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Rathbone HW, Davis JA, Michie KA, Goodchild SC, Robertson NO, Curmi PMG. Coherent phenomena in photosynthetic light harvesting: part two-observations in biological systems. Biophys Rev 2018; 10:1443-1463. [PMID: 30242555 PMCID: PMC6233342 DOI: 10.1007/s12551-018-0456-x] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2018] [Accepted: 09/06/2018] [Indexed: 10/28/2022] Open
Abstract
Considerable debate surrounds the question of whether or not quantum mechanics plays a significant, non-trivial role in photosynthetic light harvesting. Many have proposed that quantum superpositions and/or quantum transport phenomena may be responsible for the efficiency and robustness of energy transport present in biological systems. The critical experimental observations comprise the observation of coherent oscillations or "quantum beats" via femtosecond laser spectroscopy, which have been observed in many different light harvesting systems. Part Two of this review aims to provide an overview of experimental observations of energy transfer in the most studied light harvesting systems. Length scales, derived from crystallographic studies, are combined with energy and time scales of the beats observed via spectroscopy. A consensus is emerging that most long-lived (hundreds of femtoseconds) coherent phenomena are of vibrational or vibronic origin, where the latter may result in coherent excitation transport within a protein complex. In contrast, energy transport between proteins is likely to be incoherent in nature. The question of whether evolution has selected for these non-trivial quantum phenomena may be an unanswerable question, as dense packings of chromophores will lead to strong coupling and hence non-trivial quantum phenomena. As such, one cannot discern whether evolution has optimised light harvesting systems for high chromophore density or for the ensuing quantum effects as these are inextricably linked and cannot be switched off.
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Affiliation(s)
- Harry W Rathbone
- School of Physics, The University of New South Wales, Sydney, New South Wales, 2052, Australia
| | - Jeffery A Davis
- Centre for Quantum and Optical Science, Faculty of Science, Engineering and Technology, Swinburne University of Technology, Hawthorn, Victoria, 3122, Australia
| | - Katharine A Michie
- School of Physics, The University of New South Wales, Sydney, New South Wales, 2052, Australia
| | - Sophia C Goodchild
- Department of Chemistry and Biomolecular Sciences, Macquarie University, Sydney, New South Wales, Australia
| | - Neil O Robertson
- School of Physics, The University of New South Wales, Sydney, New South Wales, 2052, Australia
| | - Paul M G Curmi
- School of Physics, The University of New South Wales, Sydney, New South Wales, 2052, Australia.
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Molotokaite E, Remelli W, Casazza AP, Zucchelli G, Polli D, Cerullo G, Santabarbara S. Trapping Dynamics in Photosystem I-Light Harvesting Complex I of Higher Plants Is Governed by the Competition Between Excited State Diffusion from Low Energy States and Photochemical Charge Separation. J Phys Chem B 2017; 121:9816-9830. [DOI: 10.1021/acs.jpcb.7b07064] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Egle Molotokaite
- Centro
Studi sulla Biologia Cellulare e Molecolare delle Piante, CNR, Via Celoria 26, 20133 Milan, Italy
| | - William Remelli
- Centro
Studi sulla Biologia Cellulare e Molecolare delle Piante, CNR, Via Celoria 26, 20133 Milan, Italy
| | - Anna Paola Casazza
- Istituto
di Biologia e Biotecnologia Agraria, Consiglio Nazionale delle Ricerche, Via Bassini 15a, 20133 Milano, Italy
| | - Giuseppe Zucchelli
- Centro
Studi sulla Biologia Cellulare e Molecolare delle Piante, CNR, Via Celoria 26, 20133 Milan, Italy
| | - Dario Polli
- Istituto di Fotonica e Nanotecnologie del CNR, Dipartimento di Fisica, Politecnico di Milano, P.zza Leonardo
da Vinci 32, 20133 Milano, Italy
- Center
for Nano Science and Technology at Polimi, Istituto Italiano di Tecnologia, Via Giovanni Pascoli, 70/3, 20133 Milano, Italy
| | - Giulio Cerullo
- Istituto di Fotonica e Nanotecnologie del CNR, Dipartimento di Fisica, Politecnico di Milano, P.zza Leonardo
da Vinci 32, 20133 Milano, Italy
| | - Stefano Santabarbara
- Centro
Studi sulla Biologia Cellulare e Molecolare delle Piante, CNR, Via Celoria 26, 20133 Milan, Italy
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Milanovsky GE, Ptushenko VV, Cherepanov DA, Semenov AY. Mechanism of primary and secondary ion-radical pair formation in photosystem I complexes. BIOCHEMISTRY (MOSCOW) 2014; 79:221-6. [PMID: 24821448 DOI: 10.1134/s0006297914030079] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
The mechanisms of the ultrafast charge separation in reaction centers of photosystem I (PS I) complexes are discussed. A kinetic model of the primary reactions in PS I complexes is presented. The model takes into account previously calculated values of redox potentials of cofactors, reorganization energies of the primary P700(+)A0(-) and secondary P700(+)A1(-) ion-radical pairs formation, and the possibility of electron transfer via both symmetric branches A and B of redox-cofactors. The model assumes that the primary electron acceptor A0 in PS I is represented by a dimer of chlorophyll molecules Chl2A/Chl3A and Chl2B/Chl3B in branches A and B of the cofactors. The characteristic times of formation of P700(+)A0(-) and P700(+)A1(-) calculated on the basis of the model are close to the experimental values obtained by pump-probe femtosecond absorption spectroscopy. It is demonstrated that a small difference in the values of redox potentials between the primary electron acceptors A0A and A0B in branches A and B leads to asymmetry of the electron transfer in a ratio of 70 : 30 in favor of branch A. The secondary charge separation is thermodynamically irreversible in the submicrosecond range and is accompanied by additional increase in asymmetry between the branches of cofactors of PS I.
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Affiliation(s)
- G E Milanovsky
- Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Moscow, 119992, Russia.
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Milanovsky GE, Ptushenko VV, Golbeck JH, Semenov AY, Cherepanov DA. Molecular dynamics study of the primary charge separation reactions in Photosystem I: effect of the replacement of the axial ligands to the electron acceptor A₀. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 2014; 1837:1472-83. [PMID: 24637178 DOI: 10.1016/j.bbabio.2014.03.001] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/30/2013] [Revised: 03/03/2014] [Accepted: 03/05/2014] [Indexed: 10/25/2022]
Abstract
Molecular dynamics (MD) calculations, a semi-continuum (SC) approach, and quantum chemistry (QC) calculations were employed together to investigate the molecular mechanics of ultrafast charge separation reactions in Photosystem I (PS I) of Thermosynechococcus elongatus. A molecular model of PS I was developed with the aim to relate the atomic structure with electron transfer events in the two branches of cofactors. A structural flexibility map of PS I was constructed based on MD simulations, which demonstrated its rigid hydrophobic core and more flexible peripheral regions. The MD model permitted the study of atomic movements (dielectric polarization) in response to primary and secondary charge separations, while QC calculations were used to estimate the direct chemical effect of the A(0A)/A(0B) ligands (Met or Asn in the 688/668 position) on the redox potential of chlorophylls A(0A)/A(0B) and phylloquinones A(1A)/A(1B). A combination of MD and SC approaches was used to estimate reorganization energies λ of the primary (λ₁) and secondary (λ₂ ) charge separation reactions, which were found to be independent of the active branch of electron transfer; in PS I from the wild type, λ₁ was estimated to be 390 ± 20mV, while λ₂ was estimated to be higher at 445 ± 15mV. MD and QC approaches were used to describe the effect of substituting Met688(PsaA)/Met668(PsaB) by Asn688(PsaA)/Asn668(PsaB) on the energetics of electron transfer. Unlike Met, which has limited degrees of freedom in the site, Asn was found to switch between two relatively stable conformations depending on cofactor charge. The introduction of Asn and its conformation flexibility significantly affected the reorganization energy of charge separation and the redox potentials of chlorophylls A(0A)/A(0B) and phylloquinones A(1A)/A(1B), which may explain the experimentally observed slowdown of secondary electron transfer in the M688N(PsaA) variant. This article is part of a special issue entitled: photosynthesis research for sustainability: keys to produce clean energy.
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Affiliation(s)
- Georgy E Milanovsky
- A.N. Belozersky Institute of Physical-Chemical Biology, Moscow State University, Moscow, Russia; Faculty of Bioengineering and Bioinformatics, Moscow State University, Moscow, Russia
| | - Vasily V Ptushenko
- A.N. Belozersky Institute of Physical-Chemical Biology, Moscow State University, Moscow, Russia
| | - John H Golbeck
- Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, PA, USA; Department of Chemistry, The Pennsylvania State University, University Park, PA, USA
| | - Alexey Yu Semenov
- A.N. Belozersky Institute of Physical-Chemical Biology, Moscow State University, Moscow, Russia.
| | - Dmitry A Cherepanov
- A.N. Frumkin Institute of Physical Chemistry and Electrochemistry, Russian Academy of Sciences, Moscow, Russia.
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Sarkisov OM. New directions of femtochemistry and femtobiology. RUSSIAN JOURNAL OF PHYSICAL CHEMISTRY B 2012. [DOI: 10.1134/s1990793112080088] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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Paschenko VZ, Gorokhov VV, Korvatovskiy BN, Bocharov EA, Knox PP, Sarkisov OM, Theiss C, Eichler HJ, Renger G, Rubin AB. The rate of Q(x)→Q(y) relaxation in bacteriochlorophylls of reaction centers from Rhodobacter sphaeroides determined by kinetics of the ultrafast carotenoid bandshift. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 2012; 1817:1399-406. [PMID: 22366029 DOI: 10.1016/j.bbabio.2012.02.006] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/18/2011] [Revised: 01/23/2012] [Accepted: 02/07/2012] [Indexed: 10/14/2022]
Abstract
Transient absorption changes induced by excitation of isolated reaction centers (RCs) from Rhodobacter sphaeroides with 600nm laser pulses of 20fs (full width at half maximum) were monitored in the wavelength region of 420-560nm. The spectral features of the spectrum obtained are characteristic for an electrochromic band shift of the single carotenoid (Car) molecule spheroidene, which is an integral constituent of these RCs. This effect is assigned to an electrochromic bandshift of Car due to the local electric field of the dipole moment formed by electronic excitation of bacteriochlorophyll (BChl) molecule(s) in the neighborhood of Car. Based on the known distances between the pigments, the monomeric BChl (B(B)) in the inactive B-branch is inferred to dominate this effect. The excitation of B(B) at 600nm leads to a transition into the S(2) state (Q(x) band), which is followed by rapid internal conversion to the S(1) state (Q(y) band), thus leading to a change of strength and orientation of the dipole moment, i.e., of the electric field acting on the Car molecule. Therefore, the time course of the electrochromic bandshift reflects the rate of the internal conversion from S(2) to S(1) of B(B). The evaluation of the kinetics leads to a value of 30fs for this relaxation process. This article is part of a Special Issue entitled: Photosynthesis Research for Sustainability: from Natural to Artificial.
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Affiliation(s)
- Vladimir Z Paschenko
- Department of Biophysics, Biology Faculty of the M.V. Lomonosov Moscow State University, Moscow, Russia.
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