Accurate conformational stability and cationic structure of piperidine determined by conformer-specific VUV-MATI spectroscopy

Calculated ionization energies, orbital eigenvalues (HOMO), and related QSAR descriptors of organic molecules: a set of 61 experimental values enables elimination of systematic errors and provides realistic error estimates

Ionization energies (IEs) of organic compounds come in different forms-adiabatic, vertical, as electrode potentials, or as orbital eigenvalues via Koopmans' theorem. They have been linked to the reactivity towards electrophiles and have been used to quantitatively describe electron transfer processes. The de novo prediction of IEs is only meaningful when an estimate of the prediction's uncertainty is included. Pulsed-field ionization (PFI) experiments have quantified adiabatic IEs with unprecedented precision. In this work, a new set of PFI-derived IEs is compiled from the literature as a benchmark for prediction methods. This set includes many common functional groups, a size range from diatomics to two aromatic rings, and IEs between 7 and 14 eV. The first-principles CCSD(T)/CBS protocol presently used reproduces these values within 0.05 eV. For adiabatic IEs and vertical IEs/orbital eigenvalues predicted using approximate density functional theory (DFT), linear regression models are proposed, so that IEs calculated using different methods can be directly compared on a physical scale. This elimination of systematic errors improves the error statistics and allows the performance of predicted IEs to be evaluated if used in quantitative structure-property or -activity relationships, as the latter implicitly correct a descriptor's bias. Owing to the structural scope of the test set, the minimum and maximum deviations from experiment should correspond to those expected for common organic molecules. Deviations from reference values found for orbital eigenvalues but also for IEs calculated explicitly with HF or semi-empirical MO methods were as large as 0.5 eV to 2.0 eV. Such large errors could also propagate into quantitative structure-property models, as shown in illustrative examples of oxidation rate constants in solution.

Deciphering the conformational preference and ionization dynamics of tetrahydrofuran: Insights from advanced spectroscopic techniques

Tetrahydrofuran (THF) has garnered significant attention due to its pivotal role in biological and chemical processes. The diverse array of conformations exhibited by THF profoundly impacts its reactivity and interactions with other molecules. Understanding these conformational preferences is crucial for comprehending its molecular behavior. In this study, we utilize infrared (IR) resonant vacuum ultraviolet photoionization/mass-analyzed threshold ionization (VUV-PI/MATI) mass spectroscopies to capture distinctive vibrational spectra of individual conformers, namely, "twisted" and "bent," within THF. Our conformer-specific vibrational spectra provide valuable insights into the relative populations of these two conformers. The analysis reveals that the twisted (C2) conformer is more stable than the bent (CS) conformer by 17 ± 15 cm-1. By precisely tuning the VUV photon energy to coincide with vibrational excitation via IR absorption, we selectively ionize specific conformers, yielding two-photon IR + VUV-PI/MATI spectra corresponding to the twisted and bent conformers. This investigation conclusively affirms that both the twisted and bent conformers coexist in the neutral state, while only the twisted conformer exists in the cationic state. These findings not only bridge gaps in existing knowledge but also provide profound insights into the behavior of this pivotal molecule in the realms of biology and medicine.

Unraveling the Conformational Preference of Morpholine: Insights from Infrared Resonant Vacuum Ultraviolet Photoionization Mass Spectroscopy

The preference for different conformations in morpholine has a notable effect on its behavior and reactivity in organic synthesis. Herein, we explored the intricate conformational properties of morpholines through a combination of advanced mass spectrometric techniques and theoretical calculations. Notably, we employed infrared (IR) resonant vacuum ultraviolet (VUV) mass-analyzed threshold ionization spectroscopy to measure the unique vibrational spectra of the distinct conformers (Chair-Eq and Chair-Ax) in morpholine for the first time. Through precise VUV photon energy adjustments to coincide with the vibrational excitation via IR absorption, we effectively pinpointed the adiabatic ionization thresholds corresponding to the Chair-Eq (65 442 ± 4 cm-1) and Chair-Ax (65 333 ± 4 cm-1) conformers. This allowed us to accurately determine the conformational stability between the two conformers (109 ± 4 cm-1). By shedding light on the conformational properties of morpholine, this study brings far-reaching implications to the fields of organic synthesis and pharmaceutical research.

Vibronic and Cationic Features of 2-Fluorobenzonitrile and 3-Fluorobenzonitrile Studied by REMPI and MATI Spectroscopy and Franck-Condon Simulations

Fluorinated organic compounds have superior physicochemical properties than general organic compounds due to the strong C-F single bond; they are widely used in medicine, biology, pesticides, and materials science. In order to gain a deeper understanding of the physicochemical properties of fluorinated organic compounds, fluorinated aromatic compounds have been investigated by various spectroscopic techniques. 2-fluorobenzonitrile and 3-fluorobenzonitrile are important fine chemical intermediates and their excited state S₁ and cationic ground state D₀ vibrational features remain unknown. In this paper, we used two-color resonance two photon ionization (2-color REMPI) and mass analyzed threshold ionization (MATI) spectroscopy to study S₁ and D₀ state vibrational features of 2-fluorobenzonitrile and 3-fluorobenzonitrile. The precise excitation energy (band origin) and adiabatic ionization energy were determined to be 36,028 ± 2 cm^-1 and 78,650 ± 5 cm^-1 for 2-fluorobenzonitrile and 35,989 ± 2 cm^-1 and 78,873 ± 5 cm^-1 for 3-fluorobenzonitrile, respectively. The density functional theory (DFT) at the levels of RB3LYP/aug-cc-pvtz, TD-B3LYP/aug-cc-pvtz, and UB3LYP/aug-cc-pvtz were used to calculate the stable structures and vibrational frequencies for the ground state S₀, excited state S₁, and cationic ground state D₀, respectively. Franck-Condon spectral simulations for transitions of S₁ ← S₀ and D₀ ← S₁ were performed based on the above DFT calculations. The theoretical and experimental results were in good agreement. The observed vibrational features in S₁ and D₀ states were assigned according to the simulated spectra and the comparison with structurally similar molecules. Several experimental findings and molecular features were discussed in detail.

Conformational Structures of Neutral and Cationic Pivaldehyde Revealed by IR-Resonant VUV-MATI Mass Spectroscopy

Pivaldehyde, which is an unwanted by-product released with engine exhaust, has received considerable research attention because of its hydrocarbon oxidations at atmospheric temperature. To gain insight into the conformer-specific reaction dynamics, we investigated the conformational structures of the pivaldehyde molecule in neutral (S₀) and cationic (D₀) states using the recently invented IR-resonant VUV-MATI mass spectroscopy. Additionally, we constructed the two-dimensional potential energy surfaces (2D PESs) associated with the conformational transformations in the S₀ and D₀ states to deduce the conformations corresponding to the measured vibrational spectra. The 2D PESs indicated the presence of only the eclipsed conformation in the global minima of both states, unlike those in propanal and isobutanal. However, comparing the IR-dip VUV-MATI spectra from two intense peaks in the VUV-MATI spectrum with the anharmonic IR simulations revealed the correspondence between the gauche conformer on the S₀ state and the measured IR spectra. Furthermore, Franck-Condon analysis confirmed that most peaks in the VUV-MATI spectrum are attributed to the adiabatic ionic transitions between the neutral gauche and cationic eclipsed conformers in pivaldehyde. Consequently, electron removal from the highest occupied molecular orbital, consisting of the nonbonding orbital of the oxygen atom in pivaldehyde, promoted the formyl-relevant modes in the induced cationic eclipsed conformer.

Identification of individual conformers in C4H6O isomers using conformer-specific vibrational spectroscopy

We measured the conformer-specific vibrational spectra of C4H6O isomers in neutral and cationic states using IR resonant vacuum ultraviolet mass-analyzed threshold ionization (VUV-MATI) spectroscopy for the first time. Notably, the measured IR dip and hole-burn VUV-MATI spectra for each isomer represent the identifiable vibrational spectra of individual conformers in both states. Furthermore, we estimated the relative populations of individual conformers in crotonaldehyde (CA) and methyl vinyl ketone (MVK) isomers using the IR dip intensity, the corresponding Franck-Condon factor, and the IR absorption cross section. Our analysis revealed that the compositional ratio of s-trans to s-cis conformers in the CA isomer remained at 95.8 : 4.2 even under supersonic expansion, whereas that in the MVK isomer was determined as 90.6 : 9.4, which is consistent with previous research. These findings reveal that the conformational stability of each isomer depends on the position of the methyl group relative to the carbonyl group.

Development and Verification of Conformer-Specific Vibrational Spectroscopy

Conformers have similar vibrational structures both in neutral (S₀) and cationic (D₀) states owing to the comparable force fields between their nuclei. Nevertheless, there is a continuous development of vibrational spectroscopic techniques to rigorously identify individual conformers in the designated molecule but only in the S₀ state. We developed an inventive conformer-specific vibrational spectroscopic technique to measure identifiable vibrational spectra of individual conformers in both S₀ and D₀ states. We measured isomer-specific vibrational spectra in both states for gas-phase acetone and oxetane isomers from a solution with azeotropic composition to verify the proposed techniques that are based on infrared (IR) resonant vacuum ultraviolet mass-analyzed threshold ionization (VUV-MATI) spectroscopy. The measured IR dip VUV-MATI and IR hole-burn VUV-MATI spectra for each isomer, which correspond to isomer-specific vibrational spectra in both states, can be represented by IR-resonant VUV photoionization and one-photon VUV-MATI spectra of the binary mixture, respectively, under supersonic expansion conditions. The partial pressures of the individual isomers in the binary mixture with different mole fractions estimated according to the relative peak intensities in the measured spectra provide insights on solute-solvent interactions. We suggest that the verified IR-resonant VUV-MATI spectroscopy can form the basis of effective schemes toward conformational chemistry.

Probing the Photoionization Dynamics of 2-Cyclopenten-1-one via High-Resolution VUV-MATI Spectroscopy

2-Cyclopenten-1-one (2CP), which is a cyclic enone, has been considered an important precursor because of its versatile functionality in the synthesis of natural products and materials for biofuels. Here, we report the adiabatic ionization energy (AIE) and cationic structure of 2CP in the ionic transition between the neutral S₀ and the cationic D₀ states probed by high-resolution vacuum ultraviolet mass-analyzed threshold ionization (VUV-MATI) spectroscopy. From the 0-0 band position in the VUV-MATI spectrum supported by the VUV-photoionization efficiency curve, the AIE of 2CP was determined to be 9.3477 ± 0.0004 eV (75,395 ± 3 cm^-1), which is in good agreement with the reference value but much more accurate. The measured MATI spectrum combined with the Franck-Condon fitting at the B3LYP/cc-pVTZ level revealed that the cationic structure of 2CP is twisted with the C₁ symmetry, whereas the neutral 2CP has the C_S symmetry. The results indicate that geometrical changes induced by ionization are mainly attributed to the electron removal from the highest occupied molecular orbital, which consists of nonbonding orbitals on the oxygen atom in the carbonyl group interacting with the σ orbitals in the molecular plane of 2CP. Consequently, lowering the C₁ symmetry for cationic 2CP led to the promotions of the ring-bending and ring-twisting modes in the MATI spectrum, which correspond to the ring puckering and C═C twisting in the S₀ state, respectively.

One-photon VUV-MATI and two-photon IR+VUV-MATI spectroscopic determination of oxetane cation ring-puckering vibrations and conformation

The conformational structures of heterocyclic compounds are of considerable interest to chemists and biochemists as they are often the constituents of natural products. Among saturated four-membered heterocycles, the conformational structure of oxetane is known to be slightly puckered in equilibrium because of a low interconversion barrier in its ring-puckering potential, unlike cyclobutane and thietane. We measured the one-photon vacuum ultraviolet mass-analyzed threshold ionization (VUV-MATI) and two-photon IR+VUV-MATI spectra of oxetane for the first time to determine the ring-puckering potential of the oxetane cation and hence its conformational structure in the D₀ (ground) state. Remarkably, negative anharmonicity and large amplitudes were observed for the ring-puckering vibrational mode progression in the low-frequency region of the observed MATI spectra. We were able to successfully analyze the progression in the MATI spectra through the Franck-Condon simulations, using modeled potential energy functions for the ring-puckering modes in the S₀ and D₀ states. Considering that the interconversion barrier and puckered angle for the ring-puckering potential on the S₀ state were found to be 15.5 cm^-1 and 14°, respectively, the cationic structure is expected to be planar with C_2v symmetry. Our results revealed that the removal of an electron from the nonbonding orbitals on the oxygen atom in oxetane induced the straightening of the puckered ring in the cation owing to an increase in ring strain. Consequently, we conclude that this change in the conformational structure upon ionization generated the ring-puckering vibrational mode progression in the MATI spectra.

Conformational structure of cationic tetrahydropyran by one-photon vacuum ultraviolet mass-analyzed threshold ionization spectroscopy

Isolating and identifying the conformational forms of molecules are imperative processes to investigate the chemical reaction pathways of individual conformers. Herein, we explored the conformational structures of tetrahydropyran in the neutral (S0) and cationic (D0) states by varying the supersonic expansion conditions using one-photon vacuum ultraviolet mass-analyzed threshold ionization (VUV-MATI) spectroscopy. The constructed 2D potential energy surfaces associated with conformational interconversion between the chair and boat forms in the S0 and D0 states revealed that the ionic transitions observed in the MATI spectra correspond to the most stable chair conformer. Accordingly, based on the 0-0 band in the VUV-MATI spectrum supported by the VUV photoionization efficiency curve, the adiabatic ionization energy for the conversion of the chair conformer to a cationic state was determined to be 74 687 ± 4 cm-1 (9.2600 ± 0.0005 eV). Definitive vibrational assignment of the measured MATI spectra using Franck-Condon fitting revealed the cationic structure of the twisted chair conformer. The geometrical change upon ionization promoted the vibrational modes associated with ring inversion and deformation motions in the cationic state. This behavior, which was attributed to the effect of electron removal from the highest occupied molecular orbital (HOMO) consisting of the nonbonding orbital of the oxygen atom, reveals the role of electrons in the HOMO.