A precision compost strategy aligning composts and application methods with target crops and growth environments can increase global food production

Reducing carbon and nitrogen loss by shortening the composting duration based on seed germination index (SCD@GI): Feasibilities and challenges

Addressing carbon (C) and nitrogen (N) losses through composting has emerged as a critical environmental challenge recently, and how to mitigate these losses has been a hot topic across the world. As the emissions of carbonaceous and nitrogenous gases were closely correlated with the composting process, the feasibility of composting duration shortening on C and N loss needs to be explored. Therefore, the goal of this paper is to find evidence-based approaches to reduce composting duration, utilizing the seed germination index as a metric (SCD@GI), for assessing its efficiency on C and N loss reductions as well as compost quality. Our findings reveal that the terminal seed germination index (GI) frequently surpassed the necessary benchmarks, with a significant portion of trials achieving the necessary GI within 60 % of the standard duration. Notably, an SCD@GI of 80 % resulted in a reduction of CO2 and NH3 by 21.4 % and 21.9 %, respectively, surpassing the effectiveness of the majority of current mitigation strategies. Furthermore, compost quality, maturity specifically, remained substantially unaffected at a GI of 80 %, with the composting process maintaining adequate thermophilic conditions to ensure hygienic quality and maturity. This study also highlighted the need for further studies, including the establishment of uniform GI testing standards and comprehensive life cycle analyses for integrated composting and land application practices. The insights gained from this study would offer new avenues for enhancing C and N retention during composting, contributing to the advancement of high-quality compost production within the framework of sustainable agriculture.

Microbial Sources and Sinks of Nitrous Oxide during Organic Waste Composting

Composting is widely used for organic waste management and is also a major source of nitrous oxide (N2O) emission. New insight into microbial sources and sinks is essential for process regulation to reduce N2O emission from composting. This study used genome-resolved metagenomics to decipher the genomic structures and physiological behaviors of individual bacteria for N2O sources and sinks during composting. Results showed that several nosZ-lacking denitrifiers in feedstocks drove N2O emission at the beginning of the composting. Such emission became negligible at the thermophilic stage, as high temperatures inhibited all denitrifiers for N2O production except for those containing nirK. The nosZ-lacking denitrifiers were notably enriched to increase N2O production at the cooling stage. Nevertheless, organic biodegradation limited energy availability for chemotaxis and flagellar assembly to restrain nirKS-containing denitrifiers for nitrate reduction toward N2O sources but insignificantly interrupt norBC- and nosZ-containing bacteria (particularly nosZ-containing nondenitrifiers) for N2O sinks by capturing N2O and nitric oxide (NO) for energy production, thereby reducing N2O emission at the mature stage. Furthermore, nosZII-type bacteria included all nosZ-containing nondenitrifiers and dominated N2O sinks. Thus, targeted strategies can be developed to restrict the physiological behaviors of nirKS-containing denitrifiers and expand the taxonomic distribution of nosZ for effective N2O mitigation in composting.

Green Waste Compost Impacts Microbial Functions Related to Carbohydrate Use and Active Dispersal in Plant Pathogen-Infested Soil

The effects of compost on physical and chemical characteristics of soil are well-studied but impacts on soil microbiomes are poorly understood. This research tested effects of green waste compost on bacterial communities in soil infested with the plant pathogen Fusarium oxysporum. Compost was added to pathogen-infested soil and maintained in mesocosms in a greenhouse experiment and replicated growth chamber experiments. Bacteria and F. oxysporum abundance were quantified using quantitative PCR. Taxonomic and functional characteristics of bacterial communities were measured using shotgun metagenome sequencing. Compost significantly increased bacterial abundance 8 weeks after amendment in one experiment. Compost increased concentrations of chemical characteristics of soil, including phosphorus, potassium, organic matter, and pH. In all experiments, compost significantly reduced abundance of F. oxysporum and altered the taxonomic composition of soil bacterial communities. Sixteen bacterial genera were significantly increased from compost in every experiment, potentially playing a role in pathogen suppression. In all experiments, there was a consistent negative effect of compost on functions related to carbohydrate use and a positive effect on bacteria with flagella. Results from this work demonstrate that compost can reduce the abundance of soilborne plant pathogens and raise questions about the role of microbes in plant pathogen suppression.

Addition of cellulose and hemicellulose degrading microorganisms intensified nitrous oxide emission during composting

This study aims to clarify the mechanisms underlying effects of inoculating cellulose and hemicellulose-degrading microorganisms on nitrous oxide (N2O) emissions during composting with silkworm excrement and mulberry branches. Inoculation with cellulose and hemicellulose-degrading microorganisms resulted in significant increases of total N2O emission by 10.4 ± 2.0 % (349.1 ± 6.2 mg N kg-1 dw) and 26.7 ± 2.1 % (400.6 ± 6.8 mg N kg-1 dw), respectively, compared to the control (316.3 ± 3.6 mg N kg-1 dw). The stimulation of N2O emission was attributed to the enhanced contribution of ammonia-oxidizing bacteria (AOB) and denitrifying bacteria to N2O production, as evidenced by the increased AOB amoA and denitrifying nirK gene abundances. Moreover, microbial inoculation stimulated N2O reduction to N2 owing to increased abundances of nosZⅠ and nosZⅠⅠ genes. These findings highlight the necessity to develop cost-effective and environmentally friendly strategies to reduce N2O emissions when cellulose and hemicellulose-degrading microorganisms are inoculated during composting.

A systematic review of life-cycle GHG emissions from intensive pig farming: Accounting and mitigation

Pork accounts for approximately 35 % of the global meat supply, with approximately 747 million tons of CO2e greenhouse gas (GHG) emissions annually. To meet the increasing demand for pork, intensive farming is becoming the priority rearing system owing to its higher productivity. Given the climate transformation ambitions of the pig industry but the lack of knowledge and data, we conducted a systematic review of studies published in the period of 2010-2022 from a life-cycle perspective, with a focus on greenhouse gas emissions accounting and mitigation. The significant variations in systematic harmonized global warming intensities (GWIs) can be primarily attributed to differences in accounting approaches, activity data, technologies and geographical conditions. To understand more, we broke down the entire life cycle and revealed the underlying reasons for modelling mechanisms and data from the main emitters (e.g., feeding, pig rearing, and manure management). These findings are expected to support and improve the transparency, consistency, and comprehensiveness of life-cycle GHG emissions accounting in pig farming. Potential mitigation measures were also reviewed and discussed to provide insights to support the sustainable development of the pig industry.

Mechanisms of mitigating nitrous oxide emission during composting by biochar and calcium carbonate addition

To investigate the mechanisms underlying effects of biochar and calcium carbonate (CaCO3) addition on nitrous oxide (N2O) emissions during composting, this paper conducted a systematic study on mineral nitrogen (N), dissolved organic carbon (C) and N, sources of N2O, and functional genes. Biochar and CaCO3 addition decreased N2O emissions by 26.5-47.8% (9.5-96.9 mg N kg-1 dw) and 13.9-37.4% (12.0-121.0 mg N kg-1 dw) compared to the control (14.3-179.7 mg N kg-1 dw), respectively. The mitigation of N2O emission was caused by decreased contribution of ammonia-oxidizing bacteria (AOB) and fungi to N2O production due to diminished AOB amoA, fungal nirK and P450 gene abundances, or by stimulated N2O reduction to N2 owing to increased abundances of nosZⅠ and nosZⅠⅠ genes under biochar and CaCO3 addition. The findings suggest that the addition of biochar or CaCO3 is effective in mitigating N2O emission during composting.

Impacts of digestate-based compost on soil property and nutrient availability

The treatment of digestate from food waste (DFW) has emerged as the bottleneck for food waste anaerobic digestion. DFW generally contains abundant nutrients that can be recycled by composting. However, the effect of DFW-based compost on soil improvement has not been extensively explored. In this study, soil properties were improved by adding various amounts of DFW-based compost, and the growth conditions of Pak choi were monitored. The results indicated that the DFW-based compost could provide nitrogen, calcium, magnesium, and organic matter, thereby enhancing the growth of Pak choi, accumulating chlorophyll, and improving photosynthesis efficiency. As the amount of added DFW-based compost increased from 0% to 20%, the fresh biomass, leaf weight, and root weight of Pak choi increased by 242%, 262%, and 99%, respectively. The total chlorophyll content was 2.62 mg g-1 in control and increased to 12.45 mg g-1 in the group with 20% DFW-based compost, benefiting the photochemical efficiency of Pak choi. However, the growth was inhibited when the addition amount exceeded 20%, potentially due to excessive nutrient supplementation. Overall, the addition of 20% of DFW-based compost was suggested to promote the growth of Pak choi by providing proper nutrients.

Inter-bacterial mutualism promoted by public goods in a system characterized by deterministic temperature variation

Mutualism is commonly observed in nature but not often reported for bacterial communities. Although abiotic stress is thought to promote microbial mutualism, there is a paucity of research in this area. Here, we monitor microbial communities in a quasi-natural composting system, where temperature variation (20 °C-70 °C) is the main abiotic stress. Genomic analyses and culturing experiments provide evidence that temperature selects for slow-growing and stress-tolerant strains (i.e., Thermobifida fusca and Saccharomonospora viridis), and mutualistic interactions emerge between them and the remaining strains through the sharing of cobalamin. Comparison of 3000 bacterial pairings reveals that mutualism is common (~39.1%) and competition is rare (~13.9%) in pairs involving T. fusca and S. viridis. Overall, our work provides insights into how high temperature can favour mutualism and reduce competition at both the community and species levels.

Drip fertigation sustains crop productivity while mitigating reactive nitrogen losses in Chinese agricultural systems: Evidence from a meta-analysis

Drip fertigation can synchronize the supply of nutrients and water for crop demand, offering the potential for minimizing negative environmental impacts and sustaining crop productivity. However, there are no comprehensive evaluations on performances of drip fertigation on environmental nitrogen (N) losses and crop productivity, nationwide. Here, a meta-analysis was performed to quantify overall effects of drip fertigation on N losses and crop productivity in Chinese agricultural systems based on 443 observations from 42 field studies. The results showed that drip fertigation significantly increased crop yields by 9.8 % and slightly increased soil NO emission by 13.9 % compared to the traditional irrigation and fertilization practices (e.g. flooding/furrow irrigation and N broadcasting), while significantly decreasing NH3 volatilization by 14.2 %, soil N2O emission by 28.1 % and NO3--N leaching loss by 71.2 %. There were significant mitigation potentials of environmental N losses by drip fertigation for cereal cropping systems, not for horticultural crops in terms of soil NO emission and not for cotton in terms of NH3 volatilization. Non significant promotion effect on NO emission and significant reduction effects on the other all kinds of environmental N losses by drip fertigation were observed for alkaline soils (pH > 7.3) and coarse-textured soils. In addition, the use of different fertilizer sources and/or soil amendments have shown in popularity as strategies to offset the negative feedback associated with agricultural N losses, no direct synthetic result was shown in drip-fertigated soils. We synthesized 19 studies so as to assess the potential mitigation options for further minimizing N losses in drip fertigation systems, which suggested that deleterious environmental pollution could be further reduced while still achieving high crop yields with a combination of enhanced-efficiency fertilizers (e.g. nitrification or urease inhibitors) or soil amendments (e.g. biochar or straw) to drip fertigation systems.

Co-occurrence pattern of ARGs and N-functional genes in the aerobic composting system with initial elevated temperature

Animal manure is known to harbor antibiotic resistance genes (ARGs). Aerobic composting is a prevalent cost-effective and sustainable method to treat animal waste. However, the effect of initially elevated temperature on antibiotic resistome during the composting process is unclear. In this study composting was subjected to initial external heating (EHC) for a period of 5 days compared to conventional composting (CC). After composting ARGs abundance was significantly reduced by 2.43 log in EHC and 1.95 log in CC. Mobile genetic elements (MGEs) also exhibited a reduction of 1.95 log in EHC and 1.49 log in CC. However, during the cooling phase, the genes resisting macrolide lincosamide and streptogramin B (MLSB) rebounded by 0.04 log in CC. The potential human pathogenic bacteria Pseudomonas (41.5-61.5%) and Actinobacteria (98.4-98.8%) were significantly reduced in both treatments and the bulk of targeted antibiotics were eliminated by 80.74% in EHC and 68.98% in CC. ARGs and N-functional genes (NFGs), mainly denitrification genes, were carried by the same microbial species, such as Corynebacterium sp. and Bacillus sp., of the dominant phylum. Redundancy analysis (RDA) revealed that CC microbial communities played a key role in the enrichment of ARGs while in EHC the variation of ARGs was attributed to the composting temperature. The number of high-risk ARGs was also lower in EHC (4) compared with CC (6) on day 30. These results provide insight into the effects of an initially enhanced temperature on ARGs removal and the relationship between ARGs and NFGs during the composting process.

Pretreatment and composting technology of agricultural organic waste for sustainable agricultural development

With the continuous development of agriculture, Agricultural organic waste (AOW) has become the most abundant renewable energy on earth, and it is a hot spot of research in recent years to realize the recycling of AOW to achieve sustainable development of agricultural production. However, lignocellulose, which is difficult to degrade in AOW, greenhouse gas emissions, and pile pathogenic fungi and insect eggs are the biggest obstacles to its return to land use. In response to the above problems researchers promote organic waste recycling by pretreating AOW, controlling composting conditions and adding other substances to achieve green return of AOW to the field and promote the development of agricultural production. This review summarizes the ways of organic waste treatment, factors affecting composting and problems in composting by researchers in recent years, with a view to providing research ideas for future related studies.

Insights into carbon loss reduction during aerobic composting of organic solid waste: A meta-analysis and comprehensive literature review

Carbon neutrality is now receiving global concerns for the sustainable development of human societies, of which how to reduce greenhouse gases (GHGs) emissions and enhance carbon conservation and sequestration becomes increasingly critical. Therefore, this study conducted a meta-analysis and literature review to assess carbon loss and to explore the main factors that impact carbon loss during organic solid waste (OSW) composting. The results indicated that over 40 % of carbon was lost through composting, mainly as CO₂-C and merely as CH₄-C. Experimental scale, feedstock varieties, composting systems, etc., all impacted the carbon loss, and there was generally higher carbon loss under optimal conditions (i.e., C/N ratio (15-25), pH (6.5-7.5), moisture content (65-75 %)). Most mitigation strategies in conventional composting (CC) systems (e.g., additive supplementary, feedstock adjustment, and optimized aeration, etc.) barely mediated the TC and CO₂-C loss but dramatically reduced the emission of CH₄-C through composting. Among them, feedstock adjustment by elevating the feedstock C/N ratio effectively reduced the TC loss, and chemical additives facilitated the conservation of both carbon and nitrogen. By comparison, there was generally higher carbon loss in the novel composting systems (e.g. hyperthermophilic and electric field enhanced composting, etc.). However, the impacts of different mitigation strategies and novel composting systems on carbon loss reduction through composting were probably underestimated for the inappropriate evaluation methods (composting period-dependent instead of maturity originated). Therefore, further studies are needed to explore carbon transformation through composting, to establish methods and standards for carbon loss evaluation, and to develop novel techniques and systems for enhanced carbon conservation through composting. Overall, the results of this study could provide a reference for carbon-friendly composting for future OSW management under the background of global carbon neutrality.

Effect of phosphate on cadmium immobilized by microbial-induced carbonate precipitation: Mobilization or immobilization?

Microbial-induced carbonate precipitation (MICP) is a promising technology to immobilize/remediate heavy metals (HMs) like cadmium (Cd). However, the long-term stability of MICP-immobilized HMs is unclear, especially in farmland where chemical fertilization is necessary. Therefore, we performed MICP treatment on soils contaminated with various Cd compounds (CdCO₃, CdS, and CdCl₂) and added diammonium phosphate (DAP) to explore the impact of phosphate on the MICP-immobilized Cd. The results showed that MICP treatment was practical to immobilize the exchangeable Cd but to mobilize the carbonate and Fe/Mn oxide-bound Cd. After applying DAP, soil pH declined due to ammonium nitrification. At high P/Ca molar ratios (1/2 and 1), partial previously immobilized Cd was released due to the carbonate dissolution. Contrarily, exchangeable Cd transformed to less mobilizable Fe/Mn oxide-bound at low P/Ca molar ratios (1/4 and 1/8). Meanwhile, other treatments were also helpful in avoiding the release of immobilized Cd, such as applying non-ammonium phosphate and adding lime material after soil acidification. Our investigation suggested that the long-term stability of HMs in remediated sites should be carefully evaluated, especially in agricultural areas with phosphate and nitrogen fertilizer input.

An evaluation of homeostatic plasticity for ecosystems using an analytical data science approach

The natural world is constantly changing, and planetary boundaries are issuing severe warnings about biodiversity and cycles of carbon, nitrogen, and phosphorus. In other views, social problems such as global warming and food shortages are spreading to various fields. These seemingly unrelated issues are closely related, but it can be said that understanding them in an integrated manner is still a step away. However, progress in analytical technologies has been recognized in various fields and, from a microscopic perspective, with the development of instruments including next-generation sequencers (NGS), nuclear magnetic resonance (NMR), gas chromatography-mass spectrometry (GC/MS), and liquid chromatography-mass spectrometry (LC/MS), various forms of molecular information such as genome data, microflora structure, metabolome, proteome, and lipidome can be obtained. The development of new technology has made it possible to obtain molecular information in a variety of forms. From a macroscopic perspective, the development of environmental analytical instruments and environmental measurement facilities such as satellites, drones, observation ships, and semiconductor censors has increased the data availability for various environmental factors. Based on these background, the role of computational science is to provide a mechanism for integrating and understanding these seemingly disparate data sets. This review describes machine learning and the need for structural equations and statistical causal inference of these data to solve these problems. In addition to introducing actual examples of how these technologies can be utilized, we will discuss how to use these technologies to implement environmentally friendly technologies in society.