Three-dimensional fluorescent microscopy via simultaneous illumination and detection at multiple planes

Cancellation of Spectral and Spatial Crosstalk in Spectral Imaging for High-Dynamic-Range Electrophoretic Analysis of STR-PCR Products

In spectral imaging, an optical system generates two mutually dependent kinds of crosstalk on an image sensor: spectral crosstalk (i.e., spectral mixing) between fluorescences of different dyes and spatial crosstalk (i.e., image artifacts) between fluorescences from different emission points in the field of view of the sensor. Therefore, an algorithm to cancel both kinds of crosstalk simultaneously (i.e., simultaneous spectral unmixing and image-artifact reduction) is proposed. The algorithm is based on the assumption that a crosstalk matrix (i.e., point-spread functions, PSFs) consisting of all crosstalk ratios is constant regardless of the causes of both kinds of crosstalk. By applying the algorithm to a nine-wavelength-band measurement of four-capillary electrophoretic separation of STR-PCR (short tandem repeat-polymerase chain reaction) products labeled with six dyes, true peaks of each of the dyes were obtained, while false peaks due to spatial crosstalk were reduced below the lower limit of detection in electropherograms. As a result, effective sensitivity and effective dynamic range were improved by 2 orders of magnitude. Moreover, it became possible to perform robust human identification of on-site-collected trace samples containing template DNA at any concentration in a 3-order concentration range by a single STR-PCR and a single electrophoretic separation.

KHz-rate volumetric voltage imaging of the whole Zebrafish heart

Fast volumetric imaging is essential for understanding the function of excitable tissues such as those found in the brain and heart. Measuring cardiac voltage transients in tissue volumes is challenging, especially at the high spatial and temporal resolutions needed to give insight to cardiac function. We introduce a new imaging modality based on simultaneous illumination of multiple planes in the tissue and parallel detection with multiple cameras, avoiding compromises inherent in any scanning approach. The system enables imaging of voltage transients in situ, allowing us, for the first time to our knowledge, to map voltage activity in the whole heart volume at KHz rates. The high spatiotemporal resolution of our method enabled the observation of novel dynamics of electrical propagation through the zebrafish atrioventricular canal.

Uniform intensity in multifocal microscopy using a spatial light modulator

Multifocal microscopy (MFM) offers high-speed three-dimensional imaging through the simultaneous image capture from multiple focal planes. Conventional MFM systems use a fabricated grating in the emission path for a single emission wavelength band and one set of focal plane separations. While a Spatial Light Modulator (SLM) can add more flexibility as a replacement to the fabricated grating, the relatively small number of pixels in the SLM chip, cross-talk between the pixels, and aberrations in the imaging system can produce non-uniform intensity in the different axially separated image planes. We present an in situ iterative SLM calibration algorithm that overcomes these optical- and hardware-related limitations to deliver near-uniform intensity across all focal planes. Using immobilized gold nanoparticles under darkfield illumination, we demonstrate superior intensity evenness compared to current methods. We also demonstrate applicability across emission wavelengths, axial plane separations, imaging modalities, SLM settings, and different SLM manufacturers. Therefore, our microscope design and algorithms provide an alternative to the use of fabricated gratings in MFM, as they are relatively simple and could find broad applications in the wider research community.

Wavelength-tunable focusing via a Fresnel zone microsphere

In this Letter, a novel, to the best of our knowledge, structural configuration on a transparent microsphere is proposed to engineer the focusing light field. By patterning a hybrid diffractive Fresnel zone plate structure on a partially milled microsphere using a focused ion beam, wavelength-dependent switching between mono-focal and multi-focal functionalities can be achieved. Generation of on-axis tri-foci and mono-focus light fields under high numerical-aperture (${\rm NA}\gt {0.67}$NA>0.67) conditions at two working wavelengths (405 nm and 808 nm) have been demonstrated both numerically and experimentally.

Parallelized volumetric fluorescence microscopy with a reconfigurable coded incoherent light-sheet array

Parallelized fluorescence imaging has been a long-standing pursuit that can address the unmet need for a comprehensive three-dimensional (3D) visualization of dynamical biological processes with minimal photodamage. However, the available approaches are limited to incomplete parallelization in only two dimensions or sparse sampling in three dimensions. We hereby develop a novel fluorescence imaging approach, called coded light-sheet array microscopy (CLAM), which allows complete parallelized 3D imaging without mechanical scanning. Harnessing the concept of an "infinity mirror", CLAM generates a light-sheet array with controllable sheet density and degree of coherence. Thus, CLAM circumvents the common complications of multiple coherent light-sheet generation in terms of dedicated wavefront engineering and mechanical dithering/scanning. Moreover, the encoding of multiplexed optical sections in CLAM allows the synchronous capture of all sectioned images within the imaged volume. We demonstrate the utility of CLAM in different imaging scenarios, including a light-scattering medium, an optically cleared tissue, and microparticles in fluidic flow. CLAM can maximize the signal-to-noise ratio and the spatial duty cycle, and also provides a further reduction in photobleaching compared to the major scanning-based 3D imaging systems. The flexible implementation of CLAM regarding both hardware and software ensures compatibility with any light-sheet imaging modality and could thus be instrumental in a multitude of areas in biological research.

Three-dimensional fluorescence imaging using the transport of intensity equation

We propose a nonscanning three-dimensional (3-D) fluorescence imaging technique using the transport of intensity equation (TIE) and free-space Fresnel propagation. In this imaging technique, a phase distribution corresponding to defocused fluorescence images with a point-light-source-like shape is retrieved by a TIE-based phase retrieval algorithm. From the obtained phase distribution, and its corresponding amplitude distribution, of the defocused fluorescence image, various images at different distances can be reconstructed at the desired plane after Fresnel propagation of the complex wave function. Through the proposed imaging approach, the 3-D fluorescence imaging can be performed in multiple planes. The fluorescence intensity images are captured with the help of an electrically tunable lens; hence, the imaging technique is free from motion artifacts. We present experimental results corresponding to microbeads and a biological sample to demonstrate the proposed 3-D fluorescence imaging technique.

Imaging Subcellular Dynamics with Fast and Light-Efficient Volumetrically Parallelized Microscopy

In fluorescence microscopy, the serial acquisition of 2D images to form a 3D volume limits the maximum imaging speed. This is particularly evident when imaging adherent cells in a light-sheet fluorescence microscopy format, as their elongated morphologies require ~200 image planes per image volume. Here, by illuminating the specimen with three light-sheets, each independently detected, we present a light-efficient, crosstalk free, and volumetrically parallelized 3D microscopy technique that is optimized for high-speed (up to 14 Hz) subcellular (300 nm lateral, 600 nm axial resolution) imaging of adherent cells. We demonstrate 3D imaging of intracellular processes, including cytoskeletal dynamics in single cell migration and collective wound healing for 1500 and 1000 time points, respectively. Further, we capture rapid biological processes, including trafficking of early endosomes with velocities exceeding 10 microns per second and calcium signaling in primary neurons.