Influence of riboflavin on the oxidation kinetics of unsaturated fatty acids at the air/aqueous interface revealed by sum frequency generation vibrational spectroscopy

Light on the interactions between nanoparticles and lipid membranes by interface-sensitive vibrational spectroscopy

Nanoparticles are produced in natural phenomena or synthesized artificially for technological applications. Their frequent contact with humans has been judged potentially harmful for health, and numerous studies are ongoing to understand the mechanisms of the toxicity of nanoparticles. At the macroscopic level, the toxicity can be established in vitro or in vivo by measuring the survival of cells. At the sub-microscopic level, scientists want to unveil the molecular mechanisms of the first interactions of nanoparticles with cells via the cell membrane, before the toxicity cascades within the whole cell. Unveiling a molecular understanding of the nanoparticle-membrane interface is a tricky challenge, because of the chemical complexity of this system and its nanosized dimensions buried within bulk macroscopic environments. In this review, we highlight how, in the last 10 years, second-order nonlinear optical (NLO) spectroscopy, and specifically vibrational sum frequency generation (SFG), has provided a new understanding of the structural, physicochemical, and dynamic properties of these biological interfaces, with molecular sensitivity. We will show how the intrinsic interfacial sensitivity of second-order NLO and the chemical information of vibrational SFG spectroscopy have revealed new knowledge of the molecular mechanisms that drive nanoparticles to interact with cell membranes, from both sides, the nanoparticles and the membrane properties.

Reconstructing the transcriptional regulatory network of probiotic L. reuteri is enabled by transcriptomics and machine learning

Limosilactobacillus reuteri, a probiotic microbe instrumental to human health and sustainable food production, adapts to diverse environmental shifts via dynamic gene expression. We applied the independent component analysis (ICA) to 117 RNA-seq data sets to decode its transcriptional regulatory network (TRN), identifying 35 distinct signals that modulate specific gene sets. Our findings indicate that the ICA provides a qualitative advancement and captures nuanced relationships within gene clusters that other methods may miss. This study uncovers the fundamental properties of L. reuteri's TRN and deepens our understanding of its arginine metabolism and the co-regulation of riboflavin metabolism and fatty acid conversion. It also sheds light on conditions that regulate genes within a specific biosynthetic gene cluster and allows for the speculation of the potential role of isoprenoid biosynthesis in L. reuteri's adaptive response to environmental changes. By integrating transcriptomics and machine learning, we provide a system-level understanding of L. reuteri's response mechanism to environmental fluctuations, thus setting the stage for modeling the probiotic transcriptome for applications in microbial food production.

IMPORTANCE

We have studied Limosilactobacillus reuteri, a beneficial probiotic microbe that plays a significant role in our health and production of sustainable foods, a type of foods that are nutritionally dense and healthier and have low-carbon emissions compared to traditional foods. Similar to how humans adapt their lifestyles to different environments, this microbe adjusts its behavior by modulating the expression of genes. We applied machine learning to analyze large-scale data sets on how these genes behave across diverse conditions. From this, we identified 35 unique patterns demonstrating how L. reuteri adjusts its genes based on 50 unique environmental conditions (such as various sugars, salts, microbial cocultures, human milk, and fruit juice). This research helps us understand better how L. reuteri functions, especially in processes like breaking down certain nutrients and adapting to stressful changes. More importantly, with our findings, we become closer to using this knowledge to improve how we produce more sustainable and healthier foods with the help of microbes.

Enhanced Sum Frequency Generation for Monolayers on Au Relative to Silica: Local Field Factors and SPR Effect

Using metals as signal magnified substrates, surface plasmon-enhanced sum frequency generation (SFG) vibrational spectroscopy is a promising technique to probe weak molecular-level signals at surfaces and interfaces. In this study, the vibrational signals of the n-alkane monolayer on the gold (Au) and silica substrates are investigated using the broadband femtosecond SFG. The enhancement factors are discovered to be up to ∼1076 and ∼31 for the methyl symmetric and asymmetric stretching (ss and as) modes of the monolayer, respectively. By systematically analyzing the second-order nonlinear susceptibility tensor components (χ_ijks), the Fresnel coefficients (F_ijks), and the surface plasmon resonance (SPR) effect, we find that the interplay between F_ijk and χ_ijk terms and the SPR effect dominate the SFG signal enhancement. Our study reveals that the relative contributions of different influencing factors (i.e., Fresnel coefficients and SPR) to the SFG signal enhancement provide an approach to interpreting enhanced SFG vibrational signals detected from probe molecules on distinct substrates and may finally guide the design of the experimental methodology to improve the detection sensitivity and signal-to-noise ratio.

Sum frequency spectroscopy studies on cell membrane fusion induced by divalent cations

Cell membrane fusion is a fundamental biological process involved in a number of cellular living functions. Regarding this, divalent cations can induce fusion of the lipid bilayers through binding and bridging of divalent cations to the charged lipids, thus leading to the cell membrane fusion. How-ever, the elaborate mechanism of cell membrane fusion induced by divalent cations is still needed to be elucidated. Here, surface/interface sensitive sum frequency generation vibrational spectroscopy (SFG-VS) and dynamic light scattering (DLS) were applied in this research to study the responses of phospholipid monolayer to the exposure of divalent metal ions i.e. Ca2+ and Mg2+. According to the particle size distribution results measured by DLS experiments, it was found that Ca2+ could induce inter-vesicular fusion while Mg2+ could not. An octadecyltrichlorosilane self-assembled monolayer (OTS SAM)-lipid monolayer system was designed to model the cell membrane for the SFG-VS experiment. Ca2+ could interact with the lipid PO2− head groups more strongly, resulting in cell membrane fusion more easily, in comparison with Mg2+. No specific interaction between the two metal cations and the C=O groups was observed. However, the C=O orientations changed more after Ca2+-PO2− binding than Mg2+ mediation on lipid monolayer. Meanwhile, Ca2+ could induce dehydration of the lipids (which should be related to the strong Ca2+-PO2− interaction), leading to the reduced hindrance for cell membrane fusion.

Antimicrobial activity of 405 nm light-emitting diode (LED) in the presence of riboflavin against Listeria monocytogenes on the surface of smoked salmon

This study investigated the antimicrobial activity of 405 nm light-emitting diode (LED) with and without riboflavin against Listeria monocytogenes in phosphate buffered saline (PBS) and on smoked salmon at different storage temperatures and evaluated its impact on food quality. The results show that riboflavin-mediated LED illumination in PBS 25 °C significantly inactivated L. monocytogenes cells by 6.2 log CFU/mL at 19.2 J/cm², while illumination alone reduced 1.9 log CFU/mL of L. monocytogenes populations at 57.6 J/cm². L. monocytogenes populations on illuminated smoked salmon decreased by 1.0-2.2 log CFU/cm² at 1.27-2.76 kJ/cm² at 4, 12, and 25 °C, regardless of the presence of riboflavin. Although illumination with and without riboflavin caused the lipid peroxidation and color change in smoked salmon, this study demonstrates the potential of a 405 nm LED to preserve the smoked salmon products, reducing the risk of listeriosis.

In Situ Spectroscopic Probing of Polarity and Molecular Configuration at Aerosol Particle Surfaces

The growth of aerosol particles in the atmosphere is related to chemical reactions in the gas and particle phases and at aerosol particle surfaces. While research regarding the gas and particle phases of aerosols is well-documented, physical properties and chemical reactivities at aerosol particle surfaces have not been studied extensively but have long been recognized. In particular, in situ measurements of aerosol particle surfaces are just emerging. The main reason is a lack of suitable surface-specific analytical techniques for direct measurements of aerosol particles under ambient conditions. Here we develop in situ surface-specific electronic sum frequency scattering (ESFS) to directly identify spectroscopic behaviors of molecules at aerosol particle surfaces. As an example, we applied an ESFS probe, malachite green (MG). We examined electronic spectra of MG at aerosol particle surfaces and found that the polarity of the surfaces is less polar than that in bulk. Our quantitative orientational analysis shows that MG is orientated with a polar angle of 25°-35° at the spherical particle surfaces of aerosols. The adsorption free energy of MG at the aerosol surfaces was found to be -20.75 ± 0.32 kJ/mol, which is much lower than that at the air/water interface. These results provide new insights into aerosol particle surfaces for further understanding the formation of secondary organic aerosols in the atmosphere.

Liquid/Vapor Interface of Dimethyl Carbonate-Methanol Binary Mixtures Investigated by Sum Frequency Generation Vibrational Spectroscopy and Molecular Dynamics Simulation

In the present work, the dimethyl carbonate (DMC)-methanol binary mixture was used as a benchmark system to study the molecular structures of the liquid/vapor interface of organic-organic mixtures by sum frequency generation vibrational spectroscopy (SFG-VS) and molecular dynamics (MD) simulations. It was discovered that both the methanol and DMC molecules are anisotropically oriented at the surface, yielding strong SFG-VS signals in the C-H stretching frequency range for both molecules. The detailed analyses of the spectroscopic and MD data reveal that the increase of the methanol bulk concentrations reduces the orientational order of the methyl groups for both the interfacial DMC and methanol molecules but does not significantly affect the orientations of the carbonyl group in DMC. Moreover, no obvious correlations were found between the room-temperature orientations of the surface molecules and the azeotropic mole fraction. The present work paves the road for future investigations on the molecular structures of the liquid/vapor interfaces of other organic-organic mixtures, especially those that are important in industrial separations.

Interfaces of Gas-Aerosol Particles: Relative Humidity and Salt Concentration Effects

The growth of aerosol particles is intimately related to chemical reactions in the gas phase and particle phase and at gas-aerosol particle interfaces. While chemical reactions in gas and particle phases are well documented, there is very little information regarding interface-related reactions. The interface of gas-aerosol particles not only facilitates a physical channel for organic species to enter and exit but also provides a necessary lane for culturing chemical reactions. The physical and chemical properties of gas-particle interfaces have not been studied extensively, nor have the reactions occurring at the interfaces been well researched. This is mainly due to the fact that there is a lack of suitable in situ interface-sensitive analytical techniques for direct measurements of interfacial properties. The motivation behind this research is to understand how interfaces play a role in the growth of aerosol particles. We have developed in situ interface-specific second harmonic scattering to examine interfacial behaviors of molecules of aerosol particles under different relative humidity (RH) and salt concentrations. Both the relative humidity and salt concentration can change the particle size and the phase of the aerosol. RH not only varies the concentration of solutes inside aerosol particles but also changes interfacial hydration in local regions. Organic molecules were found to exhibit distinct behaviors at the interfaces and bulk on NaCl particles under different RH levels. Our quantitative analyses showed that the interfacial adsorption free energies remain unchanged while interfacial areas increase as the relative humidity increases. Furthermore, the surface tension of NaCl particles decreases as the RH increases. Our experimental findings from the novel nonlinear optical scattering technique stress the importance of interfacial water behaviors on aerosol particles in the atmosphere.

The Influence of Sodium Iodide Salt on the Interfacial Properties of Aqueous Methanol Solution by a Combined Molecular Simulation and Sum Frequency Generation Vibrational Spectroscopy Study

Understanding the influence of salt ions on the microscopic properties of liquid interfaces is of both fundamental and practical importance. A large number of previous experimental and theoretical investigations have explored the salt effects on the surfaces of either pure water or neat organic liquid. However, how the salt ions affect the interfacial structures of water/organic liquid mixtures has rarely been studied. Here, the molecular dynamics (MD) simulations and sum frequency generation vibrational spectroscopy (SFG-VS) were carried out to investigate the influence of sodium iodide (NaI) on the air/liquid interfaces of the methanol-water mixtures. The SFG-VS spectral intensities were discovered to increase with the addition of 3 M NaI, while the center frequencies of the C-H stretching vibrations at high methanol concentrations showed a ∼2 cm^-1 blue shift compared with those obtained before adding NaI. The MD results indicated that Na⁺ and I^- can only affect Part I (near the bulk phase) but not Part II (near the gas phase) of the interfacial region. It was also found that the average orientations of interfacial methyl groups were constant and not effectively disturbed by the changes of methanol concentrations or the addition of NaI. It is therefore concluded that the changes of the SFG-VS intensities upon the addition of NaI salts were mainly caused by the increasing number of interfacial methanol molecules. Further analysis showed that the existence of NaI affects the surface tensions more for the interfaces with higher bulk methanol concentrations, which is in agreement with the SFG-VS results. It is noteworthy that the maximum number density of methanol molecules with the net nonzero orientations is reached near the Gibbs dividing surface, the reasons of which are worth further investigating.