Phytobial remediation advances and application of omics and artificial intelligence: a review

Industrialization and urbanization increased the use of chemicals in agriculture, vehicular emissions, etc., and spoiled all environmental sectors. It causes various problems among living beings at multiple levels and concentrations. Phytoremediation and microbial association are emerging as a potential method for removing heavy metals and other contaminants from soil. The treatment uses plant physiology and metabolism to remove or clean up various soil contaminants efficiently. In recent years, omics and artificial intelligence have been seen as powerful techniques for phytobial remediation. Recently, AI and modeling are used to analyze large data generated by omics technologies. Machine learning algorithms can be used to develop predictive models that can help guide the selection of the most appropriate plant and plant growth-promoting rhizobacteria combination that is most effective at remediation. In this review, emphasis is given to the phytoremediation techniques being explored worldwide in soil contamination.

Eisenia fetida impact on cadmium availability and distribution in specific components of the earthworm drilosphere

Although the potential of vermiremediation for restoring metal-contaminated soils is promising, the effects of earthworms on the availability of soil metals are still debatable. Most previous studies considered the soil as a "whole black box." Mobilization or immobilization of metals are affected by earthworm activities within drilosphere hotspots under different soil conditions, which has not been specifically studied. Therefore, an improved 2D terrarium was designed to study the impact of earthworm activities on cadmium (Cd) fate in the drilosphere hotspots (burrow wall soils, burrow casts, and surface casts) of different artificially spiked Cd treatments (CK: 0 mg kg-1; LM: 1 mg kg-1; and HM: 5 mg kg-1) with different organic amendments (2% and 10%). The results revealed that Cd increased earthworm activities with the highest cast production in HM and the highest burrow length in LM. Earthworms exhibited a stronger tendency to reduce total Cd concentration by 4.48-13.58% in casts of LM soils, while 3.37-5.22% in burrow walls under HM treatments. Overall, earthworms could increase the availability of Cd in casts under all conditions (55.46-121.01%). The organic amendments decreased the total Cd concentration and increased the availability of Cd in the disturbed soil. A higher amount of organic amendment significantly decreased total Cd concentration of the drilosphere by 1.16-5.83% in LM and HM treatments, while increasing DTPA-Cd concentrations in all components by 23.13-55.20 %, 14.63-35.11%, and 3.30-11.41% in CK, LM, and HM treatments, respectively, except for earthworm non-disturbed soil and no-earthworm soil in HM treatments. Redundancy analysis (RDA) revealed that the moisture, pH, and total carbon contents in soil are the main factors affecting Cd bioavailability. In this study, we decoded the "black box" of soil by making it relatively simple to better understand the effects and mechanisms of earthworm activities on soil metal availability and consequently provided comprehensive insights for using earthworms in soil vermiremediation.

Landfarming as a sustainable management strategy for fresh and phytoremediated sediment

The aim of this study was to evaluate the effectiveness of a landfarming process (LP) in recovering sediments at different biodegradation phases: phytoremediated dredged sediments (PDS) and fresh dredged sediments (FDS). The PDS landfarming was applied to (1) reduce residual contamination and (2) improve the biological activities in order to obtain a decontaminated matrix rich in organic matter and enzymatic activity to be reused as agronomic substrate. In 3 months of LP, a microbial activity stimulation (from 7 to 48%) and a decrease in organic contamination (about 15%) were recorded. In addition, no phytotoxicity and the content in total organic carbon and nitrogen make the sediments suitable to be reused in agriculture. The FDS landfarming was carried out to (1) reduce water content, (2) transform the organic matter into a more stable form, and (3) decrease organic contaminant level. Five months of LP led to a considerable reduction in water content (40%) and to the activation of microbial biomass metabolism (from 4 to 50 times higher), which achieved proper mineralization of organic matter and contaminants (polycyclic aromatic hydrocarbons near to zero and a total petroleum hydrocarbon reduction of about 60%). The LP also enhanced the stoichiometric ratios of nutrients and enzymes. In conclusion, the LP was a promising and economical methodology to improve the physical, chemical, and biological properties of polluted sediments at different biodegradation phases, creating a substrate ready for several environmental applications. Notably, the PDS resulted appropriate for agricultural use and FDS for civil applications.

Monitoring of a long term phytoremediation process of a soil contaminated by heavy metals and hydrocarbons in Tuscany

The purpose of this study was to monitor and model indicators of soil contamination, organic matter evolution and biochemical processes involved in a long-term phytoremediation process. Populus nigra L., Paulownia tomentosa Steud., Cytisus scoparius L. and natural vegetation were used in differently contaminated areas (high, medium and low levels of contamination). Parameters indicating contamination (total petroleum hydrocarbons (TPH) and heavy metals) and agronomic (C, N and P) and functional (enzyme activities) soil recovery were monitored for 3.5 years. Three subareas with different levels of contamination (high, medium and low) were identified according to the Nemerow Index. A considerable decrease in TPH (52% on average) over time in the whole site was measured, while the metal reduction was only of about 22% at surface level. A stimulation in metabolic soil processes and improvement in the chemical quality of the soil was also observed throughout the experimental site. Statistical analysis modelling showed that the contaminant content decreased following a one-phase decay model, while the dramatic increase in enzyme activities could be represented by an exponential growth equation. On the basis of our data, it is possible to conclude that the initial contamination level affected neither the decontamination process nor the improvement in soil quality, which occurred similarly in the three different contaminated areas.

The phytoremediation of an organic and inorganic polluted soil: A real scale experience

A phytoremediation process with horse manure, plants (Populus alba, Cytisus scoparius, Paulownia tomentosa) and naturally growing vegetation was carried out at a real-scale in order to phytoremediate and functionally recover a soil contaminated by metals (Zn, Pb, Cd, Ni, Cu, Cr), hydrocarbons (TPH) and polychlorobiphenyls (PCB). All the plants were effective in two years in the reclamation of the polluted soil, showing an average reduction of about 35%, 40%, and 70% in metals, TPH and PCB content, respectively. As regards the plants, the poplar contributed the most to organic removal. In fact, its ability to take up and detoxify organic pollutants is well known. Paulownia tomentosa, instead, showed high metal removal. The Cytisus scoparius was the least effective plant in soil decontamination. The recovery of soil functionality was followed by enzyme activities, expressing the biochemical processes underway, and nutrient content useful for plant growth and development. Throughout the area, an enhancement of metabolic processes and soil chemical quality was observed. All the enzymatic activities showed a general increase over time (until 3-4 fold than the initial value for urease and β-glucosidase). Moreover, Cytisus scoparius, even though it showed a lower decontamination capability, was the most effective in soil metabolic stimulation.

Quality of trace element contaminated soils amended with compost under fast growing tree Paulownia fortunei plantation

The use of fast growing trees could be an alternative in trace element contaminated soils to stabilize these elements and improve soil quality. In this study we investigate the effect of Paulownia fortunei growth on trace element contaminated soils amended with two organic composts under semi-field conditions for a period of 18 months. The experiment was carried out in containers filled with tree different soils, two contaminated soils (neutral AZ and acid V) and a non contaminated soil, NC. Three treatments per soil were established: two organic amendments (alperujo compost, AC, and biosolid compost, BC) and a control without amendment addition. We study parameters related with fertility and contamination in soils and plants. Paulownia growth and amendments increased pH in acid soils whereas no effect of these factors was observed in neutral soils. The plant and the amendments also increased organic matter and consequently, soil fertility. Positive results were also found in soils that were only affected by plant growth (without amendment). A general improvement of "soil biochemical quality" was detected over time and treatments, confirming the positive effect of amendments plus paulownia. Even in contaminated soils, except for Cu and Zn, trace element concentrations in leaves were in the normal range for plants. Results of this mid-term study showed that Paulownia fortunei is a promising species for phytoremediation of trace element polluted soils.

Bioresources for control of environmental pollution

Environmental pollution is one of the biggest threats to human beings. For practical reasons it is not possible to stop most of the activities responsible for environmental pollution; rather we need to eliminate the pollutants. In addition to other existing means, biological processes can be utilized to get rid of toxic pollutants. Degradation, removal, or deactivation of pollutants by biological means is known as bioremediation. Nature itself has several weapons to deal with natural wastage and some of them are equally active for eliminating nonnatural pollutants. Several plants, microorganisms, and some lower eukaryotes utilize environmental pollutants as nutrients and some of them are very efficient for decontaminating specific types of pollutants. If exploited properly, these natural resources have enough potential to deal with most elements of environmental pollution. In addition, several artificial microbial consortia and genetically modified organisms with high bioremediation potential were developed by application of advanced scientific tools. On the other hand, natural equilibria of ecosystems are being affected by human intervention. Rapid population growth, urbanization, and industrialization are destroying ecological balances and the natural remediation ability of the Earth is being compromised. Several potential bioremediation tools are also being destroyed by biodiversity destruction of unexplored ecosystems. Pollution management by bioremediation is highly dependent on abundance, exploration, and exploitation of bioresources, and biodiversity is the key to success. Better pollution management needs the combined actions of biodiversity conservation, systematic exploration of natural resources, and their exploitation with sophisticated modern technologies.

Biocomplementation of SVE to achieve clean-up goals in soils contaminated with toluene and xylene

Soil vapor extraction (SVE) and bioremediation (BR) are two of the most common soil remediation technologies. Their application is widespread; however, both present limitations, namely related to the efficiencies of SVE on organic soils and to the remediation times of some BR processes. This work aimed to study the combination of these two technologies in order to verify the achievement of the legal clean-up goals in soil remediation projects involving seven different simulated soils separately contaminated with toluene and xylene. The remediations consisted of the application of SVE followed by biostimulation. The results show that the combination of these two technologies is effective and manages to achieve the clean-up goals imposed by the Spanish Legislation. Under the experimental conditions used in this work, SVE is sufficient for the remediation of soils, contaminated separately with toluene and xylene, with organic matter contents (OMC) below 4 %. In soils with higher OMC, the use of BR, as a complementary technology, and when the concentration of contaminant in the gas phase of the soil reaches values near 1 mg/L, allows the achievement of the clean-up goals. The OMC was a key parameter because it hindered SVE due to adsorption phenomena but enhanced the BR process because it acted as a microorganism and nutrient source.