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For: Li Y, Yi M, Zou X. The linear interplay of intrinsic and extrinsic noises ensures a high accuracy of cell fate selection in budding yeast. Sci Rep 2014;4:5764. [PMID: 25042292 PMCID: PMC4104398 DOI: 10.1038/srep05764] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2014] [Accepted: 07/03/2014] [Indexed: 01/14/2023]  Open
Number Cited by Other Article(s)
1
Fu Y, Lu T, Zhou M, Liu D, Gan Q, Wang G. Effect of color cross-correlated noise on the growth characteristics of tumor cells under immune surveillance. MATHEMATICAL BIOSCIENCES AND ENGINEERING : MBE 2023;20:21626-21642. [PMID: 38124613 DOI: 10.3934/mbe.2023957] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/23/2023]
2
Alahdal M, Sun D, Duan L, Ouyang H, Wang M, Xiong J, Wang D. Forecasting sensitive targets of the kynurenine pathway in pancreatic adenocarcinoma using mathematical modeling. Cancer Sci 2021;112:1481-1494. [PMID: 33523522 PMCID: PMC8019197 DOI: 10.1111/cas.14832] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2020] [Revised: 01/19/2021] [Accepted: 01/26/2021] [Indexed: 12/17/2022]  Open
3
Wang H, Cheng X, Duan J, Kurths J, Li X. Likelihood for transcriptions in a genetic regulatory system under asymmetric stable Lévy noise. CHAOS (WOODBURY, N.Y.) 2018;28:013121. [PMID: 29390613 DOI: 10.1063/1.5010026] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
4
Liu Y, Zou X. Mathematical modeling and quantitative analysis of HIV-1 Gag trafficking and polymerization. PLoS Comput Biol 2017;13:e1005733. [PMID: 28922356 PMCID: PMC5619834 DOI: 10.1371/journal.pcbi.1005733] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2016] [Revised: 09/28/2017] [Accepted: 08/22/2017] [Indexed: 12/30/2022]  Open
5
Several Indicators of Critical Transitions for Complex Diseases Based on Stochastic Analysis. COMPUTATIONAL AND MATHEMATICAL METHODS IN MEDICINE 2017;2017:7560758. [PMID: 28835768 PMCID: PMC5556999 DOI: 10.1155/2017/7560758] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/18/2017] [Revised: 06/19/2017] [Accepted: 06/19/2017] [Indexed: 12/18/2022]
6
Jin S, Wu FX, Zou X. Domain control of nonlinear networked systems and applications to complex disease networks. ACTA ACUST UNITED AC 2017. [DOI: 10.3934/dcdsb.2017091] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
7
Gui R, Liu Q, Yao Y, Deng H, Ma C, Jia Y, Yi M. Noise Decomposition Principle in a Coherent Feed-Forward Transcriptional Regulatory Loop. Front Physiol 2016;7:600. [PMID: 27965596 PMCID: PMC5127843 DOI: 10.3389/fphys.2016.00600] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2016] [Accepted: 11/17/2016] [Indexed: 01/12/2023]  Open
8
Transitions in a genetic transcriptional regulatory system under Lévy motion. Sci Rep 2016;6:29274. [PMID: 27411445 PMCID: PMC4944134 DOI: 10.1038/srep29274] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2016] [Accepted: 06/14/2016] [Indexed: 12/05/2022]  Open
9
de Franciscis S, Caravagna G, Mauri G, d’Onofrio A. Gene switching rate determines response to extrinsic perturbations in the self-activation transcriptional network motif. Sci Rep 2016;6:26980. [PMID: 27256916 PMCID: PMC4891709 DOI: 10.1038/srep26980] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2015] [Accepted: 05/11/2016] [Indexed: 01/01/2023]  Open
10
Wang D, Jin S, Zou X. Crosstalk between pathways enhances the controllability of signalling networks. IET Syst Biol 2016;10:2-9. [PMID: 26816393 DOI: 10.1049/iet-syb.2014.0061] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]  Open
11
Zhang W, Zou X. A New Method for Detecting Protein Complexes based on the Three Node Cliques. IEEE/ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS 2015;12:879-886. [PMID: 26357329 DOI: 10.1109/tcbb.2014.2386314] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
12
Zhang W, Tian T, Zou X. Negative feedback contributes to the stochastic expression of the interferon-β gene in virus-triggered type I interferon signaling pathways. Math Biosci 2015;265:12-27. [PMID: 25892253 DOI: 10.1016/j.mbs.2015.04.003] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2014] [Revised: 04/05/2015] [Accepted: 04/06/2015] [Indexed: 12/28/2022]
13
Optimal control strategy for abnormal innate immune response. COMPUTATIONAL AND MATHEMATICAL METHODS IN MEDICINE 2015;2015:386235. [PMID: 25949271 PMCID: PMC4407413 DOI: 10.1155/2015/386235] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/18/2014] [Revised: 03/20/2015] [Accepted: 03/22/2015] [Indexed: 12/22/2022]
14
Xiao X, Zhang W, Zou X. A new asynchronous parallel algorithm for inferring large-scale gene regulatory networks. PLoS One 2015;10:e0119294. [PMID: 25807392 PMCID: PMC4373852 DOI: 10.1371/journal.pone.0119294] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/23/2014] [Accepted: 01/29/2015] [Indexed: 11/18/2022]  Open
15
Deciphering deterioration mechanisms of complex diseases based on the construction of dynamic networks and systems analysis. Sci Rep 2015;5:9283. [PMID: 25788156 PMCID: PMC4365388 DOI: 10.1038/srep09283] [Citation(s) in RCA: 43] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2014] [Accepted: 02/20/2015] [Indexed: 12/16/2022]  Open
16
Rabajante JF, Babierra AL. Branching and oscillations in the epigenetic landscape of cell-fate determination. PROGRESS IN BIOPHYSICS AND MOLECULAR BIOLOGY 2015;117:240-249. [DOI: 10.1016/j.pbiomolbio.2015.01.006] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/25/2014] [Revised: 01/05/2015] [Accepted: 01/18/2015] [Indexed: 12/15/2022]
17
Wang Y, Tan J, Sadre-Marandi F, Liu J, Zou X. Mathematical modeling for intracellular transport and binding of HIV-1 Gag proteins. Math Biosci 2015;262:198-205. [PMID: 25640873 DOI: 10.1016/j.mbs.2015.01.008] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2014] [Revised: 01/12/2015] [Accepted: 01/14/2015] [Indexed: 01/18/2023]
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