, Australia
- Department of Chemistry, Chemistry and Resources precinct, Curtin University, Perth, WA 6845, Australia
| | - Ming Li
- Key Laboratory for Stratigraphy and Palaeontology, MNRC, Institute of Geology, Chinese Academy of Geological Sciences, Beijing 100037, China
| | - Ailin Chen
- Research Center of Paleobiology, Yuxi Normal University, Yuxi 653100, China
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6
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Mussini G, Dunn FS. Decline and fall of the Ediacarans: late-Neoproterozoic extinctions and the rise of the modern biosphere. Biol Rev Camb Philos Soc 2024; 99:110-130. [PMID: 37667585 DOI: 10.1111/brv.13014] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2023] [Revised: 08/22/2023] [Accepted: 08/25/2023] [Indexed: 09/06/2023]
Abstract
The end-Neoproterozoic transition marked a gradual but permanent shift between distinct configurations of Earth's biosphere. This interval witnessed the demise of the enigmatic Ediacaran Biota, ushering in the structured trophic webs and disparate animal body plans of Phanerozoic ecosystems. However, little consensus exists on the reality, drivers, and macroevolutionary implications of end-Neoproterozoic extinctions. Here we evaluate potential drivers of late-Neoproterozoic turnover by addressing recent findings on Ediacaran geochronology, the persistence of classical Ediacaran macrobionts into the Cambrian, and the existence of Ediacaran crown-group eumetazoans. Despite renewed interest in the possibility of Phanerozoic-style 'mass extinctions' in the latest Neoproterozoic, our synthesis of the available evidence does not support extinction models based on episodic geochemical triggers, nor does it validate simple ecological interpretations centred on direct competitive displacement. Instead, we argue that the protracted and indirect effects of early bilaterian innovations, including escalations in sediment engineering, predation, and the largely understudied impacts of reef-building, may best account for the temporal structure and possible selectivity of late-Neoproterozoic extinctions. We integrate these processes into a generalised model of early eumetazoan-dominated ecologies, charting the disruption of spatial and temporal isotropy on the Ediacaran benthos as a consequence of diversifying macrofaunal interactions. Given the nature of resource distribution in Ediacaran ecologies, the continuities among Ediacaran and Cambrian faunas, and the convergent origins of ecologically disruptive innovations among bilaterians we suggest that the rise of Phanerozoic-type biotas may have been unstoppable.
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Affiliation(s)
- Giovanni Mussini
- Department of Earth Sciences, Downing Street, University of Cambridge, Cambridge, CB2 3EQ, UK
| | - Frances S Dunn
- Oxford University Museum of Natural History, Parks Road, University of Oxford, Oxford, OX1 3PW, UK
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7
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Meek DM, Buatois LA, Mángano MG, Eglington BM. Increased habitat segregation at the dawn of the Phanerozoic revealed by correspondence analysis of bioturbation. Sci Rep 2023; 13:22328. [PMID: 38102199 PMCID: PMC10724277 DOI: 10.1038/s41598-023-49716-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2023] [Accepted: 12/11/2023] [Indexed: 12/17/2023] Open
Abstract
The Agronomic Revolution of the early Cambrian refers to the most significant re-structuration of the benthic marine ecosystem in life history. Using a global compilation of trace-fossil records across the Ediacaran-Cambrian transition, this paper investigates the relationship between the benthos and depositional environments prior to, during, and after the Agronomic Revolution to shed light on habitat segregation via correspondence analysis. The results of this analysis characterize Ediacaran mobile benthic bilaterians as facies-crossing and opportunistic, with low levels of habitat specialization. In contrast, the Terreneuvian and Cambrian Series 2 reveal progressive habitat segregation, parallel to matground environmental restriction. This event was conducive to the establishment of distinct endobenthic communities along the marine depositional profile, showing that the increase in styles of animal-substrate interactions was expressed by both alpha and beta ichnodiversity. Habitat segregation at the dawn of the Phanerozoic may illustrate an early extension of the trophic group amensalism at community scale.
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Affiliation(s)
- Dean M Meek
- Department of Geological Sciences, University of Saskatchewan, Saskatoon, SK, S7N 5E2, Canada.
| | - Luis A Buatois
- Department of Geological Sciences, University of Saskatchewan, Saskatoon, SK, S7N 5E2, Canada
| | - M Gabriela Mángano
- Department of Geological Sciences, University of Saskatchewan, Saskatoon, SK, S7N 5E2, Canada
| | - Bruce M Eglington
- Department of Geological Sciences, University of Saskatchewan, Saskatoon, SK, S7N 5E2, Canada
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Guo S, Ma W, Tang Y, Chen L, Wang Y, Cui Y, Liang J, Li L, Zhuang J, Gu J, Li M, Fang H, Lin X, Shih C, Labandeira CC, Ren D. A new method for examining the co-occurrence network of fossil assemblages. Commun Biol 2023; 6:1102. [PMID: 37907587 PMCID: PMC10618518 DOI: 10.1038/s42003-023-05417-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2023] [Accepted: 10/04/2023] [Indexed: 11/02/2023] Open
Abstract
Currently, studies of ancient faunal community networks have been based mostly on uniformitarian and functional morphological evidence. As an important source of data, taphonomic evidence offers the opportunity to provide a broader scope for understanding palaeoecology. However, palaeoecological research methods based on taphonomic evidence are relatively rare, especially for body fossils in lacustrine sediments. Such fossil communities are not only affected by complex transportation and selective destruction in the sedimentation process, they also are strongly affected by time averaging. Historically, it has been believed that it is difficult to study lacustrine entombed fauna by a small-scale quadrat survey. Herein, we developed a software, the TaphonomeAnalyst, to study the associational network of lacustrine entombed fauna, or taphocoenosis. TaphonomeAnalyst allows researchers to easily perform exploratory analyses on common abundance profiles from taphocoenosis data. The dataset for these investigations resulted from fieldwork of the latest Middle Jurassic Jiulongshan Formation near Daohugou Village, in Ningcheng County of Inner Mongolia, China, spotlighting the core assemblage of the Yanliao Fauna. Our data included 27,000 fossil specimens of animals from this deposit, the Yanliao Fauna, whose analyses reveal sedimentary environments, taphonomic conditions, and co-occurrence networks of this highly studied assemblage, providing empirically robust and statistically significant evidence for multiple Yanliao habitats.
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Affiliation(s)
- Shilong Guo
- College of Life Sciences, Capital Normal University, Beijing, 100048, PR China
| | - Wang Ma
- Department of Bioinformatics, Freshwind Biotechnology (Tianjin) Limited Company, Tianjin, 300301, PR China
| | - Yunyu Tang
- College of Life Sciences, Capital Normal University, Beijing, 100048, PR China
| | - Liang Chen
- College of Life Sciences, Capital Normal University, Beijing, 100048, PR China
| | - Ying Wang
- Beijing Museum of Natural History, Beijing, 100050, PR China
| | - Yingying Cui
- College of Life Sciences, South China Normal University, Guangzhou, 510631, PR China
| | - Junhui Liang
- Tianjin Natural History Museum, Tianjin, 300203, PR China
| | - Longfeng Li
- Institute of Vertebrate Paleontology, College of Life Science and Technology, Gansu Agricultural University, Lanzhou, 730070, PR China
| | - Jialiang Zhuang
- College of Life Sciences, Capital Normal University, Beijing, 100048, PR China
| | - Junjie Gu
- College of Agronomy, Sichuan Agricultural University, Chengdu, Sichuan, 611130, PR China
| | - Mengfei Li
- College of Life Sciences, Capital Normal University, Beijing, 100048, PR China
| | - Hui Fang
- Institute of Paleontology, Hebei GEO University, Shijiazhuang, 050031, PR China
| | - Xiaodan Lin
- Key Laboratory of Green Prevention and Control of Tropical Plant Diseases and Pests, Ministry of Education, School of Plant Protection, Hainan University, Haikou, 570228, PR China
| | - Chungkun Shih
- College of Life Sciences, Capital Normal University, Beijing, 100048, PR China
- Department of Paleobiology, National Museum of Natural History, Smithsonian Institution, Washington, DC, 20013-7012, USA
| | - Conrad C Labandeira
- College of Life Sciences, Capital Normal University, Beijing, 100048, PR China
- Department of Paleobiology, National Museum of Natural History, Smithsonian Institution, Washington, DC, 20013-7012, USA
- Department of Entomology, University of Maryland, College Park, MD, 20742, USA
| | - Dong Ren
- College of Life Sciences, Capital Normal University, Beijing, 100048, PR China.
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9
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Darroch SA, Smith EF, Nelson LL, Craffey M, Schiffbauer JD, Laflamme M. Causes and consequences of end-Ediacaran extinction: An update. CAMBRIDGE PRISMS. EXTINCTION 2023; 1:e15. [PMID: 40078676 PMCID: PMC11895755 DOI: 10.1017/ext.2023.12] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/25/2022] [Revised: 05/01/2023] [Accepted: 05/05/2023] [Indexed: 03/14/2025]
Abstract
Since the 1980s, the existence of one or more extinction events in the late Ediacaran has been the subject of debate. Discussion surrounding these events has intensified in the last decade, in concert with efforts to understand drivers of global change over the Ediacaran-Cambrian transition and the appearance of the more modern-looking Phanerozoic biosphere. In this paper we review the history of thought and work surrounding late Ediacaran extinctions, with a particular focus on the last 5 years of paleontological, geochemical, and geochronological research. We consider the extent to which key questions have been answered, and pose new questions which will help to characterize drivers of environmental and biotic change. A key challenge for future work will be the calculation of extinction intensities that account for limited sampling, the duration of Ediacaran 'assemblage' zones, and the preponderance of taxa restricted to a single 'assemblage'; without these data, the extent to which Ediacaran bioevents represent genuine mass extinctions comparable to the 'Big 5' extinctions of the Phanerozoic remains to be rigorously tested. Lastly, we propose a revised model for drivers of late Ediacaran extinction pulses that builds off recent data and growing consensus within the field. This model is speculative, but does frame testable hypotheses that can be targeted in the next decade of work.
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Affiliation(s)
- Simon A.F. Darroch
- Department of Earth and Environmental Sciences, Vanderbilt University, Nashville, TN, USA
- Evolutionary Studies Institute, Vanderbilt University, Nashville, TN, USA
- Senckenberg Research Institute and Museum of Natural History, Frankfurt, Germany
| | - Emily F. Smith
- Department of Earth and Planetary Sciences, Johns Hopkins University, Baltimore, MD, USA
| | - Lyle L. Nelson
- Department of Earth Sciences, Carleton University, Ottawa, ON, Canada
| | - Matthew Craffey
- Department of Biological Sciences, University of Nebraska, Lincoln, NE, USA
| | - James D. Schiffbauer
- Department of Geological Sciences, University of Missouri, Columbia, MO, USA
- X-Ray Microanalysis Laboratory, University of Missouri, Columbia, MO, USA
| | - Marc Laflamme
- Department of Chemical and Physical Sciences, University of Toronto Mississauga, Mississauga, ON, Canada
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10
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Martynov AV, Korshunova TA. Renewed perspectives on the sedentary-pelagic last common bilaterian ancestor. CONTRIBUTIONS TO ZOOLOGY 2022. [DOI: 10.1163/18759866-bja10034] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
Abstract
Abstract
Various evaluations of the last common bilaterian ancestor (lcba) currently suggest that it resembled either a microscopic, non-segmented motile adult; or, on the contrary, a complex segmented adult motile urbilaterian. These fundamental inconsistencies remain largely unexplained. A majority of multidisciplinary data regarding sedentary adult ancestral bilaterian organization is overlooked. The sedentary-pelagic model is supported now by a number of novel developmental, paleontological and molecular phylogenetic data: (1) data in support of sedentary sponges, in the adult stage, as sister to all other Metazoa; (2) a similarity of molecular developmental pathways in both adults and larvae across sedentary sponges, cnidarians, and bilaterians; (3) a cnidarian-bilaterian relationship, including a unique sharing of a bona fide Hox-gene cluster, of which the evolutionary appearance does not connect directly to a bilaterian motile organization; (4) the presence of sedentary and tube-dwelling representatives of the main bilaterian clades in the early Cambrian; (5) an absence of definite taxonomic attribution of Ediacaran taxa reconstructed as motile to any true bilaterian phyla; (6) a similarity of tube morphology (and the clear presence of a protoconch-like apical structure of the Ediacaran sedentary Cloudinidae) among shells of the early Cambrian, and later true bilaterians, such as semi-sedentary hyoliths and motile molluscs; (7) recent data that provide growing evidence for a complex urbilaterian, despite a continuous molecular phylogenetic controversy. The present review compares the main existing models and reconciles the sedentary model of an urbilaterian and the model of a larva-like lcba with a unified sedentary(adult)-pelagic(larva) model of the lcba.
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Affiliation(s)
- Alexander V. Martynov
- Zoological Museum, Moscow State University, Bolshaya Nikitskaya Str. 6, 125009 Moscow, Russia,
| | - Tatiana A. Korshunova
- Koltzov Institute of Developmental Biology RAS, 26 Vavilova Str., 119334 Moscow, Russia
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11
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Eden R, Manica A, Mitchell EG. Metacommunity analyses show an increase in ecological specialisation throughout the Ediacaran period. PLoS Biol 2022; 20:e3001289. [PMID: 35580078 PMCID: PMC9113585 DOI: 10.1371/journal.pbio.3001289] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2021] [Accepted: 03/29/2022] [Indexed: 11/18/2022] Open
Abstract
The first animals appear during the late Ediacaran (572 to 541 Ma); an initial diversity increase was followed reduction in diversity, often interpreted as catastrophic mass extinction. We investigate Ediacaran ecosystem structure changes over this time period using the “Elements of Metacommunity Structure” framework to assess whether this diversity reduction in the Nama was likely caused by an external mass extinction, or internal metacommunity restructuring. The oldest metacommunity was characterised by taxa with wide environmental tolerances, and limited specialisation or intertaxa associations. Structuring increased in the second oldest metacommunity, with groups of taxa sharing synchronous responses to environmental gradients, aggregating into distinct communities. This pattern strengthened in the youngest metacommunity, with communities showing strong environmental segregation and depth structure. Thus, metacommunity structure increased in complexity, with increased specialisation and resulting in competitive exclusion, not a catastrophic environmental disaster, leading to diversity loss in the terminal Ediacaran. These results reveal that the complex eco-evolutionary dynamics associated with Cambrian diversification were established in the Ediacaran. This study shows that the eco-evolutionary dynamics of metazoan diversification known from the Cambrian Period started earlier in the Ediacaran Period with the Avalon assemblage and increased in complexity towards the Phanerozoic as new anatomical innovations appeared, culminating in the “Cambrian Explosion."
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Affiliation(s)
- Rebecca Eden
- Department of Zoology, University of Cambridge, Cambridge, United Kingdom
| | - Andrea Manica
- Department of Zoology, University of Cambridge, Cambridge, United Kingdom
| | - Emily G. Mitchell
- Department of Zoology, University of Cambridge, Cambridge, United Kingdom
- * E-mail:
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12
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Wang C, Hazen RM, Cheng Q, Stephenson MH, Zhou C, Fox P, Shen SZ, Oberhänsli R, Hou Z, Ma X, Feng Z, Fan J, Ma C, Hu X, Luo B, Wang J, Schiffries CM. The Deep-Time Digital Earth program: data-driven discovery in geosciences. Natl Sci Rev 2021; 8:nwab027. [PMID: 34691735 PMCID: PMC8433093 DOI: 10.1093/nsr/nwab027] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2020] [Revised: 02/03/2021] [Accepted: 02/05/2021] [Indexed: 11/29/2022] Open
Abstract
Current barriers hindering data-driven discoveries in deep-time Earth (DE) include: substantial volumes of DE data are not digitized; many DE databases do not adhere to FAIR (findable, accessible, interoperable and reusable) principles; we lack a systematic knowledge graph for DE; existing DE databases are geographically heterogeneous; a significant fraction of DE data is not in open-access formats; tailored tools are needed. These challenges motivate the Deep-Time Digital Earth (DDE) program initiated by the International Union of Geological Sciences and developed in cooperation with national geological surveys, professional associations, academic institutions and scientists around the world. DDE’s mission is to build on previous research to develop a systematic DE knowledge graph, a FAIR data infrastructure that links existing databases and makes dark data visible, and tailored tools for DE data, which are universally accessible. DDE aims to harmonize DE data, share global geoscience knowledge and facilitate data-driven discovery in the understanding of Earth's evolution.
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Affiliation(s)
- Chengshan Wang
- State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Beijing 100083, China
| | - Robert M Hazen
- Earth and Planets Laboratory, Carnegie Institution for Science, Washington, DC 20015, USA
| | - Qiuming Cheng
- State Key Laboratory of Geological Processes and Mineral Resources, China University of Geosciences, Beijing 100083, China
| | | | - Chenghu Zhou
- State Key Laboratory of Resources and Environment Information System, Institute of Geographical Science and Natural Resources, Chinese Academy of Sciences, Beijing 100101, China
| | - Peter Fox
- Tetherless World Constellation, Rensselaer Polytechnic Institute, Troy, NY 12180, USA
| | - Shu-Zhong Shen
- School of Earth Sciences and Engineering, Nanjing University, Nanjing 210023, China
| | - Roland Oberhänsli
- Institute of Earth and Environmental Sciences, University of Potsdam, Potsdam 14476, Germany
| | - Zengqian Hou
- Institute of Geology, Chinese Academy of Geological Sciences, Beijing 100037, China
| | - Xiaogang Ma
- Department of Computer Science, University of Idaho, Moscow, ID 83844, USA
| | - Zhiqiang Feng
- Petroleum Exploration and Production Research Institute, SINOPEC, Beijing 100083, China
| | - Junxuan Fan
- School of Earth Sciences and Engineering, Nanjing University, Nanjing 210023, China
| | - Chao Ma
- Department of Computer Science, University of Idaho, Moscow, ID 83844, USA
| | - Xiumian Hu
- School of Earth Sciences and Engineering, Nanjing University, Nanjing 210023, China
| | - Bin Luo
- State Key Laboratory of Resources and Environment Information System, Institute of Geographical Science and Natural Resources, Chinese Academy of Sciences, Beijing 100101, China
| | - Juanle Wang
- State Key Laboratory of Resources and Environment Information System, Institute of Geographical Science and Natural Resources, Chinese Academy of Sciences, Beijing 100101, China
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13
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Lyons TW, Diamond CW, Planavsky NJ, Reinhard CT, Li C. Oxygenation, Life, and the Planetary System during Earth's Middle History: An Overview. ASTROBIOLOGY 2021; 21:906-923. [PMID: 34314605 PMCID: PMC8403206 DOI: 10.1089/ast.2020.2418] [Citation(s) in RCA: 34] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 05/07/2023]
Abstract
The long history of life on Earth has unfolded as a cause-and-effect relationship with the evolving amount of oxygen (O2) in the oceans and atmosphere. Oxygen deficiency characterized our planet's first 2 billion years, yet evidence for biological O2 production and local enrichments in the surface ocean appear long before the first accumulations of O2 in the atmosphere roughly 2.4 to 2.3 billion years ago. Much has been written about this fundamental transition and the related balance between biological O2 production and sinks coupled to deep Earth processes that could buffer against the accumulation of biogenic O2. However, the relationship between complex life (eukaryotes, including animals) and later oxygenation is less clear. Some data suggest O2 was higher but still mostly low for another billion and a half years before increasing again around 800 million years ago, potentially setting a challenging course for complex life during its initial development and ecological expansion. The apparent rise in O2 around 800 million years ago is coincident with major developments in complex life. Multiple geochemical and paleontological records point to a major biogeochemical transition at that time, but whether rising and still dynamic biospheric oxygen triggered or merely followed from innovations in eukaryotic ecology, including the emergence of animals, is still debated. This paper focuses on the geochemical records of Earth's middle history, roughly 1.8 to 0.5 billion years ago, as a backdrop for exploring possible cause-and-effect relationships with biological evolution and the primary controls that may have set its pace, including solid Earth/tectonic processes, nutrient limitation, and their possible linkages. A richer mechanistic understanding of the interplay between coevolving life and Earth surface environments can provide a template for understanding and remotely searching for sustained habitability and even life on distant exoplanets.
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Affiliation(s)
- Timothy W. Lyons
- Department of Earth and Planetary Sciences, University of California, Riverside, California, USA
- Address correspondence to: Timothy W. Lyons, Department of Earth and Planetary Sciences, University of California, Riverside, CA 92521, USA
| | - Charles W. Diamond
- Department of Earth and Planetary Sciences, University of California, Riverside, California, USA
| | - Noah J. Planavsky
- Department of Earth and Planetary Sciences, Yale University, New Haven, Connecticut, USA
| | - Christopher T. Reinhard
- School of Earth and Atmospheric Sciences, Georgia Institute of Technology, Atlanta, Georgia, USA
| | - Chao Li
- State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Wuhan, China
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14
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Blanco F, Calatayud J, Martín-Perea DM, Domingo MS, Menéndez I, Müller J, Fernández MH, Cantalapiedra JL. Punctuated ecological equilibrium in mammal communities over evolutionary time scales. Science 2021; 372:300-303. [PMID: 33859037 DOI: 10.1126/science.abd5110] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2020] [Accepted: 02/23/2021] [Indexed: 11/02/2022]
Abstract
The study of deep-time ecological dynamics has the ability to inform conservation decisions by anticipating the behavior of ecosystems millions of years into the future. Using network analysis and an exceptional fossil dataset spanning the past 21 million years, we show that mammalian ecological assemblages undergo long periods of functional stasis, notwithstanding high taxonomic volatility due to dispersal, speciation, and extinction. Higher functional richness and diversity promoted the persistence of functional faunas despite species extinction risk being indistinguishable among these different faunas. These findings, and the large mismatch between functional and taxonomic successions, indicate that although safeguarding functional diversity may or may not minimize species losses, it would certainly enhance the persistence of ecosystem functioning in the face of future disturbances.
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Affiliation(s)
- Fernando Blanco
- Museum für Naturkunde, Leibniz-Institut für Evolutions- und Biodiversitätsforschung, an der Humboldt- Universität zu Berlin, Invalidenstrasse 43, 10115 Berlin, Germany.
| | - Joaquín Calatayud
- Departamento de Biología, Geología, Física y Química Inorgánica, Universidad Rey Juan Carlos, Calle Tulipán s/n, 28933 Móstoles, Spain
| | - David M Martín-Perea
- Museo Nacional de Ciencias Naturales-Consejo Superior de Investigaciones Científicas (CSIC), Calle José Gutiérrez Abascal 2, 28006 Madrid, Spain.,Departamento de Geodinámica, Estratigrafía y Paleontología, Universidad Complutense de Madrid, C/ José Antonio Nováis 12, 28040 Madrid, Spain.,Instituto de Evolución Humana en África IDEA, Calle Covarrubias 26, 28010 Madrid, Spain
| | - M Soledad Domingo
- Departamento de Didáctica de las Ciencias Experimentales, Ciencias Sociales y Matemáticas, Universidad Complutense de Madrid (UCM), C/Rector Royo Villanova s/n, 28040 Madrid, Spain
| | - Iris Menéndez
- Departamento de Geodinámica, Estratigrafía y Paleontología, Universidad Complutense de Madrid, C/ José Antonio Nováis 12, 28040 Madrid, Spain.,Departamento de Cambio Medioambiental, Instituto de Geociencias (UCM, CSIC), C/ Severo Ochoa 7, 28040 Madrid, Spain
| | - Johannes Müller
- Museum für Naturkunde, Leibniz-Institut für Evolutions- und Biodiversitätsforschung, an der Humboldt- Universität zu Berlin, Invalidenstrasse 43, 10115 Berlin, Germany
| | - Manuel Hernández Fernández
- Departamento de Geodinámica, Estratigrafía y Paleontología, Universidad Complutense de Madrid, C/ José Antonio Nováis 12, 28040 Madrid, Spain.,Departamento de Cambio Medioambiental, Instituto de Geociencias (UCM, CSIC), C/ Severo Ochoa 7, 28040 Madrid, Spain
| | - Juan L Cantalapiedra
- Departamento de Ciencias de la Vida, GloCEE Global Change Ecology and Evolution Research Group, Universidad de Alcalá, Plaza de San Diego s/n, 28801 Alcalá de Henares, Spain
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15
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Swain A, Devereux M, Fagan WF. Deciphering trophic interactions in a mid-Cambrian assemblage. iScience 2021; 24:102271. [PMID: 33817576 PMCID: PMC8010449 DOI: 10.1016/j.isci.2021.102271] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2020] [Revised: 12/07/2020] [Accepted: 03/02/2021] [Indexed: 11/23/2022] Open
Abstract
Exceptionally preserved fossil sites have allowed specimen-based identification of trophic interactions to which network analyses have been applied. However, network analyses of the fossil record suffer from incomplete and indirect data, time averaging that obscures species coexistence, and biases in preservation. Here, we present a high-resolution fossil data set from Raymond Quarry member of the mid-Cambrian Burgess Shale (7,549 specimens, 61 taxa, ∼510 Mya) and formulate a measure of "preservation bias" that aids identification of assemblage subsets to which network analyses can be reliably applied. For these sections, abundance correlation network analyses predicted longitudinally consistent trophic and competitive interactions. Our analyses predicted previously postulated trophic interactions with 83.5% accuracy and demonstrated a shift from specialist interaction-dominated assemblages to ones dominated by generalist and competitive interactions. This approach provides a robust, taphonomically corrected framework to explore and predict in detail the existence and ecological character of putative interactions in fossil data sets.
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Affiliation(s)
- Anshuman Swain
- Department of Biology, University of Maryland, College Park, MD 20742, USA
| | - Matthew Devereux
- Department of Earth Science, Western University, London, ON, Canada
| | - William F. Fagan
- Department of Biology, University of Maryland, College Park, MD 20742, USA
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16
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A multiscale view of the Phanerozoic fossil record reveals the three major biotic transitions. Commun Biol 2021; 4:309. [PMID: 33686149 PMCID: PMC7977041 DOI: 10.1038/s42003-021-01805-y] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2020] [Accepted: 02/03/2021] [Indexed: 11/14/2022] Open
Abstract
The hypothesis of the Great Evolutionary Faunas is a foundational concept of macroevolutionary research postulating that three global mega-assemblages have dominated Phanerozoic oceans following abrupt biotic transitions. Empirical estimates of this large-scale pattern depend on several methodological decisions and are based on approaches unable to capture multiscale dynamics of the underlying Earth-Life System. Combining a multilayer network representation of fossil data with a multilevel clustering that eliminates the subjectivity inherent to distance-based approaches, we demonstrate that Phanerozoic oceans sequentially harbored four global benthic mega-assemblages. Shifts in dominance patterns among these global marine mega-assemblages were abrupt (end-Cambrian 494 Ma; end-Permian 252 Ma) or protracted (mid-Cretaceous 129 Ma), and represent the three major biotic transitions in Earth’s history. Our findings suggest that gradual ecological changes associated with the Mesozoic Marine Revolution triggered a protracted biotic transition comparable in magnitude to the end-Permian transition initiated by the most severe biotic crisis of the past 500 million years. Overall, our study supports the notion that both long-term ecological changes and major geological events have played crucial roles in shaping the mega-assemblages that dominated Phanerozoic oceans. Rojas et al. present a new multi-scale model that reveals the three major biotic transitions of the Phanerozoic fossil record. This new model supports the hypothesis that both long-term ecological changes and major geological events played crucial roles in shaping ocean mega-assemblages through the Phanerozoic.
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17
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Becker-Kerber B, de Barros GEB, Paim PSG, Prado GMEM, da Rosa ALZ, El Albani A, Laflamme M. In situ filamentous communities from the Ediacaran (approx. 563 Ma) of Brazil. Proc Biol Sci 2021; 288:20202618. [PMID: 33402067 DOI: 10.1098/rspb.2020.2618] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022] Open
Abstract
Precambrian filamentous microfossils are common and diverse. Nevertheless, their taxonomic assignment can be difficult owing to their overall simple shapes typically lacking in diagnostic features. Here, we report in situ communities of well-preserved, large filamentous impressions from the Ediacaran Itajaí Basin (ca 563 Ma) of Brazil. The filaments are uniserial (unbranched) and can reach up to 200 µm in width and up to 44 mm in length. They occur as both densely packed or sparsely populated surfaces, and typically show a consistent orientation. Although simple in shape, their preferred orientation suggests they were tethered to the seafloor, and their overall flexibility (e.g. bent, folded and twisted) supports a biological (rather than sedimentary) affinity. Biometric comparisons with modern filamentous groups further support their biological affinity, suggesting links with either large sulfide-oxidizing bacteria (SOB) or eukaryotes. Other morphological and palaeoecological characteristics further corroborates their similarities with modern large filamentous SOB. Their widespread occurrence and association with complex Ediacaran macrobiota (e.g. frondose organisms, Palaeopascichnus) suggest that they probably played an important role in the ecological dynamics of these early benthic communities by providing firm substrates for metazoans to inhabit. It is further hypothesized that the dynamic redox condition in the latest Ediacaran, with the non-continuous rise in oxygen concentration and periods of hypoxia, may have created ideal conditions for SOB to thrive.
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Affiliation(s)
- Bruno Becker-Kerber
- Programa de Pós-Graduação em Ecologia e Recursos Naturais, Universidade Federal de São Carlos, Washington Luiz, 325 km, São Carlos (SP) 13565-905, Brazil.,Unité Mixte de Recherche (UMR), Centre National de la Recherche Scientifique (CNRS), IC2MP 7285, University of Poitiers, 86073 Poitiers, France
| | - Gabriel Eduardo Baréa de Barros
- Programa de Pós-Graduação em Biologia Comparada, Departamento de Biologia, Faculdade de Filosofia, Ciências e Letras de Ribeirão Preto (FFCLRP), Universidade de São Paulo (USP), Avenue Bandeirantes, 3900-Vila Monte Alegre, 14049-900, Ribeirão Preto, São Paulo, Brazil
| | - Paulo Sergio Gomes Paim
- Programa de Pós-Graduação em Geologia, Universidade do Vale do Rio dos Sinos, 93.022-750, São Leopoldo (RS), Brazil
| | - Gustavo M E M Prado
- Programa de Pós Graduação em Geoquímica e Geotectônica, Instituto de Geociências, Universidade de São Paulo (USP), Avenue Bandeirantes, 3900-Vila Monte Alegre, 14049-900, Ribeirão Preto, São Paulo, Brazil
| | | | - Abderrazak El Albani
- Unité Mixte de Recherche (UMR), Centre National de la Recherche Scientifique (CNRS), IC2MP 7285, University of Poitiers, 86073 Poitiers, France
| | - Marc Laflamme
- Department of Chemical and Physical Sciences, University of Toronto Mississauga, 3359 Mississauga Road, Mississauga, Ontario, Canada L5 L 1C6
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18
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Gibson BM, Furbish DJ, Rahman IA, Schmeeckle MW, Laflamme M, Darroch SAF. Ancient life and moving fluids. Biol Rev Camb Philos Soc 2020; 96:129-152. [PMID: 32959981 PMCID: PMC7821342 DOI: 10.1111/brv.12649] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2020] [Revised: 08/21/2020] [Accepted: 08/25/2020] [Indexed: 11/27/2022]
Abstract
Over 3.7 billion years of Earth history, life has evolved complex adaptations to help navigate and interact with the fluid environment. Consequently, fluid dynamics has become a powerful tool for studying ancient fossils, providing insights into the palaeobiology and palaeoecology of extinct organisms from across the tree of life. In recent years, this approach has been extended to the Ediacara biota, an enigmatic assemblage of Neoproterozoic soft‐bodied organisms that represent the first major radiation of macroscopic eukaryotes. Reconstructing the ways in which Ediacaran organisms interacted with the fluids provides new insights into how these organisms fed, moved, and interacted within communities. Here, we provide an in‐depth review of fluid physics aimed at palaeobiologists, in which we dispel misconceptions related to the Reynolds number and associated flow conditions, and specify the governing equations of fluid dynamics. We then review recent advances in Ediacaran palaeobiology resulting from the application of computational fluid dynamics (CFD). We provide a worked example and account of best practice in CFD analyses of fossils, including the first large eddy simulation (LES) experiment performed on extinct organisms. Lastly, we identify key questions, barriers, and emerging techniques in fluid dynamics, which will not only allow us to understand the earliest animal ecosystems better, but will also help to develop new palaeobiological tools for studying ancient life.
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Affiliation(s)
- Brandt M Gibson
- Department of Earth and Environmental Sciences, Vanderbilt University, PMB 351805, 2301 Vanderbilt Place, Nashville, TN, 37235-1805, U.S.A
| | - David J Furbish
- Department of Earth and Environmental Sciences, Vanderbilt University, PMB 351805, 2301 Vanderbilt Place, Nashville, TN, 37235-1805, U.S.A
| | - Imran A Rahman
- Oxford University Museum of Natural History, Parks Road, Oxford, OX1 3PW, U.K
| | - Mark W Schmeeckle
- School of Geographical Sciences and Urban Planning, Arizona State University, Tempe, AZ, 85281, U.S.A
| | - Marc Laflamme
- Department of Chemical and Physical Sciences, University of Toronto Mississauga, 3356 Mississauga Rd North, Mississauga, Ontario, L5L 1C6, Canada
| | - Simon A F Darroch
- Department of Earth and Environmental Sciences, Vanderbilt University, PMB 351805, 2301 Vanderbilt Place, Nashville, TN, 37235-1805, U.S.A
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19
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Mitchell EG, Bobkov N, Bykova N, Dhungana A, Kolesnikov AV, Hogarth IRP, Liu AG, Mustill TMR, Sozonov N, Rogov VI, Xiao S, Grazhdankin DV. The influence of environmental setting on the community ecology of Ediacaran organisms. Interface Focus 2020; 10:20190109. [PMID: 32642052 DOI: 10.1098/rsfs.2019.0109] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 04/14/2020] [Indexed: 11/12/2022] Open
Abstract
The broad-scale environment plays a substantial role in shaping modern marine ecosystems, but the degree to which palaeocommunities were influenced by their environment is unclear. To investigate how broad-scale environment influenced the community ecology of early animal ecosystems, we employed spatial point process analyses (SPPA) to examine the community structure of seven late Ediacaran (558-550 Ma) bedding-plane assemblages drawn from a range of environmental settings and global localities. The studied palaeocommunities exhibit marked differences in the response of their component taxa to sub-metre-scale habitat heterogeneities on the seafloor. Shallow-marine (nearshore) palaeocommunities were heavily influenced by local habitat heterogeneities, in contrast to their deeper-water counterparts. The local patchiness within shallow-water communities may have been further accentuated by the presence of grazers and detritivores, whose behaviours potentially initiated a propagation of increasing habitat heterogeneity of benthic communities from shallow to deep-marine depositional environments. Higher species richness in shallow-water Ediacaran assemblages compared to deep-water counterparts across the studied time-interval could have been driven by this environmental patchiness, because habitat heterogeneities increase species richness in modern marine environments. Our results provide quantitative support for the 'Savannah' hypothesis for early animal diversification-whereby Ediacaran diversification was driven by patchiness in the local benthic environment.
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Affiliation(s)
- Emily G Mitchell
- Department of Zoology, University of Cambridge, Downing Street, Cambridge CB2 3EJ, UK
| | - Nikolai Bobkov
- Trofimuk Institute of Petroleum Geology and Geophysics, 3, Ac. Koptyuga ave., Novosibirsk 630090, Russian Federation.,Novosibirsk State University, Novosibirsk, Novosibirsk Oblast 630090, Russian Federation
| | - Natalia Bykova
- Trofimuk Institute of Petroleum Geology and Geophysics, 3, Ac. Koptyuga ave., Novosibirsk 630090, Russian Federation.,Department of Geosciences, Virginia Tech, Blacksburg, VA 24061, USA
| | - Alavya Dhungana
- Department of Earth Sciences, Durham University, Lower Mountjoy, South Road, Durham DH1 3LE, UK
| | - Anton V Kolesnikov
- Trofimuk Institute of Petroleum Geology and Geophysics, 3, Ac. Koptyuga ave., Novosibirsk 630090, Russian Federation.,Geological Institute, Russian Academy of Sciences, Pygevsky 7, Moscow 119017, Russia.,Faculty of Geography, Moscow State Pedagogical University, Kibalchicha str. 16, Moscow 129626, Russia
| | - Ian R P Hogarth
- Department of Chemical Engineering, University of Cambridge, Philippa Fawcett Drive, Cambridge CB3 0AS, UK
| | - Alexander G Liu
- Department of Earth Sciences, University of Cambridge, Downing Street, Cambridge CB2 3EQ, UK
| | - Tom M R Mustill
- Department of Earth Sciences, University of Cambridge, Downing Street, Cambridge CB2 3EQ, UK
| | - Nikita Sozonov
- Trofimuk Institute of Petroleum Geology and Geophysics, 3, Ac. Koptyuga ave., Novosibirsk 630090, Russian Federation.,Novosibirsk State University, Novosibirsk, Novosibirsk Oblast 630090, Russian Federation
| | - Vladimir I Rogov
- Trofimuk Institute of Petroleum Geology and Geophysics, 3, Ac. Koptyuga ave., Novosibirsk 630090, Russian Federation
| | - Shuhai Xiao
- Department of Geosciences, Virginia Tech, Blacksburg, VA 24061, USA
| | - Dmitriy V Grazhdankin
- Trofimuk Institute of Petroleum Geology and Geophysics, 3, Ac. Koptyuga ave., Novosibirsk 630090, Russian Federation.,Novosibirsk State University, Novosibirsk, Novosibirsk Oblast 630090, Russian Federation
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20
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Mángano MG, Buatois LA. The rise and early evolution of animals: where do we stand from a trace-fossil perspective? Interface Focus 2020; 10:20190103. [PMID: 32642049 DOI: 10.1098/rsfs.2019.0103] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 04/15/2020] [Indexed: 01/10/2023] Open
Abstract
The trace-fossil record provides a wealth of information to track the rise and early evolution of animals. It comprises the activity of both hard- and soft-bodied organisms, is continuous through the Ediacaran (635-539 Ma)- Cambrian (539-485 Ma) transition, yields insights into animal behaviour and their role as ecosystem engineers, and allows for a more refined characterization of palaeoenvironmental context. In order to unravel macroevolutionary signals from the trace-fossil record, a variety of approaches is available, including not only estimation of degree of bioturbation, but also analysis of ichnodiversity and ichnodisparity trajectories, and evaluation of the occupation of infaunal ecospace and styles of ecosystem engineering. Analysis of the trace-fossil record demonstrates the presence of motile benthic bilaterians in the Ediacaran, mostly feeding from biofilms. Although Ediacaran trace fossils are simple and emplaced at or immediately below the sediment surface, an increase in ichnofossil complexity, predation pressure, sediment disturbance and penetration depth is apparent during the terminal Ediacaran. Regardless of this increase, a dramatic rise in trace fossil diversity and disparity took place during the earliest Cambrian, underscoring that the novelty of the Fortunian (539-529 Ma) cannot be underestimated. The Fortunian still shows the persistence of an Ediacaran-style matground ecology, but is fundamentally characterized by the appearance of new trace-fossil architectural plans reflecting novel ways of interacting with the substrate. The appearance of Phanerozoic-style benthic ecosystems attests to an increased length and connectivity of the food web and improved efficiency in organic carbon transfer and nutrient recycling. A profound reorganization of the infaunal ecospace is recorded in both high-energy sand-dominated nearshore areas and low-energy mud-dominated offshore environments, during the early Cambrian, starting approximately during Cambrian Age 2 (529-521 Ma), but continuing during the rest of the early Cambrian. A model comprising four evolutionary phases is proposed to synthetize information from the Ediacaran-Cambrian trace-fossil record. The use of a rich ichnological toolbox; critical, systematic and comprehensive evaluation of the Ediacaran-Cambrian trace-fossil record; and high-resolution integration of the ichnological dataset and sedimentological information show that the advent of biogenic mixing was an important factor in fully marine environments at the dawn of the Phanerozoic.
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Affiliation(s)
- M Gabriela Mángano
- Department of Geological Sciences, University of Saskatchewan, 114 Science Place, Saskatoon, Saskatchewan, Canada S7N 5E2
| | - Luis A Buatois
- Department of Geological Sciences, University of Saskatchewan, 114 Science Place, Saskatoon, Saskatchewan, Canada S7N 5E2
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21
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Foster WJ, Garvie CL, Weiss AM, Muscente AD, Aberhan M, Counts JW, Martindale RC. Resilience of marine invertebrate communities during the early Cenozoic hyperthermals. Sci Rep 2020; 10:2176. [PMID: 32034228 PMCID: PMC7005832 DOI: 10.1038/s41598-020-58986-5] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2019] [Accepted: 01/16/2020] [Indexed: 11/21/2022] Open
Abstract
The hyperthermal events of the Cenozoic, including the Paleocene-Eocene Thermal Maximum, provide an opportunity to investigate the potential effects of climate warming on marine ecosystems. Here, we examine the shallow benthic marine communities preserved in the late Cretaceous to Eocene strata on the Gulf Coastal Plain (United States). In stark contrast to the ecological shifts following the end-Cretaceous mass extinction, our data show that the early Cenozoic hyperthermals did not have a long-term impact on the generic diversity nor composition of the Gulf Coastal Plain molluscan communities. We propose that these communities were resilient to climate change because molluscs are better adapted to high temperatures than other taxa, as demonstrated by their physiology and evolutionary history. In terms of resilience, these communities differ from other shallow-water carbonate ecosystems, such as reef communities, which record significant changes during the early Cenozoic hyperthermals. These data highlight the strikingly different responses of community types, i.e., the almost imperceptible response of molluscs versus the marked turnover of foraminifera and reef faunas. The impact on molluscan communities may have been low because detrimental conditions did not devastate the entire Gulf Coastal Plain, allowing molluscs to rapidly recolonise vacated areas once harsh environmental conditions ameliorated.
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Affiliation(s)
- William J Foster
- Museum für Naturkunde, Leibniz Institute for Evolution and Biodiversity, Invalidenstraße 43, Berlin, 10115, Germany. .,University of Potsdam, Institute for Geosciences, Karl-Liebknecht Straße 24-25, Potsdam-Golm, 14476, Germany. .,University College Dublin, School of Earth Sciences, Belfield, Dublin, 4, Ireland.
| | - Christopher L Garvie
- Non-Vertebrate Paleontology Laboratory, Texas Natural Science Center, The University of Texas at Austin, 10100 Burnet Road, Austin, Texas, 78758, USA
| | - Anna M Weiss
- The University of Texas at Austin, Department of Geological Sciences, 2275 Speedway, Austin, Texas, 78712, USA
| | - A D Muscente
- The University of Texas at Austin, Department of Geological Sciences, 2275 Speedway, Austin, Texas, 78712, USA.,Cornell College, Department of Geology, Mount Vernon, Iowa, 600 First Street SW, 52314, USA
| | - Martin Aberhan
- Museum für Naturkunde, Leibniz Institute for Evolution and Biodiversity, Invalidenstraße 43, Berlin, 10115, Germany
| | - John W Counts
- University College Dublin, School of Earth Sciences, Belfield, Dublin, 4, Ireland
| | - Rowan C Martindale
- The University of Texas at Austin, Department of Geological Sciences, 2275 Speedway, Austin, Texas, 78712, USA
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22
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Schiffbauer JD, Selly T, Jacquet SM, Merz RA, Nelson LL, Strange MA, Cai Y, Smith EF. Discovery of bilaterian-type through-guts in cloudinomorphs from the terminal Ediacaran Period. Nat Commun 2020; 11:205. [PMID: 31924764 PMCID: PMC6954273 DOI: 10.1038/s41467-019-13882-z] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2019] [Accepted: 12/04/2019] [Indexed: 11/08/2022] Open
Abstract
The fossil record of the terminal Ediacaran Period is typified by the iconic index fossil Cloudina and its relatives. These tube-dwellers are presumed to be primitive metazoans, but resolving their phylogenetic identity has remained a point of contention. The root of the problem is a lack of diagnostic features; that is, phylogenetic interpretations have largely centered on the only available source of information-their external tubes. Here, using tomographic analyses of fossils from the Wood Canyon Formation (Nevada, USA), we report evidence of recognizable soft tissues within their external tubes. Although alternative interpretations are plausible, these internal cylindrical structures may be most appropriately interpreted as digestive tracts, which would be, to date, the earliest-known occurrence of such features in the fossil record. If this interpretation is correct, their nature as one-way through-guts not only provides evidence for establishing these fossils as definitive bilaterians but also has implications for the long-debated phylogenetic position of the broader cloudinomorphs.
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Affiliation(s)
- James D Schiffbauer
- Department of Geological Sciences, University of Missouri, Columbia, MO, 65211, USA.
- X-ray Microanalysis Core, University of Missouri, Columbia, MO, 65211, USA.
| | - Tara Selly
- Department of Geological Sciences, University of Missouri, Columbia, MO, 65211, USA.
- X-ray Microanalysis Core, University of Missouri, Columbia, MO, 65211, USA.
| | - Sarah M Jacquet
- Department of Geological Sciences, University of Missouri, Columbia, MO, 65211, USA
| | - Rachel A Merz
- Biology Department, Swarthmore College, Swarthmore, PA, 19081, USA
| | - Lyle L Nelson
- Department of Earth and Planetary Sciences, Johns Hopkins University, Baltimore, MD, 21218, USA
| | - Michael A Strange
- Department of Geoscience, University of Nevada, Las Vegas, Las Vegas, NV, 89154, USA
| | - Yaoping Cai
- Shaanxi Key Laboratory of Early Life and Environment, State Key Laboratory of Continental Dynamics, and Department of Geology, Northwest University, Xi'an, 710069, China
| | - Emily F Smith
- Department of Earth and Planetary Sciences, Johns Hopkins University, Baltimore, MD, 21218, USA
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23
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Cribb AT, Kenchington CG, Koester B, Gibson BM, Boag TH, Racicot RA, Mocke H, Laflamme M, Darroch SAF. Increase in metazoan ecosystem engineering prior to the Ediacaran-Cambrian boundary in the Nama Group, Namibia. ROYAL SOCIETY OPEN SCIENCE 2019; 6:190548. [PMID: 31598294 PMCID: PMC6774933 DOI: 10.1098/rsos.190548] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/22/2019] [Accepted: 08/23/2019] [Indexed: 05/20/2023]
Abstract
The disappearance of the soft-bodied Ediacara biota at the Ediacaran-Cambrian boundary potentially represents the earliest mass extinction of complex life, although the precise driver(s) of this extinction remain unresolved. The 'biotic replacement' model proposes that an evolutionary radiation of metazoan ecosystem engineers in the latest Ediacaran profoundly altered marine palaeoenvironments, resulting in the extinction of Ediacara biota and setting the stage for the subsequent Cambrian Explosion. However, metazoan ecosystem engineering across the Ediacaran-Cambrian transition has yet to be quantified. Here, we test this key tenet of the biotic replacement model by characterizing the intensity of metazoan bioturbation and ecosystem engineering in trace fossil assemblages throughout the latest Ediacaran Nama Group in southern Namibia. The results illustrate a dramatic increase in both bioturbation and ecosystem engineering intensity in the latest Ediacaran, prior to the Cambrian boundary. Moreover, our analyses demonstrate that the highest-impact ecosystem engineering behaviours were present well before the onset of the Cambrian. These data provide the first support for a fundamental prediction of the biotic replacement model, and evidence for a direct link between the early evolution of ecosystem engineering and the extinction of the Ediacara biota.
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Affiliation(s)
- Alison T. Cribb
- Earth and Environmental Science, Vanderbilt University, Nashville, TN 37235-1805, USA
- Earth Sciences, University of Southern California, Los Angeles, CA 90089-0740, USA
| | | | - Bryce Koester
- Earth and Environmental Science, Vanderbilt University, Nashville, TN 37235-1805, USA
- Department of Biodiversity, Drexel University, Philadelphia, PA, 19104, USA
| | - Brandt M. Gibson
- Earth and Environmental Science, Vanderbilt University, Nashville, TN 37235-1805, USA
| | - Thomas H. Boag
- Geological Sciences, Stanford University, Stanford, CA 94304, USA
| | - Rachel A. Racicot
- Earth and Environmental Science, Vanderbilt University, Nashville, TN 37235-1805, USA
| | - Helke Mocke
- Geological Survey of Namibia, Ministry of Mines and Energy, Windhoek, Namibia
| | - Marc Laflamme
- Chemical and Physical Sciences, University of Toronto Mississauga, Mississauga, Ontario, CanadaL5L 1C6
| | - Simon A. F. Darroch
- Earth and Environmental Science, Vanderbilt University, Nashville, TN 37235-1805, USA
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24
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Tang Q, Wan B, Yuan X, Muscente AD, Xiao S. Spiculogenesis and biomineralization in early sponge animals. Nat Commun 2019; 10:3348. [PMID: 31350398 PMCID: PMC6659672 DOI: 10.1038/s41467-019-11297-4] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2018] [Accepted: 06/28/2019] [Indexed: 11/08/2022] Open
Abstract
Most sponges have biomineralized spicules. Molecular clocks indicate sponge classes diverged in the Cryogenian, but the oldest spicules are Cambrian in age. Therefore, sponges either evolved spiculogenesis long after their divergences or Precambrian spicules were not amenable to fossilization. The former hypothesis predicts independent origins of spicules among sponge classes and presence of transitional forms with weakly biomineralized spicules, but this prediction has not been tested using paleontological data. Here, we report an early Cambrian sponge that, like several other early Paleozoic sponges, had weakly biomineralized and hexactine-based siliceous spicules with large axial filaments and high organic proportions. This material, along with Ediacaran microfossils containing putative non-biomineralized axial filaments, suggests that Precambrian sponges may have had weakly biomineralized spicules or lacked them altogether, hence their poor record. This work provides a new search image for Precambrian sponge fossils, which are critical to resolving the origin of sponge spiculogenesis and biomineralization.
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Affiliation(s)
- Qing Tang
- Department of Geosciences and Global Change Center, Virginia Tech, Blacksburg, VA, 24061, USA
| | - Bin Wan
- State Key Laboratory of Palaeobiology and Stratigraphy, Nanjing Institute of Geology and Palaeontology and Center for Excellence in Life and Palaeoenvironment, Chinese Academy of Sciences, 210008, Nanjing, China
- University of Chinese Academy of Sciences, 100049, Beijing, China
| | - Xunlai Yuan
- State Key Laboratory of Palaeobiology and Stratigraphy, Nanjing Institute of Geology and Palaeontology and Center for Excellence in Life and Palaeoenvironment, Chinese Academy of Sciences, 210008, Nanjing, China
- University of Chinese Academy of Sciences, 100049, Beijing, China
| | - A D Muscente
- Department of Geological Sciences, University of Texas, Austin, TX, 78712, USA
| | - Shuhai Xiao
- Department of Geosciences and Global Change Center, Virginia Tech, Blacksburg, VA, 24061, USA.
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25
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Lane N. Why is Life the Way it Is? MOLECULAR FRONTIERS JOURNAL 2019. [DOI: 10.1142/s252973251940008x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
The concept of the three domains of life (the bacteria, archaea and eukaryotes) goes back to Carl Woese in 1990 1 . Most scientists now see the eukaryotes (cells with a true nucleus) as a secondary domain, derived from bacteria and archaea via an endosymbiosis 2 . That makes the last universal common ancestor of life (LUCA) the ancestor of bacteria and archaea 3 . While these domains are strikingly different in their genetics and biochemistry 4 , they are nearly indistinguishable in their cellular morphology — historically, both groups have been classed as prokaryotes. In terms of their metabolic versatility and molecular machinery, prokaryotes are if anything more sophisticated than eukaryotes 5 . Yet despite an exhaustive search of genetic sequence space in virtually infinite populations over four billion years, neither domain evolved morphological complexity to compare with eukaryotes 5 . The evolutionary path to morphological complexity does not seem to depend on genetic information alone 6 . The most plausible explanation is that physical constraints stemming from the topological structure of prokaryotes blocked the evolution of morphological complexity in prokaryotes, and that the endosymbiosis at the origin of eukaryotes relieved these constraints 6 . In this lecture, I shall argue that the dependence of all life on electrical charges across membranes to generate energy explains the structural constraints on prokaryotes, and the escape from these constraints in eukaryotes 7 .
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Affiliation(s)
- Nick Lane
- Centre for Life’s Origin and Evolution, Department of Genetics, Evolution and Environment, University College London, Gower Street, London WC1E 6BT, UK
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