Statistical analysis of multi-dimensional, temporal gene expression of stem cells to elucidate colony size-dependent neural differentiation

Screening for Best Neuronal-Glial Differentiation Protocols of Neuralizing Agents Using a Multi-Sized Microfluidic Embryoid Body Array

Stem cell technology and embryonic stem cell models are of great interest in biomedical research since they provide deeper insights into, e.g., neurogenesis and early mammalian brain development. Despite their great scientific potential, the reliable establishment of three-dimensional embryoid bodies (EBs) remains a major challenge, and the current lack of standardization and comparability is still limiting a broader application and translation of stem cell technology. Among others, a vital aspect for the reliable formation of EBs is optimizing differentiation protocols since organized differentiation is influenced by soluble inducers and EB size. A microfluidic biochip array was employed to automate cell loading and optimize directed neuronal and astrocytic differentiation protocols using murine P19 embryoid bodies to facilitate reliable embryonic stem cell differentiation. Our gravity-driven microfluidic size-controlled embryoid body-on-a-chip system allows (a) the robust operation and cultivation of up to 90 EBs in parallel and (b) the reproducible generation of five increasing sizes ranging from 300 µm to 1000 µm diameters. A comparative study adds two differentiation-inducers such as retinoic acid and EC23 to size-controlled embryoid bodies to identify the optimal differentiation protocol. Our study revealed a 1.4 to 1.9-fold higher neuron and astrocyte expression in larger embryoid bodies (above 750 µm) over smaller-sized EBs (below 450 µm), thus highlighting the importance of EB size in the establishment of robust neurodevelopmental in vitro models.

Precision cell delivery in biphasic polymer systems enhances growth of keratinocytes in culture and promotes their attachment on acellular dermal matrices

Current approaches for precision deposition of cells are not optimized for moist environments or for substrates with complex surface topographic features, for example, the surface of dermal matrices and other biomaterials. To overcome these challenges, an approach is presented that utilizes cell confinement in phase-separating polymer solutions of polyethylene glycol and dextran to precisely deliver keratinocytes in well-defined colonies. Using this approach, keratinocyte colonies are produced with superior viability, proliferative capacity, and barrier formation compared with the same number of cells dispersedly seeded across substrate surfaces. It is further demonstrated that keratinocytes delivered in colonies to the surface of acellular dermal matrices form an intact epidermal basal layer more rapidly and more completely than cells delivered by conventional dispersed seeding. These findings demonstrate that delivery of keratinocytes in phase-separating polymer solutions holds potential for enhancing growth of keratinocytes in culture and production of functional skin equivalents.

Chesapeake Bay Dissolved Oxygen Criterion Attainment Deficit: Three Decades of Temporal and Spatial Patterns

Low dissolved oxygen (DO) conditions are a recurring issue in waters of Chesapeake Bay, with detrimental effects on aquatic living resources. The Chesapeake Bay Program partnership has developed criteria guidance supporting the definition of state water quality standards and associated assessment procedures for DO and other parameters, which provides a binary classification of attainment or impairment. Evaluating time series of these two outcomes alone, however, provides limited information on water quality change over time or space. Here we introduce an extension of the existing Chesapeake Bay water quality criterion assessment framework to quantify the amount of impairment shown by space-time exceedance of DO criterion ("attainment deficit") for a specific tidal management unit (i.e., segment). We demonstrate the usefulness of this extended framework by applying it to Bay segments for each 3-year assessment period between 1985 and 2016. In general, the attainment deficit for the most recent period assessed (i.e., 2014-2016) is considerably worse for deep channel (DC; n = 10) segments than open water (OW; n = 92) and deep water (DW; n = 18) segments. Most subgroups - classified by designated uses, salinity zones, or tidal systems - show better (or similar) attainment status in 2014-2016 than their initial status (1985-1987). Some significant temporal trends (p < 0.1) were detected, presenting evidence on the recovery for portions of Chesapeake Bay with respect to DO criterion attainment. Significant, improving trends were observed in seven OW segments, four DW segments, and one DC segment over the 30 3-year assessment periods (1985-2016). Likewise, significant, improving trends were observed in 15 OW, five DW, and four DC segments over the recent 15 assessment periods (2000-2016). Subgroups showed mixed trends, with the Patuxent, Nanticoke, and Choptank Rivers experiencing significant, improving short-term (2000-2016) trends while Elizabeth experiencing a significant, degrading short-term trend. The general lack of significantly improving trends across the Bay suggests that further actions will be necessary to achieve full attainment of DO criterion. Insights revealed in this work are critical for understanding the dynamics of the Bay ecosystem and for further assessing the effectiveness of management initiatives aimed toward Bay restoration.