Deep learning enables satellite-based monitoring of large populations of terrestrial mammals across heterogeneous landscape

Future scientific paradigms in the integration of materials, aerospace and information

This perspective dissects the fourth paradigm in aerospace systems and explores how future paradigms drive collaborative advancement by integrating materials, aerospace, and information to address deep space exploration and interdisciplinary research challenges.

A call for increased integration of experimental approaches in movement ecology

Rapid developments in animal-tracking technology have enabled major advances in the field of movement ecology, which seeks to understand the drivers and consequences of movement across scales, taxa, and ecosystems. The field has made ground-breaking discoveries, yet the majority of studies in movement ecology remain reliant on observational approaches. While important, observational studies are limited compared to experimental methods that can reveal causal relationships and underlying mechanisms. As such, we advocate for a renewed focus on experimental approaches in animal movement ecology. We illustrate a way forward in experimental movement ecology across two fundamental levels of biological organisation: individuals and social groups. We then explore the application of experiments in movement ecology to study anthropogenic influences on wildlife movement, and enhance our mechanistic understanding of conservation interventions. In each of these examples, we draw upon previous research that has effectively employed experimental approaches, while highlighting outstanding questions that could be answered by further experimentation. We conclude by highlighting the ways experimental manipulations in both laboratory and natural settings provide a promising way forward to generate mechanistic understandings of the drivers, consequences, and conservation of animal movement.

Pure data correction enhancing remote sensing image classification with a lightweight ensemble model

The classification of remote sensing images is inherently challenging due to the complexity, diversity, and sparsity of the data across different image samples. Existing advanced methods often require substantial modifications to model architectures to achieve optimal performance, resulting in complex frameworks that are difficult to adapt. To overcome these limitations, we propose a lightweight ensemble method, enhanced by pure data correction, called the Exceptionally Straightforward Ensemble. This approach eliminates the need for extensive structural modifications to models. A key innovation in our method is the introduction of a novel strategy, quantitative augmentation, implemented through a plug-and-play module. This strategy effectively corrects feature distributions across remote sensing data, significantly improving the performance of Convolutional Neural Networks and Vision Transformers beyond traditional data augmentation techniques. Furthermore, we propose a straightforward algorithm to generate an ensemble network composed of two components, serving as the proposed lightweight classifier. We evaluate our method on three well-known datasets, with results demonstrating that our ensemble models outperform 48 state-of-the-art methods published since 2020, excelling in accuracy, inference speed, and model compactness. Specifically, our models achieve an overall accuracy of up to 96.8%, representing a 1.1% improvement on the challenging NWPU45 dataset. Moreover, the smallest model in our ensemble reduces parameters by up to 90% and inference time by 74%. Notably, our approach significantly enhances the performance of Convolutional Neural Networks and Vision Transformers, even with limited training data, thus alleviating the performance dependence on large-scale datasets. In summary, our data-driven approach offers an efficient, accessible solution for remote sensing image classification, providing an elegant alternative for researchers in geoscience fields who may have limited time or resources for model optimization.

Ensemble transformer-based multiple instance learning to predict pathological subtypes and tumor mutational burden from histopathological whole slide images of endometrial and colorectal cancer

In endometrial cancer (EC) and colorectal cancer (CRC), in addition to microsatellite instability, tumor mutational burden (TMB) has gradually gained attention as a genomic biomarker that can be used clinically to determine which patients may benefit from immune checkpoint inhibitors. High TMB is characterized by a large number of mutated genes, which encode aberrant tumor neoantigens, and implies a better response to immunotherapy. Hence, a part of EC and CRC patients associated with high TMB may have higher chances to receive immunotherapy. TMB measurement was mainly evaluated by whole-exome sequencing or next-generation sequencing, which was costly and difficult to be widely applied in all clinical cases. Therefore, an effective, efficient, low-cost and easily accessible tool is urgently needed to distinguish the TMB status of EC and CRC patients. In this study, we present a deep learning framework, namely Ensemble Transformer-based Multiple Instance Learning with Self-Supervised Learning Vision Transformer feature encoder (ETMIL-SSLViT), to predict pathological subtype and TMB status directly from the H&E stained whole slide images (WSIs) in EC and CRC patients, which is helpful for both pathological classification and cancer treatment planning. Our framework was evaluated on two different cancer cohorts, including an EC cohort with 918 histopathology WSIs from 529 patients and a CRC cohort with 1495 WSIs from 594 patients from The Cancer Genome Atlas. The experimental results show that the proposed methods achieved excellent performance and outperforming seven state-of-the-art (SOTA) methods in cancer subtype classification and TMB prediction on both cancer datasets. Fisher's exact test further validated that the associations between the predictions of the proposed models and the actual cancer subtype or TMB status are both extremely strong (p<0.001). These promising findings show the potential of our proposed methods to guide personalized treatment decisions by accurately predicting the EC and CRC subtype and the TMB status for effective immunotherapy planning for EC and CRC patients.

Deep Learning-Based Microscopic Cell Detection Using Inverse Distance Transform and Auxiliary Counting

Microscopic cell detection is a challenging task due to significant inter-cell occlusions in dense clusters and diverse cell morphologies. This paper introduces a novel framework designed to enhance automated cell detection. The proposed approach integrates a deep learning model that produces an inverse distance transform-based detection map from the given image, accompanied by a secondary network designed to regress a cell density map from the same input. The inverse distance transform-based map effectively highlights each cell instance in the densely populated areas, while the density map accurately estimates the total cell count in the image. Then, a custom counting-aided cell center extraction strategy leverages the cell count obtained by integrating over the density map to refine the detection process, significantly reducing false responses and thereby boosting overall accuracy. The proposed framework demonstrated superior performance with F-scores of 96.93%, 91.21%, and 92.00% on the VGG, MBM, and ADI datasets, respectively, surpassing existing state-of-the-art methods. It also achieved the lowest distance error, further validating the effectiveness of the proposed approach. These results demonstrate significant potential for automated cell analysis in biomedical applications.

Deciphering social traits and pathophysiological conditions from natural behaviors in common marmosets

Nonhuman primates (NHPs) are indispensable animal models by virtue of the continuity of behavioral repertoires across primates, including humans. However, behavioral assessment at the laboratory level has so far been limited. Employing the application of three-dimensional (3D) pose estimation and the optimal integration of subsequent analytic methodologies, we demonstrate that our artificial intelligence (AI)-based approach has successfully deciphered the ethological, cognitive, and pathological traits of common marmosets from their natural behaviors. By applying multiple deep neural networks trained with large-scale datasets, we established an evaluation system that could reconstruct and estimate the 3D poses of the marmosets, a small NHP that is suitable for analyzing complex natural behaviors in laboratory setups. We further developed downstream analytic methodologies to quantify a variety of behavioral parameters beyond motion kinematics. We revealed the distinct parental roles of male and female marmosets through automated detections of food-sharing behaviors using a spatial-temporal filter on 3D poses. Employing a recurrent neural network to analyze 3D pose time series data during social interactions, we additionally discovered that marmosets adjusted their behaviors based on others' internal state, which is not directly observable but can be inferred from the sequence of others' actions. Moreover, a fully unsupervised approach enabled us to detect progressively appearing symptomatic behaviors over a year in a Parkinson's disease model. The high-throughput and versatile nature of an AI-driven approach to analyze natural behaviors will open a new avenue for neuroscience research dealing with big-data analyses of social and pathophysiological behaviors in NHPs.

Conceptualizing future groundwater models through a ternary framework of multisource data, human expertise, and machine intelligence

Groundwater models are essential for understanding aquifer systems behavior and effective water resources spatio-temporal distributions, yet they are often hindered by challenges related to model assumptions, parametrization, uncertainty, and computational efficiency. Machine intelligence, especially deep learning, promises a paradigm shift in overcoming these challenges. A critical examination of existing machine-driven methods reveals the inherent limitations, particularly in terms of the interpretability and the ability to generalize findings. To overcome these challenges, we develop a ternary framework that synergizes the valuable insights from multisource data, human expertise, and machine intelligence. This framework capitalizes on the distinct strengths of each element: the value and relevance of multisource data, the innovative capacity of human expertise, and the analytical efficiency of machine intelligence. Our goal is to conceptualize sustainable water management practices and enhance our understanding and predictive capabilities of groundwater systems. Unlike approaches that rely solely on abundant data, our framework emphasizes the quality and strategic use of available data, combined with human intellect and advanced computing, to overcome current limitations and pave the way for more realistic groundwater simulations.

Reptile Identification for Endemic and Invasive Alien Species Using Transfer Learning Approaches

The Canary Islands are considered a hotspot of biodiversity and have high levels of endemicity, including endemic reptile species. Nowadays, some invasive alien species of reptiles are proliferating with no control in different parts of the territory, creating a dangerous situation for the ecosystems of this archipelago. Despite the fact that the regional authorities have initiated actions to try to control the proliferation of invasive species, the problem has not been solved as it depends on sporadic sightings, and it is impossible to determine when these species appear. Since no studies for automatically identifying certain species of reptiles endemic to the Canary Islands have been found in the current state-of-the-art, from the Signals and Communications Department of the Las Palmas de Gran Canaria University (ULPGC), we consider the possibility of developing a detection system based on automatic species recognition using deep learning (DL) techniques. So this research conducts an initial identification study of some species of interest by implementing different neural network models based on transfer learning approaches. This study concludes with a comparison in which the best performance is achieved by integrating the EfficientNetV2B3 base model, which has a mean Accuracy of 98.75%.