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Puri D, Allison KR. Escherichia coli self-organizes developmental rosettes. Proc Natl Acad Sci U S A 2024; 121:e2315850121. [PMID: 38814871 PMCID: PMC11161754 DOI: 10.1073/pnas.2315850121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2023] [Accepted: 05/01/2024] [Indexed: 06/01/2024] Open
Abstract
Rosettes are self-organizing, circular multicellular communities that initiate developmental processes, like organogenesis and embryogenesis, in complex organisms. Their formation results from the active repositioning of adhered sister cells and is thought to distinguish multicellular organisms from unicellular ones. Though common in eukaryotes, this multicellular behavior has not been reported in bacteria. In this study, we found that Escherichia coli forms rosettes by active sister-cell repositioning. After division, sister cells "fold" to actively align at the 2- and 4-cell stages of clonal division, thereby producing rosettes with characteristic quatrefoil configuration. Analysis revealed that folding follows an angular random walk, composed of ~1 µm strokes and directional randomization. We further showed that this motion was produced by the flagellum, the extracellular tail whose rotation generates swimming motility. Rosette formation was found to require de novo flagella synthesis suggesting it must balance the opposing forces of Ag43 adhesion and flagellar propulsion. We went on to show that proper rosette formation was required for subsequent morphogenesis of multicellular chains, rpoS gene expression, and formation of hydrostatic clonal-chain biofilms. Moreover, we found self-folding rosette-like communities in the standard motility assay, indicating that this behavior may be a general response to hydrostatic environments in E. coli. These findings establish self-organization of clonal rosettes by a prokaryote and have implications for evolutionary biology, synthetic biology, and medical microbiology.
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Affiliation(s)
- Devina Puri
- Department of Biomedical Engineering, Emory University and Georgia Institute of Technology, Atlanta, GA30322
| | - Kyle R. Allison
- Department of Biomedical Engineering, Emory University and Georgia Institute of Technology, Atlanta, GA30322
- Division of Infectious Diseases, Department of Medicine, Emory University School of Medicine, Atlanta, GA30322
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Shi X, Zarkan A. Bacterial survivors: evaluating the mechanisms of antibiotic persistence. MICROBIOLOGY (READING, ENGLAND) 2022; 168. [PMID: 36748698 DOI: 10.1099/mic.0.001266] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
Bacteria withstand antibiotic onslaughts by employing a variety of strategies, one of which is persistence. Persistence occurs in a bacterial population where a subpopulation of cells (persisters) survives antibiotic treatment and can regrow in a drug-free environment. Persisters may cause the recalcitrance of infectious diseases and can be a stepping stone to antibiotic resistance, so understanding persistence mechanisms is critical for therapeutic applications. However, current understanding of persistence is pervaded by paradoxes that stymie research progress, and many aspects of this cellular state remain elusive. In this review, we summarize the putative persister mechanisms, including toxin-antitoxin modules, quorum sensing, indole signalling and epigenetics, as well as the reasons behind the inconsistent body of evidence. We highlight present limitations in the field and underscore a clinical context that is frequently neglected, in the hope of supporting future researchers in examining clinically important persister mechanisms.
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Affiliation(s)
- Xiaoyi Shi
- Cambridge Centre for International Research, Cambridge CB4 0PZ, UK
| | - Ashraf Zarkan
- Department of Genetics, University of Cambridge, Cambridge CB2 3EH, UK
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Wen C, Zhu S, Li N, Luo X. Source apportionment and risk assessment of metal pollution in natural biofilms and surface water along the Lancang River, China. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 843:156977. [PMID: 35772562 DOI: 10.1016/j.scitotenv.2022.156977] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/19/2022] [Revised: 06/10/2022] [Accepted: 06/21/2022] [Indexed: 06/15/2023]
Abstract
Herein, surface water and periphytic biofilm samples were collected from 16 sites along the Lancang River, China, to assess the spatial distribution, enrichment factor (EF), potential ecological risk index (RI), and associated source-oriented health risks of heavy metal elements (As, Cd, Co, Cr, Cu, Ni, Pb, V, and Zn) in the samples. Results showed that the levels of heavy metals were significantly lower in the surface water samples than in the biofilm samples (one-way analysis of variance, p < 0.001). Moreover, 37.50 % of the biofilm samples were significantly polluted by these heavy metals with a mean EF of >5. As and V were the highest polluting metals, and the enrichment of Co and Ni were attributed to natural sources. RI assessment results showed a consistent ecological risk of As. Based on principal component analysis with multiple linear regression (PCA-MLR) and positive matrix factorization (PMF) models, the presence of heavy metal ions in the biofilm samples was largely attributed to industrial activities (PCA-MLR: 68.89 %; PMF: 76.39 %), followed by a mixed source of natural and agricultural activities (PCA-MLR: 18.12 %; PMF: 13.56 %), and traffic emissions (PCA-MLR: 12.99 %; PMF: 10.05 %). Both carcinogenic and noncarcinogenic risks for adults were negligible even though adults tended to be exposed to greater risk through ingestion. Source-specific risk evaluations indicated that industrial pollution was the most important source of health risks. Our findings highlight the potential threat of biofilms to the ecological and human health.
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Affiliation(s)
- Chen Wen
- Institute of International Rivers and Eco-Security, Yunnan University, Kunming 650500, China; Yunnan Key Laboratory of International Rivers and Transboundary Eco-Security, Kunming 650500, China
| | - Shijun Zhu
- Institute of International Rivers and Eco-Security, Yunnan University, Kunming 650500, China; Yunnan Key Laboratory of International Rivers and Transboundary Eco-Security, Kunming 650500, China
| | - Nihong Li
- Institute of International Rivers and Eco-Security, Yunnan University, Kunming 650500, China; Yunnan Key Laboratory of International Rivers and Transboundary Eco-Security, Kunming 650500, China
| | - Xia Luo
- Institute of International Rivers and Eco-Security, Yunnan University, Kunming 650500, China; Yunnan Key Laboratory of International Rivers and Transboundary Eco-Security, Kunming 650500, China.
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Middelhoek K, Magdanz V, Abelmann L, Khalil I. Drug-loaded IRONSperm clusters: modeling, wireless actuation, and ultrasound imaging. Biomed Mater 2022; 17. [PMID: 35985314 DOI: 10.1088/1748-605x/ac8b4b] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2022] [Accepted: 08/19/2022] [Indexed: 11/12/2022]
Abstract
Individual biohybrid microrobots have the potential to perform biomedical in vivo tasks such as remote-controlled drug and cell delivery and minimally invasive surgery. This work demonstrates the formation of biohybrid sperm-templated clusters under the influence of an external magnetic field and essential functionalities for wireless actuation and drug delivery. Ferromagnetic nanoparticles are electrostatically assembled around dead sperm cells, and the resulting nanoparticle-coated cells are magnetically assembled into threedimensional biohybrid clusters. The aim of this clustering is threefold: First, to enable rolling locomotion on a nearby solid boundary using a rotating magnetic field; second, to allow for noninvasive localization; third, to load the cells inside the cluster with drugs for targeted delivery. A magneto-hydrodynamic model captures the rotational response of the clusters in a viscous fluid, and predicts an upper bound for their step-out frequency, which is independent of their volume or aspect ratio. Below the step-out frequency, the rolling velocity of the clusters increases nonlinearly with their perimeter and actuation frequency. During rolling locomotion, the clusters are localized using ultrasound at a relatively large distance, which makes these biohybrid clusters promising for deep-tissue applications. Finally, we show that the estimated drug load scales with the number of cells in the cluster and can be retained for more than 10 hours. The aggregation of microrobots enables them to collectively roll in a predictable way in response to an external rotating magnetic field, and enhances ultrasound detectability and drug loading capacity compared to the individual microrobots. The favorable features of biohybrid microrobot clusters place emphasis on the importance of the investigation and development of collective microrobots and their potential for in vivo applications.
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Affiliation(s)
- Kaz Middelhoek
- Biomechanical Engineering , University of Twente, University of Twente, Enschede, Enschede, 7500 AE, NETHERLANDS
| | - Veronika Magdanz
- Barcelona Institute of Science and Technology, Institute for Bioengineering in Catalonia, Barcelona, Barcelona, Catalunya, 08028, SPAIN
| | - Leon Abelmann
- MESA Research Institute, University of Twente, SMI, PO Box 217, 7500 AE Enschede, THE NETHERLANDS, Enschede, Overijssel, 7500 AE, NETHERLANDS
| | - Islam Khalil
- Biomechanical Engineering , University of Twente, University of Twente, Enschede, Enschede, 7500 AE, NETHERLANDS
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Selective drivers of simple multicellularity. Curr Opin Microbiol 2022; 67:102141. [PMID: 35247708 DOI: 10.1016/j.mib.2022.102141] [Citation(s) in RCA: 24] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2021] [Revised: 02/08/2022] [Accepted: 02/09/2022] [Indexed: 12/21/2022]
Abstract
In order to understand the evolution of multicellularity, we must understand how and why selection favors the first steps in this process: the evolution of simple multicellular groups. Multicellularity has evolved many times in independent lineages with fundamentally different ecologies, yet no work has yet systematically examined these diverse selective drivers. Here we review recent developments in systematics, comparative biology, paleontology, synthetic biology, theory, and experimental evolution, highlighting ten selective drivers of simple multicellularity. Our survey highlights the many ecological opportunities available for simple multicellularity, and stresses the need for additional work examining how these first steps impact the subsequent evolution of complex multicellularity.
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Alamcheril MP, Jain U, Babu SB. Can playing Spirograph lead to an ordered structure in self-propelled particles? SOFT MATTER 2021; 17:9507-9513. [PMID: 34617553 DOI: 10.1039/d1sm01050f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
Understanding the local dynamics of microorganisms infecting a cell could help us develop efficient strategies to counter their aggregation. In the present study we have introduced a simple model of self-propelled particles (SPPs) with constant linear velocity, both in 2 and 3 dimensions, which captures the essential features of a microorganism's aggregation as well the dynamics around an attractive point (AP). The static behavior shows the presence of an icosahedral structure for a finite number of SPPs, and a hexagonal closed packed structure for an infinite number of SPPs, which was confirmed using Steinhardt bond order parameters for a 3-dimensional model. For a single SPP the dynamic behaviour involves the formation of orbits around the AP, which can be categorised into three dynamical regions based on the strength of coupling between the AP and SPP. For weak coupling we observe a rosette-like trajectory reminiscent of the pattern formed by the Spirograph toy. For intermediate coupling, circular trajectories were observed, and for very strong coupling the SPP was static and was always aligned with the AP. The radial distance from the AP to SPP was determined by the angular velocities of the SPP for the rosette-like region whereas for the circular and static regions, it was determined by the coupling constant. Even for a finite number of SPPs we observed the same behavior as long as the SPPs could rotate around the AP without colliding with each other.
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Affiliation(s)
- Mephin Philip Alamcheril
- Out of Equilibrium Group, Department of Physics, Indian Institute of Technology Delhi, Hauz Khas, New Delhi 110016, India.
| | - Umang Jain
- Out of Equilibrium Group, Department of Physics, Indian Institute of Technology Delhi, Hauz Khas, New Delhi 110016, India.
| | - Sujin B Babu
- Out of Equilibrium Group, Department of Physics, Indian Institute of Technology Delhi, Hauz Khas, New Delhi 110016, India.
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