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Pessoa L. The Spiraling Cognitive-Emotional Brain: Combinatorial, Reciprocal, and Reentrant Macro-organization. J Cogn Neurosci 2024; 36:2697-2711. [PMID: 38530327 PMCID: PMC12005377 DOI: 10.1162/jocn_a_02146] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/27/2024]
Abstract
This article proposes a framework for understanding the macro-scale organization of anatomical pathways in the mammalian brain. The architecture supports flexible behavioral decisions across a spectrum of spatiotemporal scales. The proposal emphasizes the combinatorial, reciprocal, and reentrant connectivity-called CRR neuroarchitecture-between cortical, BG, thalamic, amygdala, hypothalamic, and brainstem circuits. Thalamic nuclei, especially midline/intralaminar nuclei, are proposed to act as hubs routing the flow of signals between noncortical areas and pFC. The hypothalamus also participates in multiregion circuits via its connections with cortex and thalamus. At slower timescales, long-range behaviors integrate signals across levels of the neuroaxis. At fast timescales, parallel engagement of pathways allows urgent behaviors while retaining flexibility. Overall, the proposed architecture enables context-dependent, adaptive behaviors spanning proximate to distant spatiotemporal scales. The framework promotes an integrative perspective and a distributed, heterarchical view of brain function.
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De Preter CC, Leimer EM, Sonneborn A, Heinricher MM. Comparative analysis of spike-sorters in large-scale brainstem recordings. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.11.11.623089. [PMID: 39605601 PMCID: PMC11601346 DOI: 10.1101/2024.11.11.623089] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 11/29/2024]
Abstract
Recent technological advancements in high-density multi-channel electrodes have made it possible to record large numbers of neurons from previously inaccessible regions. While the performance of automated spike-sorters has been assessed in recordings from cortex, dentate gyrus, and thalamus, the most effective and efficient approach for spike-sorting can depend on the target region due to differing morphological and physiological characteristics. We therefore assessed the performance of five commonly used sorting packages, Kilosort3, MountainSort5, Tridesclous, SpyKING CIRCUS, and IronClust, in recordings from the rostral ventromedial medulla, a region that has been characterized using single-electrode recordings but that is essentially unexplored at the high-density network level. As demonstrated in other brain regions, each sorter produced unique results. Manual curation preferentially eliminated units detected by only one sorter. Kilosort3 and IronClust required the least curation while maintaining the largest number of units, whereas SpyKING CIRCUS and MountainSort5 required substantial curation. Tridesclous consistently identified the smallest number of units. Nonetheless, all sorters successfully identified classically defined RVM physiological cell types. These findings suggest that while the level of manual curation needed may vary across sorters, each can extract meaningful data from this deep brainstem site.
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Affiliation(s)
- Caitlynn C De Preter
- Department of Behavioral Neuroscience, Oregon Health & Science University, Portland, OR, 97239, USA
- Department of Neurological Surgery, Oregon Health & Science University, Portland, OR, 97239, USA
| | - Elizabeth M Leimer
- Department of Anesthesiology and Perioperative Medicine, Oregon Health & Science University, Portland, OR, 97239, USA
| | - Alex Sonneborn
- Department of Behavioral Neuroscience, Oregon Health & Science University, Portland, OR, 97239, USA
- VA Portland Health Care System, Portland, OR, 97239, USA
| | - Mary M Heinricher
- Department of Behavioral Neuroscience, Oregon Health & Science University, Portland, OR, 97239, USA
- Department of Neurological Surgery, Oregon Health & Science University, Portland, OR, 97239, USA
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Boi L, Johansson Y, Tonini R, Moratalla R, Fisone G, Silberberg G. Serotonergic and dopaminergic neurons in the dorsal raphe are differentially altered in a mouse model for parkinsonism. eLife 2024; 12:RP90278. [PMID: 38940422 PMCID: PMC11213571 DOI: 10.7554/elife.90278] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/29/2024] Open
Abstract
Parkinson's disease (PD) is characterized by motor impairments caused by degeneration of dopamine neurons in the substantia nigra pars compacta. In addition to these symptoms, PD patients often suffer from non-motor comorbidities including sleep and psychiatric disturbances, which are thought to depend on concomitant alterations of serotonergic and noradrenergic transmission. A primary locus of serotonergic neurons is the dorsal raphe nucleus (DRN), providing brain-wide serotonergic input. Here, we identified electrophysiological and morphological parameters to classify serotonergic and dopaminergic neurons in the murine DRN under control conditions and in a PD model, following striatal injection of the catecholamine toxin, 6-hydroxydopamine (6-OHDA). Electrical and morphological properties of both neuronal populations were altered by 6-OHDA. In serotonergic neurons, most changes were reversed when 6-OHDA was injected in combination with desipramine, a noradrenaline (NA) reuptake inhibitor, protecting the noradrenergic terminals. Our results show that the depletion of both NA and dopamine in the 6-OHDA mouse model causes changes in the DRN neural circuitry.
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Affiliation(s)
- Laura Boi
- Department of Neuroscience, Karolinska InstituteStockholmSweden
| | - Yvonne Johansson
- Department of Neuroscience, Karolinska InstituteStockholmSweden
- Sainsbury Wellcome Centre for Neural Circuits and Behaviour, University College LondonLondonUnited Kingdom
| | - Raffaella Tonini
- Neuromodulation of Cortical and Subcortical Circuits Laboratory, Istituto Italiano di TecnologiaGenovaItaly
| | - Rosario Moratalla
- Cajal Institute, Spanish National Research Council (CSIC)MadridSpain
- CIBERNED, Instituto de Salud Carlos IIIMadridSpain
| | - Gilberto Fisone
- Department of Neuroscience, Karolinska InstituteStockholmSweden
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Shirdhankar RN, Malkemper EP. Cognitive maps and the magnetic sense in vertebrates. Curr Opin Neurobiol 2024; 86:102880. [PMID: 38657284 DOI: 10.1016/j.conb.2024.102880] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2023] [Revised: 03/04/2024] [Accepted: 04/02/2024] [Indexed: 04/26/2024]
Abstract
Navigation requires a network of neurons processing inputs from internally generated cues and external landmarks. Most studies on the neuronal basis of navigation in vertebrates have focused on rats and mice and the canonical senses vision, hearing, olfaction, and somatosensation. Some animals have evolved the ability to sense the Earth's magnetic field and use it for orientation. It can be expected that in these animals magnetic cues are integrated with other sensory cues in the cognitive map. We provide an overview of the behavioral evidence and brain regions involved in magnetic sensing in support of this idea, hoping that this will guide future experiments.
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Affiliation(s)
- Runita N Shirdhankar
- Research Group Neurobiology of Magnetoreception, Max Planck Institute for Neurobiology of Behavior - Caesar, Ludwig-Erhard-Allee 2, Bonn 53175, Germany; International Max Planck Research School for Brain and Behavior, Bonn, Germany
| | - E Pascal Malkemper
- Research Group Neurobiology of Magnetoreception, Max Planck Institute for Neurobiology of Behavior - Caesar, Ludwig-Erhard-Allee 2, Bonn 53175, Germany.
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Tsai HY, Lapanan K, Lin YH, Huang CW, Lin WW, Lin MM, Lu ZL, Lin FS, Tseng MT. Integration of Prior Expectations and Suppression of Prediction Errors During Expectancy-Induced Pain Modulation: The Influence of Anxiety and Pleasantness. J Neurosci 2024; 44:e1627232024. [PMID: 38453467 PMCID: PMC11044194 DOI: 10.1523/jneurosci.1627-23.2024] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2023] [Revised: 01/25/2024] [Accepted: 03/03/2024] [Indexed: 03/09/2024] Open
Abstract
Pain perception arises from the integration of prior expectations with sensory information. Although recent work has demonstrated that treatment expectancy effects (e.g., placebo hypoalgesia) can be explained by a Bayesian integration framework incorporating the precision level of expectations and sensory inputs, the key factor modulating this integration in stimulus expectancy-induced pain modulation remains unclear. In a stimulus expectancy paradigm combining emotion regulation in healthy male and female adults, we found that participants' voluntary reduction in anticipatory anxiety and pleasantness monotonically reduced the magnitude of pain modulation by negative and positive expectations, respectively, indicating a role of emotion. For both types of expectations, Bayesian model comparisons confirmed that an integration model using the respective emotion of expectations and sensory inputs explained stimulus expectancy effects on pain better than using their respective precision. For negative expectations, the role of anxiety is further supported by our fMRI findings that (1) functional coupling within anxiety-processing brain regions (amygdala and anterior cingulate) reflected the integration of expectations with sensory inputs and (2) anxiety appeared to impair the updating of expectations via suppressed prediction error signals in the anterior cingulate, thus perpetuating negative expectancy effects. Regarding positive expectations, their integration with sensory inputs relied on the functional coupling within brain structures processing positive emotion and inhibiting threat responding (medial orbitofrontal cortex and hippocampus). In summary, different from treatment expectancy, pain modulation by stimulus expectancy emanates from emotion-modulated integration of beliefs with sensory evidence and inadequate belief updating.
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Affiliation(s)
- Hsin-Yun Tsai
- Taiwan International Graduate Program in Interdisciplinary Neuroscience, National Taiwan University and Academia Sinica, Taipei 11574, Taiwan
| | - Kulvara Lapanan
- Graduate Institute of Brain and Mind Sciences, National Taiwan University College of Medicine, Taipei 10051, Taiwan
| | - Yi-Hsuan Lin
- Taiwan International Graduate Program in Interdisciplinary Neuroscience, National Taiwan University and Academia Sinica, Taipei 11574, Taiwan
| | - Cheng-Wei Huang
- Graduate Institute of Clinical Medicine, National Taiwan University College of Medicine, Taipei 10048, Taiwan
| | - Wen-Wei Lin
- Graduate Institute of Brain and Mind Sciences, National Taiwan University College of Medicine, Taipei 10051, Taiwan
| | - Min-Min Lin
- Graduate Institute of Brain and Mind Sciences, National Taiwan University College of Medicine, Taipei 10051, Taiwan
| | - Zheng-Liang Lu
- Department of Computer Science and Information Engineering, National Taiwan University, Taipei 10617, Taiwan
| | - Feng-Sheng Lin
- Department of Anesthesiology, National Taiwan University Hospital, Taipei 10048, Taiwan
| | - Ming-Tsung Tseng
- Graduate Institute of Brain and Mind Sciences, National Taiwan University College of Medicine, Taipei 10051, Taiwan
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Pessoa L. Noncortical cognition: integration of information for close-proximity behavioral problem-solving. Curr Opin Behav Sci 2024; 55:101329. [PMID: 38655379 PMCID: PMC11034795 DOI: 10.1016/j.cobeha.2023.101329] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/26/2024]
Abstract
Animals face behavioral problems that can be conceptualized in terms of a gradient of spatial and temporal proximity. I propose that solving close-proximity behavioral problems involves integrating disparate types of information in complex and flexible ways. In this framework, the midbrain periaqueductal gray (PAG) is understood as a key region involved in close-proximity motivated cognition. Anatomically, the PAG has access to signals across the neuroaxis via extensive connectivity with cortex, subcortex, and brainstem. However, the flow of signals is not unidirectional, as the PAG projects to the cortex directly, and further ascending signal flow is attained via the midline thalamus. Overall, the anatomical organization of the PAG allows is to be a critical hub engaged in cognition "here and now".
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Affiliation(s)
- Luiz Pessoa
- Department of Psychology, Department of Electrical and Computer Engineering, Maryland Neuroimaging Center, University of Maryland, College Park, MD 20742, USA
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Wright KM, Cieslewski S, Chu A, McDannald MA. Optogenetic inhibition of the caudal substantia nigra inflates behavioral responding to uncertain threat and safety. Behav Neurosci 2023; 137:347-355. [PMID: 37796586 PMCID: PMC10966587 DOI: 10.1037/bne0000568] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/06/2023]
Abstract
Defensive responding is adaptive when it approximates the current threat but maladaptive when it exceeds the current threat. Here we asked if the substantia nigra, a region consistently implicated in reward, is necessary to show appropriate levels of defensive responding in Pavlovian fear discrimination. Rats received bilateral transduction of the caudal substantia nigra with halorhodopsin or a control fluorophore and bilateral ferrule implants. Rats then behaviorally discriminated cues predicting unique foot shock probabilities (danger, p = 1; uncertainty, p = .25; and safety, p = 0). Green-light illumination (532 nm) during cue presentation inflated defensive responding of halorhodopsin rats-measured by suppression of reward seeking-to uncertainty and safety beyond control levels. Green-light illumination outside of cue presentation had no impact on halorhodopsin or control rat responding. The results reveal caudal substantia nigra cue activity is necessary to inhibit defensive responding to nonthreatening and uncertain threat cues. (PsycInfo Database Record (c) 2023 APA, all rights reserved).
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Affiliation(s)
| | | | - Amanda Chu
- Boston College, Department of Psychology & Neuroscience
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Yau JOY, McNally GP. The Rescorla-Wagner model, prediction error, and fear learning. Neurobiol Learn Mem 2023; 203:107799. [PMID: 37442411 DOI: 10.1016/j.nlm.2023.107799] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2023] [Revised: 05/01/2023] [Accepted: 06/28/2023] [Indexed: 07/15/2023]
Abstract
The Rescorla-Wagner model remains one of the most important and influential theoretical accounts of the conditions under which Pavlovian learning occurs. Moreover, the experimental approaches that inspired the model continue to provide powerful behavioral tools to advance mechanistic understanding of how we and other animals learn to fear and learn to reduce fear. Here we consider key features of the Rescorla-Wagner model as applied to study of fear learning. We review evidence for key insights of the model. First, learning to fear and learning to reduce fear are governed by a common, signed prediction error. Second, this error drives variations in effectiveness of the shock US that are causal to whether and how much fear is learned or lost during a conditioning trial. We also consider behavioral and neural findings inconsistent with the model and which will be essential to understand and advance understanding of fear learning.
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Affiliation(s)
| | - Gavan P McNally
- School of Psychology, The University of New South Wales, Australia.
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Wright KM, Cieslewski S, Chu A, McDannald MA. Optogenetic inhibition of the caudal substantia nigra inflates behavioral responding to uncertain threat and safety. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.02.18.529041. [PMID: 36824795 PMCID: PMC9949108 DOI: 10.1101/2023.02.18.529041] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/20/2023]
Abstract
Defensive responding is adaptive when it approximates current threat, but maladaptive when it exceeds current threat. Here we asked if the substantia nigra, a region consistently implicated in reward, is necessary to show appropriate levels of defensive responding in Pavlovian fear discrimination. Rats received bilateral transduction of the caudal substantia nigra with halorhodopsin or a control fluorophore, and bilateral ferrule implants. Rats then behaviorally discriminated cues predicting unique foot shock probabilities (danger, p =1; uncertainty, p =0.25; and safety, p =0). Green-light illumination (532 nm) during cue presentation inflated defensive responding of halorhodopsin rats - measured by suppression of reward seeking - to uncertainty and safety beyond control levels. Green-light illumination outside of cue presentation had no impact on halorhodopsin or control rat responding. The results reveal caudal substantia nigra cue activity is necessary to inhibit defensive responding to non-threatening and uncertain threat cues.
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Affiliation(s)
| | | | - Amanda Chu
- Boston College, Department of Psychology & Neuroscience
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Zhang XO, Do Monte FH. Positioning the brainstem within the neural network of threat prediction. Trends Neurosci 2023; 46:91-93. [PMID: 36470706 PMCID: PMC9877175 DOI: 10.1016/j.tins.2022.11.004] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2022] [Accepted: 11/20/2022] [Indexed: 12/05/2022]
Abstract
In a recent study, Strickland and McDannald dissected the role of brainstem networks in threat prediction. Using probabilistic threat discrimination in rats, the authors demonstrated that brainstem neurons estimate threat probability and generate positive aversive prediction errors after unexpected outcomes. Their findings suggest that, beyond organizing defensive behaviors, brainstem neurons are involved in threat prediction computations.
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Affiliation(s)
- Xu O Zhang
- Department of Neurobiology and Anatomy, The University of Texas Health Science Center at Houston, Houston, TX, USA
| | - Fabricio H Do Monte
- Department of Neurobiology and Anatomy, The University of Texas Health Science Center at Houston, Houston, TX, USA.
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