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For: Libis V, MacIntyre LW, Mehmood R, Guerrero L, Ternei MA, Antonovsky N, Burian J, Wang Z, Brady SF. Multiplexed mobilization and expression of biosynthetic gene clusters. Nat Commun 2022;13:5256. [PMID: 36068239 DOI: 10.1038/s41467-022-32858-0] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2022] [Accepted: 08/17/2022] [Indexed: 01/25/2023]  Open
Number Cited by Other Article(s)
1
Dinglasan JLN, Otani H, Doering DT, Udwary D, Mouncey NJ. Microbial secondary metabolites: advancements to accelerate discovery towards application. Nat Rev Microbiol 2025;23:338-354. [PMID: 39824928 DOI: 10.1038/s41579-024-01141-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 12/05/2024] [Indexed: 01/20/2025]
2
Ford JJ, Santos-Aberturas J, Hems ES, Sallmen JW, Bögeholz LAK, Polturak G, Osbourn A, Wright JA, Rodnina MV, Vereecke D, Francis IM, Truman AW. Identification of the lydiamycin biosynthetic gene cluster in a plant pathogen guides structural revision and identification of molecular target. Proc Natl Acad Sci U S A 2025;122:e2424388122. [PMID: 40388608 DOI: 10.1073/pnas.2424388122] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2024] [Accepted: 04/07/2025] [Indexed: 05/21/2025]  Open
3
Liu Y, Tang Y, Fu Z, Zhu W, Wang H, Zhang H. BGC heteroexpression strategy for production of novel microbial secondary metabolites. Metab Eng 2025;91:1-29. [PMID: 40158686 DOI: 10.1016/j.ymben.2025.03.018] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2024] [Revised: 03/13/2025] [Accepted: 03/27/2025] [Indexed: 04/02/2025]
4
Augustijn HE, van Nassauw D, Cernat S, Reitz ZL, van Wezel GP, Medema MH. Regulatory Genes as Beacons for Discovery and Prioritization of Biosynthetic Gene Clusters in Streptomyces. Biochemistry 2025. [PMID: 40133269 DOI: 10.1021/acs.biochem.4c00711] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/27/2025]
5
Salamzade R, Kalan LR. Context matters: assessing the impacts of genomic background and ecology on microbial biosynthetic gene cluster evolution. mSystems 2025;10:e0153824. [PMID: 39992097 PMCID: PMC11915812 DOI: 10.1128/msystems.01538-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/25/2025]  Open
6
Cardona ST, Rahman ASMZ, Novomisky Nechcoff J. Innovative perspectives on the discovery of small molecule antibiotics. NPJ ANTIMICROBIALS AND RESISTANCE 2025;3:19. [PMID: 40082593 PMCID: PMC11906701 DOI: 10.1038/s44259-025-00089-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/03/2024] [Accepted: 02/24/2025] [Indexed: 03/16/2025]
7
Chen YN, Cui YZ, Chen XR, Wang JY, Li BZ, Yuan YJ. Direct cloning strategies for large genomic fragments: A review. Biotechnol Adv 2025;79:108494. [PMID: 39637950 DOI: 10.1016/j.biotechadv.2024.108494] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2024] [Revised: 10/08/2024] [Accepted: 11/30/2024] [Indexed: 12/07/2024]
8
Lai HE, Woolner VH, Little RF, Woolly EF, Keyzers RA, Owen JG. Calcium-Dependent Lipopeptide Antibiotics against Drug-Resistant Pathogens Discovered via Host-Dependent Heterologous Expression of a Cloned Biosynthetic Gene Cluster. Angew Chem Int Ed Engl 2024;63:e202410286. [PMID: 39175099 DOI: 10.1002/anie.202410286] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2024] [Revised: 08/17/2024] [Accepted: 08/20/2024] [Indexed: 08/24/2024]
9
Romano KP, Bagnall J, Warrier T, Sullivan J, Ferrara K, Orzechowski M, Nguyen PH, Raines K, Livny J, Shoresh N, Hung DT. Perturbation-specific transcriptional mapping for unbiased target elucidation of antibiotics. Proc Natl Acad Sci U S A 2024;121:e2409747121. [PMID: 39467118 PMCID: PMC11551328 DOI: 10.1073/pnas.2409747121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/10/2024] [Accepted: 09/23/2024] [Indexed: 10/30/2024]  Open
10
Paulo BS, Recchia MJJ, Lee S, Fergusson CH, Romanowski SB, Hernandez A, Krull N, Liu DY, Cavanagh H, Bos A, Gray CA, Murphy BT, Linington RG, Eustaquio AS. Discovery of megapolipeptins by genome mining of a Burkholderiales bacteria collection. Chem Sci 2024;15:d4sc03594a. [PMID: 39309087 PMCID: PMC11411415 DOI: 10.1039/d4sc03594a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2024] [Accepted: 09/11/2024] [Indexed: 09/25/2024]  Open
11
Han JR, Li S, Li WJ, Dong L. Mining microbial and metabolic dark matter in extreme environments: a roadmap for harnessing the power of multi-omics data. ADVANCED BIOTECHNOLOGY 2024;2:26. [PMID: 39883228 PMCID: PMC11740847 DOI: 10.1007/s44307-024-00034-8] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/12/2024] [Revised: 07/18/2024] [Accepted: 07/26/2024] [Indexed: 01/31/2025]
12
Lewis K, Lee RE, Brötz-Oesterhelt H, Hiller S, Rodnina MV, Schneider T, Weingarth M, Wohlgemuth I. Sophisticated natural products as antibiotics. Nature 2024;632:39-49. [PMID: 39085542 PMCID: PMC11573432 DOI: 10.1038/s41586-024-07530-w] [Citation(s) in RCA: 29] [Impact Index Per Article: 29.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/28/2022] [Accepted: 05/07/2024] [Indexed: 08/02/2024]
13
Romano KP, Bagnall J, Warrier T, Sullivan J, Ferrara K, Orzechowski M, Nguyen P, Raines K, Livny J, Shoresh N, Hung D. Perturbation-Specific Transcriptional Mapping for unbiased target elucidation of antibiotics. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.04.25.590978. [PMID: 38712067 PMCID: PMC11071498 DOI: 10.1101/2024.04.25.590978] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/08/2024]
14
Deng Z, Liu C, Wang F, Song N, Liu J, Li H, Liu S, Li T, Liu Z, Xiao F, Li W. A Versatile Thioesterase Involved in Dimerization during Cinnamoyl Lipid Biosynthesis. Angew Chem Int Ed Engl 2024;63:e202402010. [PMID: 38462490 DOI: 10.1002/anie.202402010] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2024] [Revised: 03/07/2024] [Accepted: 03/07/2024] [Indexed: 03/12/2024]
15
Cook GD, Stasulli NM. Employing synthetic biology to expand antibiotic discovery. SLAS Technol 2024;29:100120. [PMID: 38340893 DOI: 10.1016/j.slast.2024.100120] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2023] [Revised: 01/04/2024] [Accepted: 02/07/2024] [Indexed: 02/12/2024]
16
Peng H, Schmiederer J, Chen X, Panagiotou G, Kries H. Controlling Substrate- and Stereospecificity of Condensation Domains in Nonribosomal Peptide Synthetases. ACS Chem Biol 2024;19:599-606. [PMID: 38395426 PMCID: PMC10949931 DOI: 10.1021/acschembio.3c00678] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2023] [Revised: 01/30/2024] [Accepted: 02/09/2024] [Indexed: 02/25/2024]
17
Tay DWP, Tan LL, Heng E, Zulkarnain N, Ching KC, Wibowo M, Chin EJ, Tan ZYQ, Leong CY, Ng VWP, Yang LK, Seow DCS, Lim YW, Koh W, Koduru L, Kanagasundaram Y, Ng SB, Lim YH, Wong FT. Exploring a general multi-pronged activation strategy for natural product discovery in Actinomycetes. Commun Biol 2024;7:50. [PMID: 38184720 PMCID: PMC10771470 DOI: 10.1038/s42003-023-05648-7] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2023] [Accepted: 11/29/2023] [Indexed: 01/08/2024]  Open
18
Bunyat-Zada AR, Ross AC. Highlights of bioinformatic tools and methods for validating bioinformatics derived hypotheses for microbial natural products research. Curr Opin Chem Biol 2023;76:102367. [PMID: 37453164 DOI: 10.1016/j.cbpa.2023.102367] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2022] [Revised: 06/14/2023] [Accepted: 06/16/2023] [Indexed: 07/18/2023]
19
Egas C, Galbán-Malagón C, Castro-Nallar E, Molina-Montenegro MA. Role of Microbes in the degradation of organic semivolatile compounds in polar ecosystems: A review. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023;879:163046. [PMID: 36965736 DOI: 10.1016/j.scitotenv.2023.163046] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/21/2022] [Revised: 03/09/2023] [Accepted: 03/20/2023] [Indexed: 05/17/2023]
20
Kadjo AE, Eustáquio AS. Bacterial natural product discovery by heterologous expression. J Ind Microbiol Biotechnol 2023;50:kuad044. [PMID: 38052428 PMCID: PMC10727000 DOI: 10.1093/jimb/kuad044] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2023] [Accepted: 12/04/2023] [Indexed: 12/07/2023]
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