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Pass M, Dorosti N, Krautscheid H. New lanthanum (III) complexes containing azaphosphor β-diketon and diimine ligands: Synthesis, crystallography, morphology properties, DNA binding, DNA cleavage, and DFT calculation. Int J Biol Macromol 2025; 290:138998. [PMID: 39708856 DOI: 10.1016/j.ijbiomac.2024.138998] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2024] [Revised: 12/13/2024] [Accepted: 12/17/2024] [Indexed: 12/23/2024]
Abstract
Two octa-coordinated lanthanum (III) complexes of deprotonated azaphosphor β-diketon and diimine ligands, [LnL3Q] (L = [Cl2CHC(O)NP(O)(NC6H12)2], Q = Phen (C1) and Bipy (C2)), were synthesized and characterized by elemental analysis, IR, and NMR spectra. X-ray crystallography revealed a distorted tetragonal antiprism LaO6N2 coordination geometry around the lanthanum atom in both compounds. Nano-sized complexes (Ć1 and Ć2) were synthesized via a sonochemical process and analyzed using SEM and XRPD. TGA-DTA analysis were performed on complexes in both bulk and nano scales. Redox behavior was also examined by cyclic voltammetry. The interaction between the complexes and calf thymus DNA (ct-DNA) was investigated using UV-Vis spectroscopy, fluorescence titration, viscosity measurements, and gel electrophoresis. C2 and Ć2 likely intercalate between DNA base pairs through van der Waals forces and hydrogen bonding, whereas C1 and Ć1 interact with DNA via groove binding. Further, result indicated the apparent association constant (Kapp) in the range of 4.53 × 104 M-1-26.86 × 104 M-1 with the highest value for nanocomplex Ć2. Fluorescence studies revealed dynamic and static quenching for C1, while the other compounds followed a static quenching process. Hirshfeld surface analysis and the NCI method were employed to demonstrate how non-covalent interactions influence the crystal packing through intermolecular interactions.
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Affiliation(s)
- Maryam Pass
- Department of Inorganic Chemistry, Faculty of Chemistry, Lorestan University, Khorramabad, Iran
| | - Niloufar Dorosti
- Department of Inorganic Chemistry, Faculty of Chemistry, Lorestan University, Khorramabad, Iran.
| | - Harald Krautscheid
- Faculty of Chemistry and Mineralogy, Universität Leipzig, Johannisallee 29, Leipzig 04103, Germany
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2
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Is the phosphorous atom a stereogenic center? Crystallographic findings in five new dithiophosphonate compounds supported with non covalent interaction index (NCI), theoretical approach and spectroscopic analysis. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.133987] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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3
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Biggio D, Fantauzzi M, Elsener B, Atzei D, Rossi A. The role of organic compounds in artificial saliva for corrosion studies: evidence from XPS analyses. SURF INTERFACE ANAL 2022. [DOI: 10.1002/sia.7149] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Deborah Biggio
- Dipartimento di Scienze Chimiche e Geologiche Università di Cagliari Cagliari Italy
| | - Marzia Fantauzzi
- Dipartimento di Scienze Chimiche e Geologiche Università di Cagliari Cagliari Italy
| | - Bernhard Elsener
- Dipartimento di Scienze Chimiche e Geologiche Università di Cagliari Cagliari Italy
| | - Davide Atzei
- Dipartimento di Scienze Chimiche e Geologiche Università di Cagliari Cagliari Italy
| | - Antonella Rossi
- Dipartimento di Scienze Chimiche e Geologiche Università di Cagliari Cagliari Italy
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4
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Kaab omeyr A, Dorosti N. THEORETICAL STUDIES ON STRUCTURE-DIRECTING INTERACTIONS OF DIPHENYL N-(2-PYRAZINYL CARBONYL) PHOSPHORAMIDATE. J STRUCT CHEM+ 2022. [DOI: 10.1134/s0022476622010140] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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5
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Shahabadi N, Shiri F, Hadidi S, Farshadfar K, Darbemamieh M, Mark Roe S. The role of both intercalation and groove binding at AT-rich DNA regions in the interaction process of a dinuclear Cu(I) complex probed by spectroscopic and simulation analysis. J Mol Liq 2021. [DOI: 10.1016/j.molliq.2021.116290] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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6
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Zheng Y, Herbers S, Gou Q, Caminati W, Grabow JU. Chlorine "Equatorial Belt" Activation of CF 3Cl by CO 2: The C···Cl Tetrel Bond Dominance in CF 3Cl-CO 2. J Phys Chem Lett 2021; 12:3907-3913. [PMID: 33861087 DOI: 10.1021/acs.jpclett.1c00837] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
Besides its typical halogen donor behavior (exhibiting a Cl σ-hole) in forming Cl···B halogen bonds (B is an electron-rich region), CF3Cl reveals a new interaction site in its complex with CO2 when explored by rotational spectroscopy. Experimental evidence and theoretical analyses point out irrefutably that CF3Cl prefers to link to CO2 through its Cl "equatorial belt" consisting of the lone pairs of the Cl atom, resulting in a C···Cl tetrel bond. In addition, a secondary plausible C···O tetrel bond and a F···O halogen bond might contribute to the relative orientation of the moieties forming the complex. The effects of the Cl "equatorial belt" present in perhalogenated molecules, such as CF3Cl, have been hitherto overlooked in describing the origin of noncovalent interactions. That left a significant void that the present study tries to fill by outlining its importance.
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Affiliation(s)
- Yang Zheng
- Department of Chemistry, School of Chemistry and Chemical Engineering, Chongqing University, No. 55 Daxuecheng South Road, Shapingba, Chongqing, 401331, China
| | - Sven Herbers
- Department of Chemistry, School of Chemistry and Chemical Engineering, Chongqing University, No. 55 Daxuecheng South Road, Shapingba, Chongqing, 401331, China
| | - Qian Gou
- Department of Chemistry, School of Chemistry and Chemical Engineering, Chongqing University, No. 55 Daxuecheng South Road, Shapingba, Chongqing, 401331, China
| | - Walther Caminati
- Dipartimento di Chimica "G. Ciamician", Università di Bologna Via Selmi 2, I-40126 Bologna, Italy
| | - Jens-Uwe Grabow
- Institut für Physikalische Chemie & Elektrochemie Leibniz, Universität Hannover Callinstraβe 3A, 30167 Hannover, Germany
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7
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Sarkar S, Ghosh SR, Brandão P, Jana AD. Role of imidazole edge to edge supramolecular interaction in the crystal packing of Cu(II)(SCN−)2(imidazole)2 complex: A novel variety of supramolecular interaction revealed by CCDC database analysis and explored through DFT computational studies. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2020.129513] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
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8
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Mahesha, Pampa KJ, Karthik CS, Hema MK, Mallu P, Lokanath NK. Post-synthetic modification of supramolecular assemblies of β-diketonato Cu( ii) complexes: comparing and contrasting the molecular topology by crystal structure and quantum computational studies. CrystEngComm 2021. [DOI: 10.1039/d1ce00304f] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Abstract
Solvent-induced structural transformations on the metal coordination sphere in homoleptic (1 and 2) and heteroleptic (3 and 4) Cu(ii) complexes were analyzed and investigated by crystallographic and quantum computational studies.
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Affiliation(s)
- Mahesha
- Department of Studies in Physics
- University of Mysore
- Mysuru-570 006
- India
| | - K. J. Pampa
- Department of Biotechnology
- University of Mysore
- Mysuru-570 006
- India
| | - C. S. Karthik
- Department of Chemistry
- SJCE
- JSS Science and Technology University
- Mysuru-570 006
- India
| | - M. K. Hema
- Department of Studies in Physics
- University of Mysore
- Mysuru-570 006
- India
| | - P. Mallu
- Department of Chemistry
- SJCE
- JSS Science and Technology University
- Mysuru-570 006
- India
| | - N. K. Lokanath
- Department of Studies in Physics
- University of Mysore
- Mysuru-570 006
- India
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9
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Bassey EN, Paddison JAM, Keyzer EN, Lee J, Manuel P, da Silva I, Dutton SE, Grey CP, Cliffe MJ. Strengthening the Magnetic Interactions in Pseudobinary First-Row Transition Metal Thiocyanates, M(NCS) 2. Inorg Chem 2020; 59:11627-11639. [PMID: 32799496 DOI: 10.1021/acs.inorgchem.0c01478] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Understanding the effect of chemical composition on the strength of magnetic interactions is key to the design of magnets with high operating temperatures. The magnetic divalent first-row transition metal (TM) thiocyanates are a class of chemically simple layered molecular frameworks. Here, we report two new members of the family, manganese(II) thiocyanate, Mn(NCS)2, and iron(II) thiocyanate, Fe(NCS)2. Using magnetic susceptibility measurements on these materials and on cobalt(II) thiocyanate and nickel(II) thiocyanate, Co(NCS)2 and Ni(NCS)2, respectively, we identify significantly stronger net antiferromagnetic interactions between the earlier TM ions-a decrease in the Weiss constant, θ, from 29 K for Ni(NCS)2 to -115 K for Mn(NCS)2-a consequence of more diffuse 3d orbitals, increased orbital overlap, and increasing numbers of unpaired t2g electrons. We elucidate the magnetic structures of these materials: Mn(NCS)2, Fe(NCS)2, and Co(NCS)2 order into the same antiferromagnetic commensurate ground state, while Ni(NCS)2 adopts a ground state structure consisting of ferromagnetically ordered layers stacked antiferromagnetically. We show that significantly stronger exchange interactions can be realized in these thiocyanate frameworks by using earlier TMs.
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Affiliation(s)
- Euan N Bassey
- Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge, CB2 1EW, United Kingdom
| | - Joseph A M Paddison
- Churchill College, University of Cambridge, Storey's Way, Cambridge, CB3 0DS, United Kingdom.,Cavendish Laboratory, Department of Physics, University of Cambridge, JJ Thompson Avenue, Cambridge, CB3 0HE, United Kingdom.,Materials Science & Technology Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States of America
| | - Evan N Keyzer
- Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge, CB2 1EW, United Kingdom
| | - Jeongjae Lee
- Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge, CB2 1EW, United Kingdom.,School of Earth and Environmental Sciences, Seoul National University, Seoul 08826, Korea
| | - Pascal Manuel
- ISIS Facility, STFC Rutherford Appleton Laboratory, Harwell Oxford, Didcot, OX11 0QX, United Kingdom
| | - Ivan da Silva
- ISIS Facility, STFC Rutherford Appleton Laboratory, Harwell Oxford, Didcot, OX11 0QX, United Kingdom
| | - Siân E Dutton
- Cavendish Laboratory, Department of Physics, University of Cambridge, JJ Thompson Avenue, Cambridge, CB3 0HE, United Kingdom
| | - Clare P Grey
- Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge, CB2 1EW, United Kingdom
| | - Matthew J Cliffe
- Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge, CB2 1EW, United Kingdom.,School of Chemistry, University Park, Nottingham, NG7 2RD, United Kingdom
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10
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Shahabadi N, Shiri F, Hadidi S, Farshadfar K, Sajadimajd S, Roe SM. Equilibrium and site selective analysis for DNA threading intercalation of a new phosphine copper(I) complex: Insights from X-ray analysis, spectroscopic and molecular modeling studies. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2020; 235:118280. [PMID: 32248034 DOI: 10.1016/j.saa.2020.118280] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/28/2019] [Revised: 03/18/2020] [Accepted: 03/18/2020] [Indexed: 06/11/2023]
Abstract
To clarify the interaction of phosphine copper(I) complex with DNA, our study reports the synthesis of a new phosphine copper(I) complex, along with a detailed analysis of the geometry characterization and its interaction with double-stranded DNA. The triclinic phase Cu(PPh3)2(L)(I) with a tetrahedral geometry was identified as the product of the reaction of copper(I) iodide with (E,E)-N,N'-1,2-Ethanediylbis[1-(3-pyridinyl)methanimine] ligand and triphenylphosphine by single-crystal X-ray analysis. Molecular interaction of the synthesized complex with the calf thymus deoxyribonucleic acid (ct-DNA) was investigated in the physiological buffer (pH 7.4) by multi-spectroscopic approaches associated with a competitive displacement towards Hoechst 33258 and methylene blue (MB) as groove and intercalator probes. The fluorescence and UV/Vis results detected the formation of a complex-DNA adduct in the ground-state with a binding affinity in order of 104 M-1, which is in keeping with both groove binders and intercalators. The thermodynamic parameters, ΔS0 = -200.31 ± 0.08 cal/mol·K and ΔH0 = -63.11 ± 0.24 kcal/mol, confirmed that the van der Waals interaction is the main driving force for the binding process. Moreover, the ionic strength and pH effect experiments demonstrated the electrostatic interactions between the complex and DNA is negligible. Analysis of the molecular docking simulation declared the flat (E,E)-N,N'-1,2-Ethanediylbis[1-(3-pyridinyl)methanimine] part of the complex was inserted between the sequential A…T/A…T base pairs, while the phosphine substituents were located in the groove, i.e. threading intercalation. Besides, the cytotoxicity of the complex against the MCF-7 human breast cancer cells was detected at IC50 = 10 μg/mL.
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Affiliation(s)
- Nahid Shahabadi
- Department of Inorganic Chemistry, Faculty of Chemistry, Razi University, Kermanshah, Iran; Medical Biology Research Center (MBRC), Kermanshah University of Medical Sciences, Kermanshah, Iran.
| | - Farshad Shiri
- Department of Inorganic Chemistry, Faculty of Chemistry, Razi University, Kermanshah, Iran; Medical Biology Research Center (MBRC), Kermanshah University of Medical Sciences, Kermanshah, Iran
| | - Saba Hadidi
- Department of Inorganic Chemistry, Faculty of Chemistry, Razi University, Kermanshah, Iran
| | - Kaveh Farshadfar
- Department of Chemistry, Islamic Azad University, Central Tehran Branch, Poonak, Tehran 1469669191, Iran
| | | | - S Mark Roe
- Department of Chemistry, School of Life Sciences, University of Sussex, Brighton BN1 9QJ, UK
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11
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Impact of pyridine-2-carboxaldehyde-derived aroylhydrazones on the copper-catalyzed oxidation of the M112A PrP103–112 mutant fragment. J Biol Inorg Chem 2019; 24:1231-1244. [DOI: 10.1007/s00775-019-01700-2] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2019] [Accepted: 07/23/2019] [Indexed: 12/30/2022]
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12
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Two Cu(I) complexes based on semicarbazone ligand: synthesis, crystal structure, Hirshfeld surface and anticancer activity evaluation against human cell lines. Struct Chem 2019. [DOI: 10.1007/s11224-019-01379-w] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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13
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Gholivand K, Tizhoush SK, Kozakiewicz A, Eskandari K, Farshadfar K. Copper( i) complexes of functionalized sulfur-containing ligands: structural and theoretical insights into chalcogen bonding. CrystEngComm 2019. [DOI: 10.1039/c8ce02006j] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Four new copper(i) thiocyanate complexes were studied using geometrical parameters and the lump–hole approach for justification of the strength and nature of chalcogen bonding.
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Affiliation(s)
- Khodayar Gholivand
- Department of Chemistry
- Faculty of Science
- Tarbiat Modares University
- Tehran
- Iran
| | - Samaneh K. Tizhoush
- Department of Chemistry
- Faculty of Science
- Tarbiat Modares University
- Tehran
- Iran
| | - Anna Kozakiewicz
- Faculty of Chemistry
- Nicolaus Copernicus University in Toruń
- 87-100 Toruń
- Poland
| | - Kiamars Eskandari
- Department of Chemistry
- Isfahan University of Technology
- Isfahan 84156-83111
- Iran
| | - Kaveh Farshadfar
- Department of Chemistry
- Faculty of Science
- Tarbiat Modares University
- Tehran
- Iran
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14
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Mao S, Han X, Li C, Xu Y, Shen K, Shi X, Wu H. Cu(I) complexes regulated by N-heterocyclic ligands: Syntheses, structures, fluorescence and electrochemical properties. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2018; 203:408-414. [PMID: 29894953 DOI: 10.1016/j.saa.2018.06.003] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/29/2017] [Revised: 05/29/2018] [Accepted: 06/01/2018] [Indexed: 06/08/2023]
Abstract
Three mononuclear Cu(I) complexes, namely, [Cu(2-PBO)(PPh3)2]·ClO4·2CH2Cl2 (1), [Cu(3-PBO)(PPh3)2(ClO4)]·CH2Cl2 (2) and [Cu(PBM)(PPh3)2]·ClO4 (3) (2-PBO = 2-(2'-Pyridyl)benzoxazole, 3-PBO = 2-(3'-Pyridyl)benzoxazole, PBM = 2-(2'-Pyridyl)benzimidazole, PPh3 = triphenylphosphine) have been synthesized and characterized by elemental analyses, IR, 1H NMR, 13C NMR, X-ray single crystal diffraction and thermal analysis. Photoluminescent investigation shows that complexes 1-3 exhibit distinct tunable light green (512 nm)-to-yellow (557 nm) photoluminescence by varying the N-heterocyclic ligands. Three complexes show intense 2-PBO-based yellow, 3-PBO-based light green and intense PBM-based bright green luminescence upon irradiation with a standard UV lamp (λex = 254 nm) at room temperature. Moreover, the electrochemical properties of 1-3 have been investigated by cyclic voltammetry. The results suggest the frontier molecular orbits and the HOMO-LUMO energy gaps of these cuprous complexes are effectively adjusted through the introduction of different N-heterocyclic ligands, thus achieving the selective luminescence of the cuprous complexes.
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Affiliation(s)
- Shanshan Mao
- School of Chemical and Biological Engineering, Lanzhou Jiaotong University, Lanzhou, Gansu 730070, People's Republic of China
| | - Xintong Han
- School of Chemical and Biological Engineering, Lanzhou Jiaotong University, Lanzhou, Gansu 730070, People's Republic of China
| | - Chuang Li
- School of Chemical and Biological Engineering, Lanzhou Jiaotong University, Lanzhou, Gansu 730070, People's Republic of China
| | - Yuling Xu
- School of Chemical and Biological Engineering, Lanzhou Jiaotong University, Lanzhou, Gansu 730070, People's Republic of China
| | - Kesheng Shen
- School of Chemical and Biological Engineering, Lanzhou Jiaotong University, Lanzhou, Gansu 730070, People's Republic of China
| | - Xinkui Shi
- School of Chemical and Biological Engineering, Lanzhou Jiaotong University, Lanzhou, Gansu 730070, People's Republic of China
| | - Huilu Wu
- School of Chemical and Biological Engineering, Lanzhou Jiaotong University, Lanzhou, Gansu 730070, People's Republic of China.
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15
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Xu Y, Mao S, Shen K, Shi X, Wu H, Tang X. Different structures of two Cu(I) complexes constructed by bridging 2,2-(1,4-butanediyl)bis-1,3-benzoxazole ligand: Syntheses, structures and properties. Inorganica Chim Acta 2018. [DOI: 10.1016/j.ica.2017.10.023] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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16
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Piltan M, Farshadfar K, Roe SM. Halogen Bonds Involved in Copper(I) Complexes: A Study Based on the Electronic Charge Density. Eur J Inorg Chem 2017. [DOI: 10.1002/ejic.201700369] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Mohammad Piltan
- Department of Chemistry Faculty of Science, Sanandaj Branch Islamic Azad University Sanandaj Iran
| | - Kaveh Farshadfar
- Department of Chemistry Faculty of Science, Sanandaj Branch Islamic Azad University Sanandaj Iran
| | - S. Mark Roe
- Department of Chemistry School of Life Sciences University of Sussex BN1 9QJ Brighton UK
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17
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Gholivand K, Hosseini M, Ebrahimi Valmoozi AA, Farshadfar K. Polymorphism, pseudo-polymorphism, and conformerism in the crystal structure of piperazine-N,N′-bis(N,O-diphenyl phosphoramidate). CrystEngComm 2017. [DOI: 10.1039/c7ce00039a] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
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