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For: Liu HP, Xiao SJ, Wu N, Wang D, Liu YC, Zhou CW, Liu QY, Yang RB, Jiang WK, Liang QQ, Wangjiu, Zhang C, Gong JH, Yuan XH, Mou ZB. The sequence and de novo assembly of Oxygymnocypris stewartii genome. Sci Data 2019;6:190009. [PMID: 30720802 DOI: 10.1038/sdata.2019.9] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2018] [Accepted: 12/06/2018] [Indexed: 01/07/2023]  Open
Number Cited by Other Article(s)
1
Chen P, Zhong Z, Jin WX, Sun J, Sun SC. Chromosome-scale assembly of Artemia tibetiana genome, first aquatic invertebrate genome from Tibet Plateau. Sci Data 2025;12:777. [PMID: 40355476 PMCID: PMC12069563 DOI: 10.1038/s41597-025-05136-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2025] [Accepted: 05/01/2025] [Indexed: 05/14/2025]  Open
2
Liu B, Gao L, Liu Y, He K, Li H, Feng T, Han M, Zhang C. The First Genome-Wide Survey Analysis of the Tibetan Plateau Tetraploid Schizothorax curvilabiatus Reveals Its Microsatellite Characteristics and Phylogenetic Relationships. Genes (Basel) 2025;16:491. [PMID: 40428313 PMCID: PMC12111650 DOI: 10.3390/genes16050491] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2025] [Revised: 04/23/2025] [Accepted: 04/23/2025] [Indexed: 05/29/2025]  Open
3
Liang X, Wang W, Huang J, Luo M, Wangdui N, Sun C, Lu J. A chromosome-level genome assembly of big-barbel schizothorcin, Schizothorax macropogon. Sci Data 2024;11:1402. [PMID: 39702420 DOI: 10.1038/s41597-024-04266-0] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2024] [Accepted: 12/09/2024] [Indexed: 12/21/2024]  Open
4
Kim KR, Park SY, Jeong JH, Hwang Y, Kim H, Sung MS, Yu JN. Genetic Diversity and Population Structure of Rhodeus uyekii in the Republic of Korea Revealed by Microsatellite Markers from Whole Genome Assembly. Int J Mol Sci 2024;25:6689. [PMID: 38928393 PMCID: PMC11203500 DOI: 10.3390/ijms25126689] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2024] [Revised: 06/13/2024] [Accepted: 06/14/2024] [Indexed: 06/28/2024]  Open
5
Chen L, Li C, Li B, Zhou X, Bai Y, Zou X, Zhou Z, He Q, Chen B, Wang M, Xue Y, Jiang Z, Feng J, Zhou T, Liu Z, Xu P. Evolutionary divergence of subgenomes in common carp provides insights into speciation and allopolyploid success. FUNDAMENTAL RESEARCH 2024;4:589-602. [PMID: 38933191 PMCID: PMC11197550 DOI: 10.1016/j.fmre.2023.06.011] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2022] [Revised: 06/29/2023] [Accepted: 06/30/2023] [Indexed: 06/28/2024]  Open
6
Zhang S, Song Y, Liu M, Yuan Z, Zhang M, Zhang H, Seim I, Fan G, Liu S, Liu X. Chromosome-level genome of butterflyfish unveils genomic features of unique colour patterns and morphological traits. DNA Res 2023;30:dsad018. [PMID: 37590994 PMCID: PMC10468729 DOI: 10.1093/dnares/dsad018] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2023] [Revised: 07/06/2023] [Accepted: 08/17/2023] [Indexed: 08/19/2023]  Open
7
He J, He Z, Yang D, Ma Z, Chen H, Zhang Q, Deng F, Ye L, Pu Y, Zhang M, Yang S, Yang S, Yan T. Genetic Variation in Schizothorax kozlovi Nikolsky in the Upper Reaches of the Chinese Yangtze River Based on Genotyping for Simplified Genome Sequencing. Animals (Basel) 2022;12:ani12172181. [PMID: 36077902 PMCID: PMC9454844 DOI: 10.3390/ani12172181] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2022] [Revised: 08/16/2022] [Accepted: 08/19/2022] [Indexed: 11/23/2022]  Open
8
Tian F, Liu S, Zhou B, Tang Y, Zhang Y, Zhang C, Zhao K. Chromosome-level genome of Tibetan naked carp (Gymnocypris przewalskii) provides insights into Tibetan highland adaptation. DNA Res 2022;29:6647840. [PMID: 35861387 PMCID: PMC9326183 DOI: 10.1093/dnares/dsac025] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2022] [Indexed: 11/13/2022]  Open
9
Zhu T, Li X, Wu X, Yang D. Temperature Acclimation Alters the Thermal Tolerance and Intestinal Heat Stress Response in a Tibetan Fish Oxygymnocypris stewarti. Front Microbiol 2022;13:898145. [PMID: 35814681 PMCID: PMC9261780 DOI: 10.3389/fmicb.2022.898145] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2022] [Accepted: 05/27/2022] [Indexed: 11/13/2022]  Open
10
Li R, Wang X, Bian C, Gao Z, Zhang Y, Jiang W, Wang M, You X, Cheng L, Pan X, Yang J, Shi Q. Whole-Genome Sequencing of Sinocyclocheilus maitianheensis Reveals Phylogenetic Evolution and Immunological Variances in Various Sinocyclocheilus Fishes. Front Genet 2021;12:736500. [PMID: 34675964 PMCID: PMC8523889 DOI: 10.3389/fgene.2021.736500] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2021] [Accepted: 09/06/2021] [Indexed: 12/02/2022]  Open
11
Yang L, Wang Y, Sun N, Chen J, He S. Genomic and functional evidence reveals convergent evolution in fishes on the Tibetan Plateau. Mol Ecol 2021;30:5752-5764. [PMID: 34516715 DOI: 10.1111/mec.16171] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2019] [Revised: 08/18/2021] [Accepted: 09/02/2021] [Indexed: 12/12/2022]
12
Sequencing an F1 hybrid of Silurus asotus and S. meridionalis enabled the assembly of high-quality parental genomes. Sci Rep 2021;11:13797. [PMID: 34226617 PMCID: PMC8257616 DOI: 10.1038/s41598-021-93257-x] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2021] [Accepted: 06/16/2021] [Indexed: 01/27/2023]  Open
13
Lei Y, Yang L, Zhou Y, Wang C, Lv W, Li L, He S. Hb adaptation to hypoxia in high-altitude fishes: Fresh evidence from schizothoracinae fishes in the Qinghai-Tibetan Plateau. Int J Biol Macromol 2021;185:471-484. [PMID: 34214574 DOI: 10.1016/j.ijbiomac.2021.06.186] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2021] [Accepted: 06/27/2021] [Indexed: 10/21/2022]
14
Tong C, Li M, Tang Y, Zhao K. Genomic Signature of Shifts in Selection and Alkaline Adaptation in Highland Fish. Genome Biol Evol 2021;13:evab086. [PMID: 33892511 PMCID: PMC8126726 DOI: 10.1093/gbe/evab086] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 04/19/2021] [Indexed: 12/19/2022]  Open
15
Chen C, Fu R, Wang J, Li X, Chen X, Li Q, Lu D. Genome sequence and transcriptome profiles of pathogenic fungus Paecilomyces penicillatus reveal its interactions with edible fungus Morchella importuna. Comput Struct Biotechnol J 2021;19:2607-2617. [PMID: 34025947 PMCID: PMC8120865 DOI: 10.1016/j.csbj.2021.04.065] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/28/2020] [Revised: 04/23/2021] [Accepted: 04/24/2021] [Indexed: 12/15/2022]  Open
16
Peng Y, Li H, Liu Z, Zhang C, Li K, Gong Y, Geng L, Su J, Guan X, Liu L, Zhou R, Zhao Z, Guo J, Liang Q, Li X. Chromosome-level genome assembly of the Arctic fox (Vulpes lagopus) using PacBio sequencing and Hi-C technology. Mol Ecol Resour 2021;21:2093-2108. [PMID: 33829635 DOI: 10.1111/1755-0998.13397] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2020] [Revised: 03/28/2021] [Accepted: 03/30/2021] [Indexed: 10/21/2022]
17
Chen L, Li B, Chen B, Li C, Zhou Z, Zhou T, Yang W, Xu P. Chromosome-level genome of Poropuntius huangchuchieni provides a diploid progenitor-like reference genome for the allotetraploid Cyprinus carpio. Mol Ecol Resour 2021;21:1658-1669. [PMID: 33624395 DOI: 10.1111/1755-0998.13365] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2020] [Revised: 01/27/2021] [Accepted: 02/16/2021] [Indexed: 11/27/2022]
18
Feng X, Jia Y, Zhu R, Li K, Guan Z, Chen Y. Comparative transcriptome analysis of scaled and scaleless skins in Gymnocypris eckloni provides insights into the molecular mechanism of scale degeneration. BMC Genomics 2020;21:835. [PMID: 33246415 PMCID: PMC7694923 DOI: 10.1186/s12864-020-07247-w] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2020] [Accepted: 11/18/2020] [Indexed: 11/30/2022]  Open
19
Yuan D, Chen X, Gu H, Zou M, Zou Y, Fang J, Tao W, Dai X, Xiao S, Wang Z. Chromosomal genome of Triplophysa bleekeri provides insights into its evolution and environmental adaptation. Gigascience 2020;9:giaa132. [PMID: 33231676 PMCID: PMC7684707 DOI: 10.1093/gigascience/giaa132] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2020] [Revised: 09/18/2020] [Accepted: 10/30/2020] [Indexed: 01/27/2023]  Open
20
Lei Y, Yang L, Jiang H, Chen J, Sun N, Lv W, He S. Recent genome duplications facilitate the phenotypic diversity of Hb repertoire in the Cyprinidae. SCIENCE CHINA-LIFE SCIENCES 2020;64:1149-1164. [PMID: 33051703 DOI: 10.1007/s11427-020-1809-0] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/29/2020] [Accepted: 08/28/2020] [Indexed: 12/11/2022]
21
Liu Q, Wang X, Xiao Y, Zhao H, Xu S, Wang Y, Wu L, Zhou L, Du T, Lv X, Li J. Sequencing of the black rockfish chromosomal genome provides insight into sperm storage in the female ovary. DNA Res 2020;26:453-464. [PMID: 31711192 PMCID: PMC6993816 DOI: 10.1093/dnares/dsz023] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2019] [Accepted: 11/09/2019] [Indexed: 01/09/2023]  Open
22
Genomic signature of accelerated evolution in a saline-alkaline lake-dwelling Schizothoracine fish. Int J Biol Macromol 2020;149:341-347. [DOI: 10.1016/j.ijbiomac.2020.01.207] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2019] [Revised: 12/21/2019] [Accepted: 01/15/2020] [Indexed: 12/18/2022]
23
Zhou C, Xiao S, Liu Y, Mou Z, Zhou J, Pan Y, Zhang C, Wang J, Deng X, Zou M, Liu H. Comprehensive transcriptome data for endemic Schizothoracinae fish in the Tibetan Plateau. Sci Data 2020;7:28. [PMID: 31964888 PMCID: PMC6972879 DOI: 10.1038/s41597-020-0361-6] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2019] [Accepted: 12/18/2019] [Indexed: 01/05/2023]  Open
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