1
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Sun K, Ishikawa A, Itaya R, Toichi Y, Yamakado T, Osuka A, Tanaka T, Sakamoto K, Kawai S. On-Surface Synthesis of Polyene-Linked Porphyrin Cooligomer. ACS NANO 2024; 18:13551-13559. [PMID: 38757371 DOI: 10.1021/acsnano.3c12849] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/18/2024]
Abstract
π-Conjugated molecules are viewed as fundamental components in forthcoming molecular nanoelectronics in which semiconducting functional units are linked to each other via metallic molecular wires. However, it is still challenging to construct such block cooligomers on the surface. Here, we present a synthesis of [18]-polyene-linked Zn-porphyrin cooligomers via a two-step reaction of the alkyl groups on Cu(111) and Cu(110). Nonyl groups (-C9H19) substituted at the 5,15-meso positions of Zn-porphyrin were first transformed to alkenyl groups (-C9H10) by dehydrogenation. Subsequently, homocoupling of the terminal -CH2 groups resulted in the formation of extended [18]-polyene-linked porphyrin cooligomers. The structures of the products at each reaction step were investigated by bond-resolved scanning tunneling microscopy at low temperatures. A combination of angle-resolved photoemission spectroscopy and density functional theory calculations revealed the metallic property of the all trans [18]-polyene linker on Cu(110). This finding may provide an approach to fabricate complex nanocarbon structures on the surface.
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Affiliation(s)
- Kewei Sun
- International Center for Young Scientists, National Institute for Materials Science, 1-2-1 Sengen, Tsukuba, Ibaraki 305-0047, Japan
- Center for Basic Research on Materials, National Institute for Materials Science, 1-2-1 Sengen, Tsukuba, Ibaraki 305-0047, Japan
| | - Atsushi Ishikawa
- Department of Transdisciplinary Science and Engineering, School of Environment and Society, Tokyo Institute of Technology, 2-12-1 Ookayama, Meguro-ku, Tokyo 152-8552, Japan
| | - Ryota Itaya
- Department of Applied Physics, Osaka University, Osaka 565-0871, Japan
| | - Yuichiro Toichi
- Department of Applied Physics, Osaka University, Osaka 565-0871, Japan
| | - Takuya Yamakado
- Graduate School of Science, Kyoto University, Kitashirakawa Oiwake-cho, Sakyo-ku, Kyoto 606-8502, Japan
| | - Atsuhiro Osuka
- Graduate School of Science, Kyoto University, Kitashirakawa Oiwake-cho, Sakyo-ku, Kyoto 606-8502, Japan
| | - Takayuki Tanaka
- Graduate School of Science, Kyoto University, Kitashirakawa Oiwake-cho, Sakyo-ku, Kyoto 606-8502, Japan
| | - Kazuyuki Sakamoto
- Department of Applied Physics, Osaka University, Osaka 565-0871, Japan
- Spintronics Research Network Division, Institute for Open and Transdisciplinary Research Initiatives, Osaka University, Osaka 565-0871, Japan
| | - Shigeki Kawai
- Center for Basic Research on Materials, National Institute for Materials Science, 1-2-1 Sengen, Tsukuba, Ibaraki 305-0047, Japan
- Graduate School of Pure and Applied Sciences, University of Tsukuba, Tsukuba 305-8571, Japan
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2
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Cao N, Björk J, Corral-Rascon E, Chen Z, Ruben M, Senge MO, Barth JV, Riss A. The role of aromaticity in the cyclization and polymerization of alkyne-substituted porphyrins on Au(111). Nat Chem 2023; 15:1765-1772. [PMID: 37723257 DOI: 10.1038/s41557-023-01327-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2022] [Accepted: 08/17/2023] [Indexed: 09/20/2023]
Abstract
Aromaticity is an established and widely used concept for the prediction of the reactivity of organic molecules. However, its role remains largely unexplored in on-surface chemistry, where the interaction with the substrate can alter the electronic and geometric structure of the adsorbates. Here we investigate how aromaticity affects the reactivity of alkyne-substituted porphyrin molecules in cyclization and coupling reactions on a Au(111) surface. We examine and quantify the regioselectivity in the reactions by scanning tunnelling microscopy and bond-resolved atomic force microscopy at the single-molecule level. Our experiments show a substantially lower reactivity of carbon atoms that are stabilized by the aromatic diaza[18]annulene pathway of free-base porphyrins. The results are corroborated by density functional theory calculations, which show a direct correlation between aromaticity and thermodynamic stability of the reaction products. These insights are helpful to understand, and in turn design, reactions with aromatic species in on-surface chemistry and heterogeneous catalysis.
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Affiliation(s)
- Nan Cao
- Physics Department E20, Technical University of Munich, Garching, Germany
| | - Jonas Björk
- Department of Physics, Chemistry and Biology, IFM, Linköping University, Linköping, Sweden
| | | | - Zhi Chen
- Institute of Nanotechnology, Karlsruhe Institute of Technology, Eggenstein-Leopoldshafen, Germany
- College of Chemistry and Environmental Engineering, Shenzhen University, Shenzhen, PR China
| | - Mario Ruben
- Institute of Nanotechnology, Karlsruhe Institute of Technology, Eggenstein-Leopoldshafen, Germany
- Centre Européen de Science Quantique, Institut de Science et d'Ingénierie Supramoléculaires (UMR 7006), CNRS-Université de Strasbourg, Strasbourg, France
- Institute of Quantum Materials and Technologies, Karlsruhe Institute of Technology, Eggenstein-Leopoldshafen, Germany
| | - Mathias O Senge
- Institute for Advanced Study (TUM-IAS), Focus Group-Molecular and Interfacial Engineering of Organic Nanosystems, Technical University of Munich, Garching, Germany
| | - Johannes V Barth
- Physics Department E20, Technical University of Munich, Garching, Germany.
| | - Alexander Riss
- Physics Department E20, Technical University of Munich, Garching, Germany.
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3
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Baranowski D, Cojocariu I, Sala A, Africh C, Comelli G, Schio L, Tormen M, Floreano L, Feyer V, Schneider CM. Conservation of Nickel Ion Single-Active Site Character in a Bottom-Up Constructed π-Conjugated Molecular Network. Angew Chem Int Ed Engl 2022; 61:e202210326. [PMID: 36070193 PMCID: PMC9827996 DOI: 10.1002/anie.202210326] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2022] [Indexed: 01/12/2023]
Abstract
On-surface chemistry holds the potential for ultimate miniaturization of functional devices. Porphyrins are promising building-blocks in exploring advanced nanoarchitecture concepts. More stable molecular materials of practical interest with improved charge transfer properties can be achieved by covalently interconnecting molecular units. On-surface synthesis allows to construct extended covalent nanostructures at interfaces not conventionally available. Here, we address the synthesis and properties of covalent molecular network composed of interconnected constituents derived from halogenated nickel tetraphenylporphyrin on Au(111). We report that the π-extended two-dimensional material exhibits dispersive electronic features. Concomitantly, the functional Ni cores retain the same single-active site character of their single-molecule counterparts. This opens new pathways when exploiting the high robustness of transition metal cores provided by bottom-up constructed covalent nanomeshes.
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Affiliation(s)
- Daniel Baranowski
- Peter Grünberg Institute (PGI-6)Jülich Research Center52428JülichGermany
| | - Iulia Cojocariu
- Peter Grünberg Institute (PGI-6)Jülich Research Center52428JülichGermany
| | | | | | - Giovanni Comelli
- TASC LaboratoryCNR-IOM34149TriesteItaly,Department of PhysicsUniversity of Trieste34127TriesteItaly
| | | | | | | | - Vitaliy Feyer
- Peter Grünberg Institute (PGI-6)Jülich Research Center52428JülichGermany,Faculty of Physics and Center for Nanointegration Duisburg-Essen (CENIDE)University of Duisburg-Essen47048DuisburgGermany
| | - Claus M. Schneider
- Peter Grünberg Institute (PGI-6)Jülich Research Center52428JülichGermany,Faculty of Physics and Center for Nanointegration Duisburg-Essen (CENIDE)University of Duisburg-Essen47048DuisburgGermany,Department of Physics and AstronomyUC DavisDavisCA 95616USA
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4
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Baranowski D, Cojocariu I, Sala A, Africh C, Comelli G, Schio L, Tormen M, Floreano L, Feyer V, Schneider CM. Conservation of Nickel Ion Single‐Active Site Character in a Bottom‐Up Constructed π‐Conjugated Molecular Network. Angew Chem Int Ed Engl 2022. [DOI: 10.1002/ange.202210326] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Daniel Baranowski
- Forschungszentrum Jülich GmbH: Forschungszentrum Julich GmbH PGI-6 GERMANY
| | - Iulia Cojocariu
- Forschungszentrum Jülich GmbH: Forschungszentrum Julich GmbH PGI-6 GERMANY
| | | | | | - Giovanni Comelli
- University of Trieste: Universita degli Studi di Trieste Physics ITALY
| | | | | | | | - Vitaliy Feyer
- Forschungszentrum Julich GmbH Leo brand strasse GERMANY
| | - Claus M. Schneider
- Forschungszentrum Jülich: Forschungszentrum Julich GmbH PGI-6 Leo-Brandt-Straße 52425 Jülich GERMANY
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5
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Biswas K, Urbani M, Sánchez-Grande A, Soler-Polo D, Lauwaet K, Matěj A, Mutombo P, Veis L, Brabec J, Pernal K, Gallego JM, Miranda R, Écija D, Jelínek P, Torres T, Urgel JI. Interplay between π-Conjugation and Exchange Magnetism in One-Dimensional Porphyrinoid Polymers. J Am Chem Soc 2022; 144:12725-12731. [PMID: 35817408 PMCID: PMC9305978 DOI: 10.1021/jacs.2c02700] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
The synthesis of novel polymeric materials with porphyrinoid compounds as key components of the repeating units attracts widespread interest from several scientific fields in view of their extraordinary variety of functional properties with potential applications in a wide range of highly significant technologies. The vast majority of such polymers present a closed-shell ground state, and, only recently, as the result of improved synthetic strategies, the engineering of open-shell porphyrinoid polymers with spin delocalization along the conjugation length has been achieved. Here, we present a combined strategy toward the fabrication of one-dimensional porphyrinoid-based polymers homocoupled via surface-catalyzed [3 + 3] cycloaromatization of isopropyl substituents on Au(111). Scanning tunneling microscopy and noncontact atomic force microscopy describe the thermal-activated intra- and intermolecular oxidative ring closure reactions as well as the controlled tip-induced hydrogen dissociation from the porphyrinoid units. In addition, scanning tunneling spectroscopy measurements, complemented by computational investigations, reveal the open-shell character, that is, the antiferromagnetic singlet ground state (S = 0) of the formed polymers, characterized by singlet-triplet inelastic excitations observed between spins of adjacent porphyrinoid units. Our approach sheds light on the crucial relevance of the π-conjugation in the correlations between spins, while expanding the on-surface synthesis toolbox and opening avenues toward the synthesis of innovative functional nanomaterials with prospects in carbon-based spintronics.
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Affiliation(s)
- Kalyan Biswas
- IMDEA Nanoscience, C/ Faraday 9, Campus de Cantoblanco, Madrid 28049, Spain
| | - Maxence Urbani
- IMDEA Nanoscience, C/ Faraday 9, Campus de Cantoblanco, Madrid 28049, Spain
| | - Ana Sánchez-Grande
- IMDEA Nanoscience, C/ Faraday 9, Campus de Cantoblanco, Madrid 28049, Spain
| | - Diego Soler-Polo
- Institute of Physics of the Czech Academy of Science, Praha 162 00, Czech Republic
| | - Koen Lauwaet
- IMDEA Nanoscience, C/ Faraday 9, Campus de Cantoblanco, Madrid 28049, Spain
| | - Adam Matěj
- Institute of Physics of the Czech Academy of Science, Praha 162 00, Czech Republic.,Regional Centre of Advanced Technologies and Materials, Czech Advanced Technology and Research Institute (CATRIN), Palacký University Olomouc, Olomouc 783 71, Czech Republic
| | - Pingo Mutombo
- Institute of Physics of the Czech Academy of Science, Praha 162 00, Czech Republic
| | - Libor Veis
- J. Heyrovský Institute of Physical Chemistry, Czech Academy of Sciences, Prague 182 00, Czech Republic
| | - Jiri Brabec
- J. Heyrovský Institute of Physical Chemistry, Czech Academy of Sciences, Prague 182 00, Czech Republic
| | - Katarzyna Pernal
- Institute of Physics, Lodz University of Technology, Lodz 90-924, Poland
| | - José M Gallego
- Instituto de Ciencia de Materiales de Madrid, CSIC, Cantoblanco, Madrid 28049, Spain
| | - Rodolfo Miranda
- IMDEA Nanoscience, C/ Faraday 9, Campus de Cantoblanco, Madrid 28049, Spain.,Departamento de Física de La Materia Condensada, Universidad Autónoma de Madrid, Madrid 28049, Spain
| | - David Écija
- IMDEA Nanoscience, C/ Faraday 9, Campus de Cantoblanco, Madrid 28049, Spain
| | - Pavel Jelínek
- Institute of Physics of the Czech Academy of Science, Praha 162 00, Czech Republic.,Regional Centre of Advanced Technologies and Materials, Czech Advanced Technology and Research Institute (CATRIN), Palacký University Olomouc, Olomouc 783 71, Czech Republic
| | - Tomás Torres
- IMDEA Nanoscience, C/ Faraday 9, Campus de Cantoblanco, Madrid 28049, Spain.,Departamento de Química Orgánica and Institute for Advanced Research in Chemistry (IAdChem), Universidad Autónoma de Madrid, Madrid 28049, Spain
| | - José I Urgel
- IMDEA Nanoscience, C/ Faraday 9, Campus de Cantoblanco, Madrid 28049, Spain
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6
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Cao N, Riss A, Corral-Rascon E, Meindl A, Auwärter W, Senge MO, Ebrahimi M, Barth JV. Surface-confined formation of conjugated porphyrin-based nanostructures on Ag(111). NANOSCALE 2021; 13:19884-19889. [PMID: 34842889 DOI: 10.1039/d1nr06451g] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
Porphyrin-based oligomers were synthesized from the condensation of adsorbed 4-benzaldehyde-substituted porphyrins through the formation of CC linkages, following a McMurry-type coupling scheme. Scanning tunneling microscopy, non-contact atomic force microscopy, and X-ray photoelectron spectroscopy data evidence both the dissociation of aldehyde groups and the formation of CC linkages. Our approach provides a path for the on-surface synthesis of porphyrin-based oligomers coupled by CC bridges - as a means to create functional conjugated nanostructures.
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Affiliation(s)
- Nan Cao
- Physics Department E20, Technical University of Munich, Garching D-85748, Germany
| | - Alexander Riss
- Physics Department E20, Technical University of Munich, Garching D-85748, Germany
| | | | - Alina Meindl
- School of Chemistry, Chair of Organic Chemistry, Trinity Biomedical Sciences Institute, Trinity College Dublin, the University of Dublin, 152-160 Pearse Street, Dublin 2, Ireland
| | - Willi Auwärter
- Physics Department E20, Technical University of Munich, Garching D-85748, Germany
- Institute for Advanced Study (TUM-IAS), Technical University of Munich, Focus Group - Molecular and Interfacial Engineering of Organic Nanosystems, Lichtenberg-Str. 2a, 85748 Garching, Germany.
| | - Mathias O Senge
- Institute for Advanced Study (TUM-IAS), Technical University of Munich, Focus Group - Molecular and Interfacial Engineering of Organic Nanosystems, Lichtenberg-Str. 2a, 85748 Garching, Germany.
| | - Maryam Ebrahimi
- Physics Department E20, Technical University of Munich, Garching D-85748, Germany
- Department of Chemistry, Lakehead University, 955 Oliver Road, Thunder Bay, Ontario, P7B 5E1, Canada, M. E. is a Tier 2 Canada Research Chair in Low-Dimensional Nanomaterials.
| | - Johannes V Barth
- Physics Department E20, Technical University of Munich, Garching D-85748, Germany
- Institute for Advanced Study (TUM-IAS), Technical University of Munich, Focus Group - Molecular and Interfacial Engineering of Organic Nanosystems, Lichtenberg-Str. 2a, 85748 Garching, Germany.
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7
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Bellamy-Carter A, Roche C, Anderson HL, Saywell A. Self-assembly of a strapped linear porphyrin oligomer on HOPG. Sci Rep 2021; 11:20388. [PMID: 34650172 PMCID: PMC8516934 DOI: 10.1038/s41598-021-99881-x] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2021] [Accepted: 09/22/2021] [Indexed: 11/10/2022] Open
Abstract
Polymeric structures based on porphyrin units exhibit a range of complex properties, such as nanoscale charge transport and quantum interference effects, and have the potential to act as biomimetic materials for light-harvesting and catalysis. These functionalities are based upon the characteristics of the porphyrin monomers, but are also emergent properties of the extended polymer system. Incorporation of these properties within solid-state devices requires transfer of the polymers to a supporting substrate, and may require a high-degree of lateral order. Here we show that highly ordered self-assembled structures can be formed via a simple solution deposition protocol; for a strapped linear porphyrin oligomer adsorbed on a highly oriented pyrolytic graphite (HOPG) substrate. Two distinct molecule–molecule interactions are observed to drive the formation of two molecular phases (‘Interdigitated’ and ‘Bridge-stabilised’) characterised by scanning tunnelling microscopy, providing information on the unit cell dimensions and self-assembled structure. The concentration dependence of these phases is investigated, and we conclude that the bridge-stabilised phase is a thermodynamically stable structure at room temperature.
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Affiliation(s)
| | - Cécile Roche
- Department of Chemistry, University of Oxford, Oxford, OX1 3TA, UK
| | - Harry L Anderson
- Department of Chemistry, University of Oxford, Oxford, OX1 3TA, UK
| | - Alex Saywell
- School of Physics and Astronomy, University of Nottingham, Nottingham, NG7 2RD, UK.
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8
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Mallada B, Błoński P, Langer R, Jelínek P, Otyepka M, de la Torre B. On-Surface Synthesis of One-Dimensional Coordination Polymers with Tailored Magnetic Anisotropy. ACS APPLIED MATERIALS & INTERFACES 2021; 13:32393-32401. [PMID: 34227386 DOI: 10.1021/acsami.1c04693] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
One-dimensional (1D) metalloporphyrin polymers can exhibit magnetism, depending on the central metal ion and the surrounding ligand field. The possibility of tailoring the magnetic signal in such nanostructures is highly desirable for potential spintronic devices. We present low-temperature (4.2 K) scanning tunneling microscopy and spectroscopy (LT-STM/STS) in combination with high-resolution atomic force microscopy (AFM) and a density functional theory (DFT) study of a two-step synthetic protocol to grow a robust Fe-porphyrin-based 1D polymer on-surface and to tune its magnetic properties. A thermally assisted Ullmann-like coupling reaction of Fe(III)diphenyl-bromine-porphyrin (2BrFeDPP-Cl) on Au(111) in ultra-high vacuum results in long (up to 50 nm) 1D metal-organic wires with regularly distributed magnetic and (electronically) independent porphyrins units, as confirmed by STM images. Thermally controlled C-H bond activation leads to conformational changes in the porphyrin units, which results in molecular planarization steered by 2D surface confinement, as confirmed by high-resolution AFM images. Spin-flip STS images in combination with DFT self-consistent spin-orbit coupling calculations of porphyrin units with different structural conformations reveal that the magnetic anisotropy of the triplet ground state of the central Fe ion units drops down substantially upon intramolecular rearrangements. These results point out to new opportunities for realizing and studying well-defined 1D organic magnets on surfaces and demonstrate the feasibility of tailoring their magnetic properties.
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Affiliation(s)
- Benjamin Mallada
- Regional Centre of Advanced Technologies and Material, Czech Advanced Technology and Research Institute (CATRIN), Palacký University Olomouc, 783 71 Olomouc, Czech Republic
- Institute of Physics, The Czech Academy of Sciences, Cukrovarnická 10, 162 00 Prague, Czech Republic
| | - Piotr Błoński
- Regional Centre of Advanced Technologies and Material, Czech Advanced Technology and Research Institute (CATRIN), Palacký University Olomouc, 783 71 Olomouc, Czech Republic
| | - Rostislav Langer
- Regional Centre of Advanced Technologies and Material, Czech Advanced Technology and Research Institute (CATRIN), Palacký University Olomouc, 783 71 Olomouc, Czech Republic
- Department of Physical Chemistry, Faculty of Science, Palacký University Olomouc, 78371 Olomouc, Czech Republic
| | - Pavel Jelínek
- Regional Centre of Advanced Technologies and Material, Czech Advanced Technology and Research Institute (CATRIN), Palacký University Olomouc, 783 71 Olomouc, Czech Republic
- Institute of Physics, The Czech Academy of Sciences, Cukrovarnická 10, 162 00 Prague, Czech Republic
| | - Michal Otyepka
- Regional Centre of Advanced Technologies and Material, Czech Advanced Technology and Research Institute (CATRIN), Palacký University Olomouc, 783 71 Olomouc, Czech Republic
- IT4Innovations, Technical University of Ostrava, 17. listopadu 2172/15, 708 00 Ostrava-Poruba,Czech Republic
| | - Bruno de la Torre
- Regional Centre of Advanced Technologies and Material, Czech Advanced Technology and Research Institute (CATRIN), Palacký University Olomouc, 783 71 Olomouc, Czech Republic
- Institute of Physics, The Czech Academy of Sciences, Cukrovarnická 10, 162 00 Prague, Czech Republic
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9
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Albrecht F, Rey D, Fatayer S, Schulz F, Pérez D, Peña D, Gross L. Intramolecular Coupling of Terminal Alkynes by Atom Manipulation. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.202009200] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
| | - Dulce Rey
- Centro de Investigación en Química Biolóxica e Materiais, Moleculares (CiQUS) and Departamento de Química Orgánica Universidade de Santiago de Compostela 15782 Santiago de Compostela Spain
| | | | | | - Dolores Pérez
- Centro de Investigación en Química Biolóxica e Materiais, Moleculares (CiQUS) and Departamento de Química Orgánica Universidade de Santiago de Compostela 15782 Santiago de Compostela Spain
| | - Diego Peña
- Centro de Investigación en Química Biolóxica e Materiais, Moleculares (CiQUS) and Departamento de Química Orgánica Universidade de Santiago de Compostela 15782 Santiago de Compostela Spain
| | - Leo Gross
- IBM Research–Zurich 8803 Rüschlikon Switzerland
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10
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Albrecht F, Rey D, Fatayer S, Schulz F, Pérez D, Peña D, Gross L. Intramolecular Coupling of Terminal Alkynes by Atom Manipulation. Angew Chem Int Ed Engl 2020; 59:22989-22993. [PMID: 32845044 PMCID: PMC7756451 DOI: 10.1002/anie.202009200] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2020] [Revised: 08/11/2020] [Indexed: 12/13/2022]
Abstract
Glaser-like coupling of terminal alkynes by thermal activation is extensively used in on-surface chemistry. Here we demonstrate an intramolecular version of this reaction performed by atom manipulation. We used voltage pulses from the tip to trigger a Glaser-like coupling between terminal alkyne carbons within a custom-synthesized precursor molecule adsorbed on bilayer NaCl on Cu(111). Different conformations of the precursor molecule and the product were characterized by molecular structure elucidation with atomic force microscopy and orbital density mapping with scanning tunneling microscopy, accompanied by density functional theory calculations. We revealed partially dehydrogenated intermediates, providing insight into the reaction pathway.
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Affiliation(s)
| | - Dulce Rey
- Centro de Investigación en Química Biolóxica e Materiais, Moleculares (CiQUS) and Departamento de Química Orgánica, Universidade de Santiago de Compostela, 15782, Santiago, de Compostela, Spain
| | | | | | - Dolores Pérez
- Centro de Investigación en Química Biolóxica e Materiais, Moleculares (CiQUS) and Departamento de Química Orgánica, Universidade de Santiago de Compostela, 15782, Santiago, de Compostela, Spain
| | - Diego Peña
- Centro de Investigación en Química Biolóxica e Materiais, Moleculares (CiQUS) and Departamento de Química Orgánica, Universidade de Santiago de Compostela, 15782, Santiago, de Compostela, Spain
| | - Leo Gross
- IBM Research-Zurich, 8803, Rüschlikon, Switzerland
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11
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Structural characterisation of molecular conformation and the incorporation of adatoms in an on-surface Ullmann-type reaction. Commun Chem 2020; 3:166. [PMID: 36703404 PMCID: PMC9814584 DOI: 10.1038/s42004-020-00402-0] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2020] [Accepted: 10/08/2020] [Indexed: 01/29/2023] Open
Abstract
The on-surface synthesis of covalently bonded materials differs from solution-phase synthesis in several respects. The transition from a three-dimensional reaction volume to quasi-two-dimensional confinement, as is the case for on-surface synthesis, has the potential to facilitate alternative reaction pathways to those available in solution. Ullmann-type reactions, where the surface plays a role in the coupling of aryl-halide functionalised species, has been shown to facilitate extended one- and two-dimensional structures. Here we employ a combination of scanning tunnelling microscopy (STM), X-ray photoelectron spectroscopy (XPS) and X-ray standing wave (XSW) analysis to perform a chemical and structural characterisation of the Ullmann-type coupling of two iodine functionalised species on a Ag(111) surface held under ultra-high vacuum (UHV) conditions. Our results allow characterisation of molecular conformations and adsorption geometries within an on-surface reaction and provide insight into the incorporation of metal adatoms within the intermediate structures of the reaction.
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12
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Tashiro K, Yamazaki S. Photocatalysis of ZnTPyP fibers fabricated by surfactant-assisted method: Effect of surfactant and kinetic studies. Colloids Surf A Physicochem Eng Asp 2019. [DOI: 10.1016/j.colsurfa.2019.123741] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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13
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Yu Y, Li Y, Li Y, Wang H, Zuo Q, Duan Q. A 1D porphyrin-based rigid conjugated polymer as efficient and recyclable visible-light driven photocatalyst. REACT FUNCT POLYM 2019. [DOI: 10.1016/j.reactfunctpolym.2019.104340] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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14
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Sun X, Yao X, Lafolet F, Lemercier G, Lacroix JC. One-Dimensional Double Wires and Two-Dimensional Mobile Grids: Cobalt/Bipyridine Coordination Networks at the Solid/Liquid Interface. J Phys Chem Lett 2019; 10:4164-4169. [PMID: 31265312 DOI: 10.1021/acs.jpclett.9b01292] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Various architectures have been generated and observed by STM at a solid/liquid interface resulting from an in situ chemical reaction between the bipyridine terminal groups of a ditopic ligand and Co(II) ions. Large monodomains of one-dimensional (1D) double wires are formed by Co(II)/ligand coordination, with polymer lengths as long as 150 nm. The polymers are organized as parallel wires 8 nm apart, and the voids between wires are occupied by solvent molecules. Two-dimensional (2D) grids, showing high surface mobility, coexist with the wires. The wires are formed from linear chain motifs where each cobalt center is bonded to two bipyridines. 2D grids are generated from a bifurcation node where one cobalt bonds to three bipyridines. Surface reconstruction of the grids and of the 1D wires was observed under the STM tip. As an exciting result, analysis of these movements strongly indicates surface reactions at the solid/liquid interface.
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Affiliation(s)
- Xiaonan Sun
- Université de Paris , ITODYS , CNRS, UMR 7086, 15 rue J-A de Baïf , F-75013 Paris , France
| | - Xinlei Yao
- Université de Paris , ITODYS , CNRS, UMR 7086, 15 rue J-A de Baïf , F-75013 Paris , France
| | - Frédéric Lafolet
- Université de Paris , ITODYS , CNRS, UMR 7086, 15 rue J-A de Baïf , F-75013 Paris , France
| | - Gilles Lemercier
- Université de Paris , ITODYS , CNRS, UMR 7086, 15 rue J-A de Baïf , F-75013 Paris , France
- Université Reims Champagne-Ardennes , Institut Chimie Moléculaire Reims , CNRS UMR 7312, 56187 Reims Cedex 2, France
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15
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Abstract
On-surface synthesis provides a route for the production of 1D and 2D covalently bonded polymeric structures. Such reactions are confined to the surface of a substrate and the catalytic properties of the substrate are often utilised to initiate the reaction. Recent studies have focused on the properties of various crystallographic planes of metallic substrates, as well as native surface features such as step-edges, in an effort to provide control over the pathway of the reaction and the resultant products. An alternative approach is to template the catalytic surface with a porous molecular overlayer; giving rise to well-defined surface regions within which an on-surface reaction may be confined. Here we present a methodology where macromolecular templates are used to confine an on-surface reaction. Cyclic porphyrin polymers, nanorings - consisting of 40 porphyrin units with internal diameter 13 nm, are used to form a template on a Au(111) surface, and an on-surface Ullmann-type coupling reaction is initiated within the nanoring template. The surface confined template and covalently coupled reaction products are investigated and characterised with scanning tunnelling microscopy.
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16
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Goronzy DP, Ebrahimi M, Rosei F, Fang Y, De Feyter S, Tait SL, Wang C, Beton PH, Wee ATS, Weiss PS, Perepichka DF. Supramolecular Assemblies on Surfaces: Nanopatterning, Functionality, and Reactivity. ACS NANO 2018; 12:7445-7481. [PMID: 30010321 DOI: 10.1021/acsnano.8b03513] [Citation(s) in RCA: 145] [Impact Index Per Article: 24.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
Abstract
Understanding how molecules interact to form large-scale hierarchical structures on surfaces holds promise for building designer nanoscale constructs with defined chemical and physical properties. Here, we describe early advances in this field and highlight upcoming opportunities and challenges. Both direct intermolecular interactions and those that are mediated by coordinated metal centers or substrates are discussed. These interactions can be additive, but they can also interfere with each other, leading to new assemblies in which electrical potentials vary at distances much larger than those of typical chemical interactions. Earlier spectroscopic and surface measurements have provided partial information on such interfacial effects. In the interim, scanning probe microscopies have assumed defining roles in the field of molecular organization on surfaces, delivering deeper understanding of interactions, structures, and local potentials. Self-assembly is a key strategy to form extended structures on surfaces, advancing nanolithography into the chemical dimension and providing simultaneous control at multiple scales. In parallel, the emergence of graphene and the resulting impetus to explore 2D materials have broadened the field, as surface-confined reactions of molecular building blocks provide access to such materials as 2D polymers and graphene nanoribbons. In this Review, we describe recent advances and point out promising directions that will lead to even greater and more robust capabilities to exploit designer surfaces.
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Affiliation(s)
- Dominic P Goronzy
- California NanoSystems Institute , University of California, Los Angeles , Los Angeles , California 90095 , United States
- Department of Chemistry and Biochemistry , University of California, Los Angeles , Los Angeles , California 90095 , United States
| | - Maryam Ebrahimi
- INRS Centre for Energy, Materials and Telecommunications , 1650 Boul. Lionel Boulet , Varennes , Quebec J3X 1S2 , Canada
| | - Federico Rosei
- INRS Centre for Energy, Materials and Telecommunications , 1650 Boul. Lionel Boulet , Varennes , Quebec J3X 1S2 , Canada
- Institute for Fundamental and Frontier Science , University of Electronic Science and Technology of China , Chengdu 610054 , P.R. China
| | - Yuan Fang
- Department of Chemistry , McGill University , Montreal H3A 0B8 , Canada
| | - Steven De Feyter
- Department of Chemistry , KU Leuven , Celestijnenlaan 200F , Leuven 3001 , Belgium
| | - Steven L Tait
- Department of Chemistry , Indiana University , Bloomington , Indiana 47405 , United States
| | - Chen Wang
- National Center for Nanoscience and Technology , Beijing 100190 , China
| | - Peter H Beton
- School of Physics & Astronomy , University of Nottingham , Nottingham NG7 2RD , United Kingdom
| | - Andrew T S Wee
- Department of Physics , National University of Singapore , 117542 Singapore
| | - Paul S Weiss
- California NanoSystems Institute , University of California, Los Angeles , Los Angeles , California 90095 , United States
- Department of Chemistry and Biochemistry , University of California, Los Angeles , Los Angeles , California 90095 , United States
- Department of Materials Science and Engineering , University of California, Los Angeles , Los Angeles , California 90095 , United States
| | - Dmitrii F Perepichka
- California NanoSystems Institute , University of California, Los Angeles , Los Angeles , California 90095 , United States
- Department of Chemistry , McGill University , Montreal H3A 0B8 , Canada
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17
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Judd CJ, Haddow SL, Champness NR, Saywell A. Ullmann Coupling Reactions on Ag(111) and Ag(110); Substrate Influence on the Formation of Covalently Coupled Products and Intermediate Metal-Organic Structures. Sci Rep 2017; 7:14541. [PMID: 29109400 PMCID: PMC5674052 DOI: 10.1038/s41598-017-13315-1] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2017] [Accepted: 09/20/2017] [Indexed: 11/29/2022] Open
Abstract
On-surface reactions based on Ullmann coupling are known to proceed on coinage-metal substrates (e.g. Au, Ag, Cu), with the chemistry of the surface strongly influencing the reaction progression. In addition, the topography of the surface may be expected to affect the local adsorption geometry of the reactants as well as the intermediate and final structures. Here, we investigate the effect of two different surface facets of silver, Ag(111) and Ag(110) on the formation of organometallic and covalent structures for Ullmann-type coupling reactions. Deposition of 4,4”-diiodo-m-terphenyl molecules onto either Ag(111) or Ag(110) surfaces leads to the scission of C-I bonds followed by the formation of organometallic zigzag structures, consisting of molecules connected by coordination bonds to Ag adatoms. The covalently coupled product is formed by annealing each surface, leading to the removal of Ag atoms and the formation of covalently bonded zigzag poly(m-phenylene) structures. Comparisons of the adsorption model of molecules on each surface before and after annealing reveal that on Ag(111), structures rearrange by rotation and elongation of bonds in order to become commensurate with the surface, whereas for the Ag(110) surface, the similarity in adsorption geometry of the intermediate and final states means that no rotation is required.
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Affiliation(s)
- Chris J Judd
- School of Physics and Astronomy, The University of Nottingham, Nottingham, NG7 2RD, UK
| | - Sarah L Haddow
- School of Chemistry, The University of Nottingham, Nottingham, NG7 2RD, UK
| | - Neil R Champness
- School of Chemistry, The University of Nottingham, Nottingham, NG7 2RD, UK
| | - Alex Saywell
- School of Physics and Astronomy, The University of Nottingham, Nottingham, NG7 2RD, UK.
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18
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Mali KS, Pearce N, De Feyter S, Champness NR. Frontiers of supramolecular chemistry at solid surfaces. Chem Soc Rev 2017; 46:2520-2542. [DOI: 10.1039/c7cs00113d] [Citation(s) in RCA: 168] [Impact Index Per Article: 24.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
Supramolecular chemistry on solid surfaces represents an exciting field of research that continues to develop in new and unexpected directions.
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Affiliation(s)
- Kunal S. Mali
- Division of Molecular Imaging and Photonics
- Department of Chemistry
- KU Leuven – University of Leuven
- B3001 Leuven
- Belgium
| | | | - Steven De Feyter
- Division of Molecular Imaging and Photonics
- Department of Chemistry
- KU Leuven – University of Leuven
- B3001 Leuven
- Belgium
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19
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Li N, Gu G, Zhang X, Song D, Zhang Y, Teo BK, Peng LM, Hou S, Wang Y. Packing fractal Sierpiński triangles into one-dimensional crystals via a templating method. Chem Commun (Camb) 2017; 53:3469-3472. [DOI: 10.1039/c7cc00566k] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Crystalline structures with Sierpiński triangles as building blocks were constructedviaa templating method in ultra-high vacuum and studied by low-temperature scanning tunneling microscopy.
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Affiliation(s)
- Na Li
- Key Laboratory for the Physics and Chemistry of Nanodevices
- Department of Electronics
- Peking University
- Beijing 100871
- China
| | - Gaochen Gu
- Key Laboratory for the Physics and Chemistry of Nanodevices
- Department of Electronics
- Peking University
- Beijing 100871
- China
| | - Xue Zhang
- Key Laboratory for the Physics and Chemistry of Nanodevices
- Department of Electronics
- Peking University
- Beijing 100871
- China
| | - Daoliang Song
- Key Laboratory for the Physics and Chemistry of Nanodevices
- Department of Electronics
- Peking University
- Beijing 100871
- China
| | - Yajie Zhang
- Key Laboratory for the Physics and Chemistry of Nanodevices
- Department of Electronics
- Peking University
- Beijing 100871
- China
| | - Boon K. Teo
- Key Laboratory for the Physics and Chemistry of Nanodevices
- Department of Electronics
- Peking University
- Beijing 100871
- China
| | - Lian-mao Peng
- Key Laboratory for the Physics and Chemistry of Nanodevices
- Department of Electronics
- Peking University
- Beijing 100871
- China
| | - Shimin Hou
- Key Laboratory for the Physics and Chemistry of Nanodevices
- Department of Electronics
- Peking University
- Beijing 100871
- China
| | - Yongfeng Wang
- Key Laboratory for the Physics and Chemistry of Nanodevices
- Department of Electronics
- Peking University
- Beijing 100871
- China
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