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Yamamura H, Hagiwara T, Hayashi Y, Osawa K, Kato H, Katsu T, Masuda K, Sumino A, Yamashita H, Jinno R, Abe M, Miyagawa A. Antibacterial Activity of Membrane-Permeabilizing Bactericidal Cyclodextrin Derivatives. ACS OMEGA 2021; 6:31831-31842. [PMID: 34870006 PMCID: PMC8638021 DOI: 10.1021/acsomega.1c04541] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/20/2021] [Accepted: 10/29/2021] [Indexed: 05/08/2023]
Abstract
Antimicrobial peptides that act by disrupting bacterial membranes are attractive agents for treating drug-resistant bacteria. This study investigates a membrane-disrupting peptide mimic made of a cyclic oligosaccharide cyclodextrin scaffold that can be chemically polyfunctionalized. An antibacterial functional group on the peptide was simplified to an alkylamino group that combines cationic and hydrophobic moieties, the former to interact with the anionic bacterial membrane and the latter with the membrane interior. The cyclodextrins equipped with eight alkylamino groups on the molecules using a poly-click reaction exhibited antibacterial activity against Gram-positive and Gram-negative bacteria, including drug-resistant pathogens such as carbapenem-resistant Enterobacteriaceae. Several lines of evidence showed that these agents disrupt bacterial membranes, leading to rapid bacterial cell death. The resulting membrane perturbation was directly visualized using high-speed atomic force microscopy imaging. In Gram-negative bacteria, the membrane-permeabilizing action of these derivatives allowed the entry of co-treated traditional antibiotics, which were then active against these bacteria.
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Affiliation(s)
- Hatsuo Yamamura
- Graduate
School of Engineering, Nagoya Institute
of Technology, Showa-ku, Nagoya 466-8555, Japan
| | - Tatsuya Hagiwara
- Graduate
School of Engineering, Nagoya Institute
of Technology, Showa-ku, Nagoya 466-8555, Japan
| | - Yuma Hayashi
- Graduate
School of Engineering, Nagoya Institute
of Technology, Showa-ku, Nagoya 466-8555, Japan
| | - Kayo Osawa
- Department
of Medical Technology, Faculty of Health Sciences, Kobe Tokiwa University, Nagata-ku, Kobe 653-0838, Japan
| | - Hisato Kato
- Graduate
School of Clinical Pharmacy, Shujitsu University, Naka-ku, Okayama 703-8516, Japan
| | - Takashi Katsu
- Graduate
School of Clinical Pharmacy, Shujitsu University, Naka-ku, Okayama 703-8516, Japan
| | - Kazufumi Masuda
- Graduate
School of Clinical Pharmacy, Shujitsu University, Naka-ku, Okayama 703-8516, Japan
| | - Ayumi Sumino
- Nano
Life Science Institute (WPI-NanoLSI), Kanazawa
University, Kakumamachi, Kanazawa 920-1192, Japan
- Institute
for Frontier Science Initiative, Kanazawa
University, Kakumamachi, Kanazawa 920-1192, Japan
| | - Hayato Yamashita
- Graduate
School of Engineering Science, Osaka University, Toyonaka, Osaka 560-8531, Japan
| | - Ryo Jinno
- Graduate
School of Engineering Science, Osaka University, Toyonaka, Osaka 560-8531, Japan
| | - Masayuki Abe
- Graduate
School of Engineering Science, Osaka University, Toyonaka, Osaka 560-8531, Japan
| | - Atsushi Miyagawa
- Graduate
School of Engineering, Nagoya Institute
of Technology, Showa-ku, Nagoya 466-8555, Japan
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2
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Zhu J, Hu C, Zeng Z, Deng X, Zeng L, Xie S, Fang Y, Jin Y, Alezra V, Wan Y. Polymyxin B-inspired non-hemolytic tyrocidine A analogues with significantly enhanced activity against gram-negative bacteria: How cationicity impacts cell specificity and antibacterial mechanism. Eur J Med Chem 2021; 221:113488. [PMID: 33991963 DOI: 10.1016/j.ejmech.2021.113488] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2020] [Revised: 03/31/2021] [Accepted: 04/18/2021] [Indexed: 11/25/2022]
Abstract
Naturally occurring cyclic antimicrobial peptides (AMPs) such as tyrocidine A (Tyrc A) and gramicidin S (GS) are appealing targets for the development of novel antibiotics. However, their therapeutic potentials are limited by undesired hemolytic activity and relatively poor activity against Gram-negative bacteria. Inspired by polycationic lipopeptide polymyxin B (PMB), the so called 'last-resort' antibiotic for the treatment of infections caused by multidrug-resistant Gram-negative bacteria, we synthesized and biologically evaluated a series of polycationic analogues derived from Tyrc A. We were able to obtain peptide 8 that possesses 5 positive charges exhibiting potent activities against both Gram-negative and Gram-positive bacteria along with totally diminished hemolytic activity. Intriguingly, antibacterial mechanism studies revealed that, rather than the 'pore forming' model that possessed by Tyrc A, peptide 8 likely diffuses membrane in a 'detergent-like' manner. Furthermore, when treating mice with peritonitis-sepsis, peptide 8 showed excellent antibacterial and anti-inflammatory activities in vivo.
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Affiliation(s)
- Jibao Zhu
- National Pharmaceutical Engineering Center for Solid Preparation in Chinese Herbal Medicine, Jiangxi University of Traditional Chinese Medicine, Nanchang, 330004, PR China
| | - Chengfei Hu
- National Pharmaceutical Engineering Center for Solid Preparation in Chinese Herbal Medicine, Jiangxi University of Traditional Chinese Medicine, Nanchang, 330004, PR China
| | - Zizhen Zeng
- National Pharmaceutical Engineering Center for Solid Preparation in Chinese Herbal Medicine, Jiangxi University of Traditional Chinese Medicine, Nanchang, 330004, PR China
| | - Xiaoyu Deng
- Minist Educ, Key Lab Modern Preparat TCM, Jiangxi University of Traditional Chinese Medicine, Nanchang, 330004, PR China
| | - Lingbing Zeng
- Department of Clinical Laboratory, The First Affiliated Hospital of Nanchang University, 17 Yongwaizheng Street, Donghu, Nanchang, 330006, PR China
| | - Saisai Xie
- National Pharmaceutical Engineering Center for Solid Preparation in Chinese Herbal Medicine, Jiangxi University of Traditional Chinese Medicine, Nanchang, 330004, PR China
| | - Yuanying Fang
- National Pharmaceutical Engineering Center for Solid Preparation in Chinese Herbal Medicine, Jiangxi University of Traditional Chinese Medicine, Nanchang, 330004, PR China
| | - Yi Jin
- National Pharmaceutical Engineering Center for Solid Preparation in Chinese Herbal Medicine, Jiangxi University of Traditional Chinese Medicine, Nanchang, 330004, PR China
| | - Valérie Alezra
- Laboratoire de Méthodologie, Synthèse et Molécules Thérapeutiques (ICMMO), UMR 8182, CNRS, Université Paris-Saclay, Bât 410, Facultédes Sciences D'Orsay, Orsay, 291405, France
| | - Yang Wan
- National Pharmaceutical Engineering Center for Solid Preparation in Chinese Herbal Medicine, Jiangxi University of Traditional Chinese Medicine, Nanchang, 330004, PR China; Laboratoire de Méthodologie, Synthèse et Molécules Thérapeutiques (ICMMO), UMR 8182, CNRS, Université Paris-Saclay, Bât 410, Facultédes Sciences D'Orsay, Orsay, 291405, France; State Key Laboratory for Chemistry and Molecular Engineering of Medicinal Resources, Guangxi Normal University, 15 Yuchai Road, Guilin, 541004, PR China.
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3
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Yamamura H, Isshiki K, Fujita Y, Kato H, Katsu T, Masuda K, Osawa K, Miyagawa A. Gramicidin S-inspired antimicrobial cyclodextrin to disrupt gram-negative and gram-positive bacterial membranes. MEDCHEMCOMM 2019; 10:1432-1437. [PMID: 31803397 PMCID: PMC6836745 DOI: 10.1039/c9md00229d] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/18/2019] [Accepted: 06/12/2019] [Indexed: 11/21/2022]
Abstract
A membrane-active antimicrobial peptide gramicidin S-like amphiphilic structure was prepared from cyclodextrin. The mimic was a cyclic oligomer composed of 6-amino-modified glucose 2,3-di-O-propanoates and it exhibited antimicrobial activity against Gram-positive and Gram-negative bacteria, together with no resistance development and low haemolytic activity against red blood cells.
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Affiliation(s)
- Hatsuo Yamamura
- Materials Science and Engineering , Graduate School of Engineering , Nagoya Institute of Technology , Gokiso-cho, Showa-ku , Nagoya 466-8555 , Japan .
| | - Kana Isshiki
- Materials Science and Engineering , Graduate School of Engineering , Nagoya Institute of Technology , Gokiso-cho, Showa-ku , Nagoya 466-8555 , Japan .
| | - Yusuke Fujita
- Materials Science and Engineering , Graduate School of Engineering , Nagoya Institute of Technology , Gokiso-cho, Showa-ku , Nagoya 466-8555 , Japan .
| | - Hisato Kato
- School of Pharmacy , Shujitsu University , 1-6-1 Nishigawara, Naka-ku, Okayama-shi , Okayama 703-8516 , Japan
| | - Takashi Katsu
- School of Pharmacy , Shujitsu University , 1-6-1 Nishigawara, Naka-ku, Okayama-shi , Okayama 703-8516 , Japan
| | - Kazufumi Masuda
- Graduate School of Clinical Pharmacy , Shujitsu University , 1-6-1 Nishigawara, Naka-ku, Okayama-shi , Okayama 703-8516 , Japan
| | - Kayo Osawa
- Department of Biophysics , Kobe University , Graduate School of Health Sciences , 7-10-2 Tomogaoka, Suma-ku , Kobe 654-0142 , Japan
| | - Atsushi Miyagawa
- Materials Science and Engineering , Graduate School of Engineering , Nagoya Institute of Technology , Gokiso-cho, Showa-ku , Nagoya 466-8555 , Japan .
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4
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Guan Q, Huang S, Jin Y, Campagne R, Alezra V, Wan Y. Recent Advances in the Exploration of Therapeutic Analogues of Gramicidin S, an Old but Still Potent Antimicrobial Peptide. J Med Chem 2019; 62:7603-7617. [DOI: 10.1021/acs.jmedchem.9b00156] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
- Qinkun Guan
- National Pharmaceutical Engineering Center for Solid Preparation in Chinese Herbal Medicine, Jiangxi University of Traditional Chinese Medicine, Nanchang 330006, P. R. China
| | - Shuhui Huang
- National Pharmaceutical Engineering Center for Solid Preparation in Chinese Herbal Medicine, Jiangxi University of Traditional Chinese Medicine, Nanchang 330006, P. R. China
- Jiangxi Maternal and Child Hospital, Nanchang 330006, P. R. China
| | - Yi Jin
- National Pharmaceutical Engineering Center for Solid Preparation in Chinese Herbal Medicine, Jiangxi University of Traditional Chinese Medicine, Nanchang 330006, P. R. China
| | - Rémy Campagne
- Faculté des Sciences d’Orsay, Université Paris-Sud, Laboratoire de Méthodologie, Synthèse
et Molécules Thérapeutiques, ICMMO, UMR 8182, CNRS,
Université Paris-Saclay, Bât 410, 91405 Orsay, France
| | - Valérie Alezra
- Faculté des Sciences d’Orsay, Université Paris-Sud, Laboratoire de Méthodologie, Synthèse
et Molécules Thérapeutiques, ICMMO, UMR 8182, CNRS,
Université Paris-Saclay, Bât 410, 91405 Orsay, France
| | - Yang Wan
- National Pharmaceutical Engineering Center for Solid Preparation in Chinese Herbal Medicine, Jiangxi University of Traditional Chinese Medicine, Nanchang 330006, P. R. China
- Faculté des Sciences d’Orsay, Université Paris-Sud, Laboratoire de Méthodologie, Synthèse
et Molécules Thérapeutiques, ICMMO, UMR 8182, CNRS,
Université Paris-Saclay, Bât 410, 91405 Orsay, France
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5
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Yamamura H, Mabuchi T, Ishida T, Miyagawa A. Syntheses and structure-membrane active antimicrobial activity relationship of alkylamino-modified glucose, maltooligosaccharide, and amylose. Chem Biol Drug Des 2017; 90:1012-1018. [DOI: 10.1111/cbdd.12989] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2016] [Revised: 02/22/2017] [Accepted: 03/20/2017] [Indexed: 11/27/2022]
Affiliation(s)
- Hatsuo Yamamura
- Life and Applied Chemistry; Graduate School of Engineering; Nagoya Institute of Technology; Nagoya Japan
- Materials Science and Engineering; Graduate School of Engineering; Nagoya Institute of Technology; Nagoya Japan
| | - Takahiro Mabuchi
- Materials Science and Engineering; Graduate School of Engineering; Nagoya Institute of Technology; Nagoya Japan
| | - Tomoki Ishida
- Life and Applied Chemistry; Graduate School of Engineering; Nagoya Institute of Technology; Nagoya Japan
| | - Atsushi Miyagawa
- Life and Applied Chemistry; Graduate School of Engineering; Nagoya Institute of Technology; Nagoya Japan
- Materials Science and Engineering; Graduate School of Engineering; Nagoya Institute of Technology; Nagoya Japan
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6
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Yamamura H, Miyagawa A, Sugiyama H, Murata K, Mabuti T, Mitsuhashi R, Hagiwara T, Nonaka M, Tanimoto K, Tomita H. Rule of Hydrophobicity/Hydrophilicity Balance in Membrane-Disrupting Antimicrobial Activity of Polyalkylamino Cyclodextrins Synthesized via Click Chemistry. ChemistrySelect 2016. [DOI: 10.1002/slct.201500017] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Hatsuo Yamamura
- Graduate School of Engineering; Nagoya Institute of Technology, Gokiso-cho, Showa-ku; Nagoya 466-8555 Japan
| | - Atsushi Miyagawa
- Graduate School of Engineering; Nagoya Institute of Technology, Gokiso-cho, Showa-ku; Nagoya 466-8555 Japan
| | - Hiroki Sugiyama
- Graduate School of Engineering; Nagoya Institute of Technology, Gokiso-cho, Showa-ku; Nagoya 466-8555 Japan
| | - Kensuke Murata
- Graduate School of Engineering; Nagoya Institute of Technology, Gokiso-cho, Showa-ku; Nagoya 466-8555 Japan
| | - Takahiro Mabuti
- Graduate School of Engineering; Nagoya Institute of Technology, Gokiso-cho, Showa-ku; Nagoya 466-8555 Japan
| | - Ryogo Mitsuhashi
- Graduate School of Engineering; Nagoya Institute of Technology, Gokiso-cho, Showa-ku; Nagoya 466-8555 Japan
| | - Tatsuya Hagiwara
- Graduate School of Engineering; Nagoya Institute of Technology, Gokiso-cho, Showa-ku; Nagoya 466-8555 Japan
| | - Miho Nonaka
- Graduate School of Engineering; Nagoya Institute of Technology, Gokiso-cho, Showa-ku; Nagoya 466-8555 Japan
| | - Koichi Tanimoto
- Laboratory of Bacterial Drug Resistance; Graduate School of Medicine; Gunma University; 3-39-22 Showa-machi, Maebashi Gunma 371-8511 Japan
| | - Haruyoshi Tomita
- Department of Bacteriology and Laboratory of Bacterial Drug Resistance; Graduate School of Medicine; Gunma University; 3-39-22 Showa-machi, Maebashi Gunma 371-8511 Japan
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7
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Abdelhamid HN, Khan MS, Wu HF. Graphene oxide as a nanocarrier for gramicidin (GOGD) for high antibacterial performance. RSC Adv 2014. [DOI: 10.1039/c4ra07250b] [Citation(s) in RCA: 63] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022] Open
Abstract
As a powerful and novel nanocarrier, graphene oxide (GO) is employed to load a water insoluble antibacterial drug, gramicidin (GD), for effective antibacterial treatments.
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Affiliation(s)
- Hani Nasser Abdelhamid
- Department of Chemistry
- National Sun Yat-Sen University
- Kaohsiung, Taiwan
- Department of Chemistry
- Assuit University
| | - M. Shahnawaz Khan
- Doctoral Degree Program in Marine Biotechnology
- National Sun Yat-Sen University and Academia Sinica
- Kaohsiung, Taiwan
| | - Hui-Fen Wu
- Department of Chemistry
- National Sun Yat-Sen University
- Kaohsiung, Taiwan
- School of Pharmacy
- College of Pharmacy
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8
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Yamamura H, Sugiyama Y, Murata K, Yokoi T, Kurata R, Miyagawa A, Sakamoto K, Komagoe K, Inoue T, Katsu T. Synthesis of antimicrobial cyclodextrins bearing polyarylamino and polyalkylamino groups via click chemistry for bacterial membrane disruption. Chem Commun (Camb) 2014; 50:5444-6. [DOI: 10.1039/c3cc49543d] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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9
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Yamamura H, Suzuki K, Uchibori K, Miyagawa A, Kawai M, Ohmizo C, Katsu T. Mimicking an antimicrobial peptidepolymyxin B by use of cyclodextrin. Chem Commun (Camb) 2012; 48:892-4. [DOI: 10.1039/c1cc16369h] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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10
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An LK, Li RL, Zuo YL, Gu LQ. Solvent-free thermocyclization of the unactivated linear gramicidin S precursor and analogues. Org Lett 2011; 13:34-7. [PMID: 21121629 DOI: 10.1021/ol102800j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
A convenient thermocyclization of the linear gramicidin S precursor and its analogues is demonstrated. With the preorganized β-sheet conformation, the unactivated linear precursors can cyclize into the corresponding head-to-tail cyclic products in high yield after being heated under solvent-free conditions.
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Affiliation(s)
- Lin-Kun An
- School of Pharmaceutical Sciences, Sun Yat-sen University, Guangzhou 510006, China.
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11
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Yamada K, Kodaira M, Shinoda SS, Komagoe K, Oku H, Katakai R, Katsu T, Matsuo I. Structure–activity relationships of gramicidin S analogs containing (β-3-pyridyl)-α,β-dehydroalanine residues on membrane permeability. MEDCHEMCOMM 2011. [DOI: 10.1039/c1md00081k] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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12
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Kawai M, Yamamura H, Tanaka R, Umemoto H, Ohmizo C, Higuchi S, Katsu T. Proline residue-modified polycationic analogs of gramicidin S with high antibacterial activity against both Gram-positive and Gram-negative bacteria and low hemolytic activity*. ACTA ACUST UNITED AC 2008; 65:98-104. [PMID: 15686540 DOI: 10.1111/j.1399-3011.2004.00204.x] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
Abstract
Novel polycationic analogs of the cyclic decapeptide antibiotic, gramicidin S, possessing NH(2), D/L-Phe-NH or L-Lys-NH groups at the 4alpha- or 4beta-positions of the L-Pro residues, were synthesized. While L-Pro(4alpha/beta-NH(2))-containing analogs exhibited much weaker antibacterial activity, the D/L-Phe and L-Lys-substituted analogs exhibited higher antibacterial activity against Gram-negative bacteria than the parent gramicidin S. All of these additional amino group-containing analogs showed substantially reduced toxicity against human blood cells.
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Affiliation(s)
- M Kawai
- Graduate School of Engineering, Nagoya Institute of Technology, Nagoya 466-8555, Japan.
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Zhang A, Schlüter A. Multigram Solution-Phase Synthesis of Three Diastereomeric Tripeptidic Second-Generation Dendrons Based on (2S,4S)-, (2S,4R)-, and (2R,4S)-4-Aminoprolines. Chem Asian J 2007; 2:1540-8. [DOI: 10.1002/asia.200700207] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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14
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Ohmizo C, Yata M, Katsu T. Bacterial cytoplasmic membrane permeability assay using ion-selective electrodes. J Microbiol Methods 2004; 59:173-9. [PMID: 15369853 DOI: 10.1016/j.mimet.2004.06.008] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2004] [Revised: 06/21/2004] [Accepted: 06/23/2004] [Indexed: 10/26/2022]
Abstract
We used K(+) and tetraphenylphosphonium (TPP(+)) electrodes simultaneously to evaluate the ability of antimicrobial peptides to form channels (or more generally to increase permeability) and to abolish membrane potential in bacterial cytoplasmic membranes in situ. Such evaluations are usually made independently by colorimetric monitoring of the hydrolysis of a chromogenic substrate by a cytoplasmic enzyme or by fluorimetric determination of membrane depolarization using a membrane potential-sensitive dye. In the present study, the K(+) electrode was used to evaluate channel-forming ability by monitoring the efflux of K(+) originally present in the cytoplasm of bacteria, while the TPP(+) electrode was used to examine membrane depolarization causing the efflux of TPP(+) accumulated in the cytoplasm of bacteria dependent on membrane potential. Thus, the combination of these two electrodes enabled us to clarify how the peptide-induced formation of ion channels is involved in disrupting the energy-generating system in situ.
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Affiliation(s)
- Chie Ohmizo
- Faculty of Pharmaceutical Sciences, Okayama University, Tsushima, Okayama 700-8530, Japan
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