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de Barros GM, Gama LF, de Mello FR, Corrêa CN, Fiametti LO, Montenegro H, Ottoni CA, de Castro LM. Molecular Insights into the Marine Gastropod Olivancillaria urceus: Transcriptomic and Proteopeptidomic Approaches Reveal Polypeptides with Putative Therapeutic Potential. Int J Mol Sci 2025; 26:3751. [PMID: 40332358 PMCID: PMC12027567 DOI: 10.3390/ijms26083751] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2025] [Revised: 04/08/2025] [Accepted: 04/13/2025] [Indexed: 05/08/2025] Open
Abstract
The marine environment is a rich source of new biotechnologies and products. Bottom trawling for shrimp species such as Xiphopenaeus kroyeri and Farfantepenaeus brasiliensis leads to the unintentional capture of non-target species, known as bycatch, which includes a variety of marine life that are often discarded without economic value. A common bycatch species on the southeast coast of Brazil is Olivancillaria urceus (O. urceus), a carnivorous gastropod that feeds mainly on bivalves. Despite its abundance, this species is still little studied, especially for biotechnological applications. Other gastropods such as Conus are known for their diverse and potent toxins, which offer great potential for pharmacological discoveries. In this study, an omics approach, including transcriptomics and proteopeptidomics, was applied to explore O. urceus at the molecular level. The transcriptome of the muscle foot/mantle led to the annotation of 19,097 genes via Gene Ontology, identifying 20 toxin-like transcripts identified considering the Gastropod class. The proteome fraction confirmed 2179 transcripts, including sequences with toxin activity, such as conotoxin precursors, Conodipine-P3, and BPTI/Kunitz domain-containing proteins. In addition, 9663 peptides of 1484 precursor proteins were detected in the peptide fraction, including 2 sequences representing neurotoxins. The identification of these sequences could lead to the discovery of new molecules with therapeutic potential.
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Affiliation(s)
- Gabriel Marques de Barros
- Department of Biological and Environmental Sciences, Bioscience Institute, São Paulo State University (UNESP), Sao Vicente 11330-900, SP, Brazil; (G.M.d.B.); (L.F.G.); (F.R.d.M.); (C.N.C.); (C.A.O.)
- Biodiversity of Coastal Environments Postgraduate Program, Department of Biological and Environmental Sciences, Bioscience Institute, São Paulo State University (UNESP), Sao Vicente 11330-900, SP, Brazil
| | - Letícia Fontes Gama
- Department of Biological and Environmental Sciences, Bioscience Institute, São Paulo State University (UNESP), Sao Vicente 11330-900, SP, Brazil; (G.M.d.B.); (L.F.G.); (F.R.d.M.); (C.N.C.); (C.A.O.)
- Biodiversity of Coastal Environments Postgraduate Program, Department of Biological and Environmental Sciences, Bioscience Institute, São Paulo State University (UNESP), Sao Vicente 11330-900, SP, Brazil
| | - Felipe Ricardo de Mello
- Department of Biological and Environmental Sciences, Bioscience Institute, São Paulo State University (UNESP), Sao Vicente 11330-900, SP, Brazil; (G.M.d.B.); (L.F.G.); (F.R.d.M.); (C.N.C.); (C.A.O.)
| | - Claudia Neves Corrêa
- Department of Biological and Environmental Sciences, Bioscience Institute, São Paulo State University (UNESP), Sao Vicente 11330-900, SP, Brazil; (G.M.d.B.); (L.F.G.); (F.R.d.M.); (C.N.C.); (C.A.O.)
| | - Louise Oliveira Fiametti
- Institute of Chemistry, São Paulo State University (UNESP), Araraquara 14800-060, SP, Brazil;
- School of Pharmaceutical Sciences, São Paulo State University (UNESP), Araraquara 14800-903, SP, Brazil
| | | | - Cristiane Angélica Ottoni
- Department of Biological and Environmental Sciences, Bioscience Institute, São Paulo State University (UNESP), Sao Vicente 11330-900, SP, Brazil; (G.M.d.B.); (L.F.G.); (F.R.d.M.); (C.N.C.); (C.A.O.)
- Biodiversity of Coastal Environments Postgraduate Program, Department of Biological and Environmental Sciences, Bioscience Institute, São Paulo State University (UNESP), Sao Vicente 11330-900, SP, Brazil
| | - Leandro Mantovani de Castro
- Department of Biological and Environmental Sciences, Bioscience Institute, São Paulo State University (UNESP), Sao Vicente 11330-900, SP, Brazil; (G.M.d.B.); (L.F.G.); (F.R.d.M.); (C.N.C.); (C.A.O.)
- Biodiversity of Coastal Environments Postgraduate Program, Department of Biological and Environmental Sciences, Bioscience Institute, São Paulo State University (UNESP), Sao Vicente 11330-900, SP, Brazil
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Sun X, Chen X, Wu B, Zhou L, Chen Y, Zheng S, Wang S, Liu Z. Clam Genome and Transcriptomes Provide Insights into Molecular Basis of Morphological Novelties and Adaptations in Mollusks. BIOLOGY 2024; 13:870. [PMID: 39596825 PMCID: PMC11592408 DOI: 10.3390/biology13110870] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/25/2024] [Revised: 10/17/2024] [Accepted: 10/23/2024] [Indexed: 11/29/2024]
Abstract
Bivalve mollusks, comprising animals enclosed in two shell valves, are well-adapted to benthic life in many intertidal zones. Clams have evolved the buried lifestyle, which depends on their unique soft tissue structure and their wedge-shaped muscular foot and long extendible siphons. However, molecular mechanisms of adaptative phenotype evolution remain largely unknown. In the present study, we obtain the high-quality chromosome-level genome of Manila clam R. philippinarum, an economically important marine bivalve in many coastal areas. The genome is constructed by the Hi-C assisted assembly, which yields 19 chromosomes with a total of 1.17 Gb and BUSCO integrity of 92.23%. The de novo assembled genome has a contig N50 length of 307.7 kb and scaffold N50 of 59.5 Mb. Gene family expansion analysis reveals that a total of 24 single-copy gene families have undergone the significant expansion or contraction, including E3 ubiquitin ligase and dynein heavy chain. The significant expansion of transposable elements has been also identified, including long terminal repeats (LTR) and non-LTR retrotransposons. The comparative transcriptomics among different clam tissues reveals that extracellular matrix (ECM) receptors and neuroactive ligand receptors may play the important roles in tissue structural support and neurotransmission during their infaunal life. These findings of gene family expansion and tissue-specific expression may reflect the unique soft tissue structure of clams, suggesting the evolution of lineage-specific morphological novelties. The high-quality genome and transcriptome data of R. philippinarum will not only facilitate the genetic studies on clams but will also provide valuable information on morphological novelties in mollusks.
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Affiliation(s)
- Xiujun Sun
- State Key Laboratory of Mariculture Biobreeding and Sustainable Goods, Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao 266071, China; (X.S.); (X.C.); (B.W.); (L.Z.); (S.Z.); (S.W.)
- Laboratory for Marine Fisheries Science and Food Production Processes, Laoshan Laboratory, Qingdao 266071, China
| | - Xi Chen
- State Key Laboratory of Mariculture Biobreeding and Sustainable Goods, Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao 266071, China; (X.S.); (X.C.); (B.W.); (L.Z.); (S.Z.); (S.W.)
- Laboratory for Marine Fisheries Science and Food Production Processes, Laoshan Laboratory, Qingdao 266071, China
| | - Biao Wu
- State Key Laboratory of Mariculture Biobreeding and Sustainable Goods, Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao 266071, China; (X.S.); (X.C.); (B.W.); (L.Z.); (S.Z.); (S.W.)
- Laboratory for Marine Fisheries Science and Food Production Processes, Laoshan Laboratory, Qingdao 266071, China
| | - Liqing Zhou
- State Key Laboratory of Mariculture Biobreeding and Sustainable Goods, Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao 266071, China; (X.S.); (X.C.); (B.W.); (L.Z.); (S.Z.); (S.W.)
- Laboratory for Marine Fisheries Science and Food Production Processes, Laoshan Laboratory, Qingdao 266071, China
| | - Yancui Chen
- Zhangzhou Aquatic Technology Promotion Station, Zhangzhou 363000, China;
| | - Sichen Zheng
- State Key Laboratory of Mariculture Biobreeding and Sustainable Goods, Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao 266071, China; (X.S.); (X.C.); (B.W.); (L.Z.); (S.Z.); (S.W.)
- Laboratory for Marine Fisheries Science and Food Production Processes, Laoshan Laboratory, Qingdao 266071, China
- College of Fisheries and Life Science, Shanghai Ocean University, Shanghai 201306, China
| | - Songlin Wang
- State Key Laboratory of Mariculture Biobreeding and Sustainable Goods, Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao 266071, China; (X.S.); (X.C.); (B.W.); (L.Z.); (S.Z.); (S.W.)
- Laboratory for Marine Fisheries Science and Food Production Processes, Laoshan Laboratory, Qingdao 266071, China
- College of Marine Science and Fisheries, Jiangsu Ocean University, Lianyungang 222005, China
| | - Zhihong Liu
- State Key Laboratory of Mariculture Biobreeding and Sustainable Goods, Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao 266071, China; (X.S.); (X.C.); (B.W.); (L.Z.); (S.Z.); (S.W.)
- Laboratory for Marine Fisheries Science and Food Production Processes, Laoshan Laboratory, Qingdao 266071, China
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Lozano-Flores C, Trujillo-Barrientos J, Brito-Domínguez DA, Téllez-Chávez E, Cortés-Encarnación R, Medina-Durazno LD, Cornelio-Martínez S, de León-Cuevas A, Ávalos-Fernández A, Gutiérrez-Sarmiento W, Torres-Barrera A, Soto-Barragán FJ, Herrera-Oropeza G, Martínez-Olvera R, Martínez-Acevedo D, Cruz-Blake LC, Rangel-García V, Martínez-Cabrera G, Larriva-Sahd J, Pimentel-Domínguez R, Ávila R, Varela-Echavarría A. SlugAtlas, a histological and 3D online resource of the land slugs Deroceras laeve and Ambigolimax valentianus. PLoS One 2024; 19:e0312407. [PMID: 39436899 PMCID: PMC11495586 DOI: 10.1371/journal.pone.0312407] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2024] [Accepted: 10/04/2024] [Indexed: 10/25/2024] Open
Abstract
Due to their distinctive anatomical characteristics, land slugs are appealing research subjects from a variety of angles, including stem cell biology, regeneration, embryonic development, allometry, and neurophysiology. Here we present SlugAtlas, an anatomical and histological online resource of the land slugs Deroceras laeve and Ambigolimax valentianus. The atlas is composed of series of histological sections on the horizontal, sagittal, and transversal planes for both species with 3D viewing tools of their major organs. The atlas was used in this work for a comparative analysis of the major organs and tissues of these two species. We provide a comprehensive histological description of them and an explanation of novel findings of unique features of their anatomy. For D. laeve, we additionally studied its ability for degrowth and regrowth, a feature that characterizes animals with high regeneration potential and obtained initial results on the study of the regeneration of its tail. SlugAtlas is a resource that is also built to accommodate future growth and, along with the experimental techniques that we have developed, will provide the foundation for research projects in a variety of biological domains.
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Affiliation(s)
- Carlos Lozano-Flores
- Department of Developmental Neurobiology and Neurophysiology, Instituto de Neurobiología, Universidad Nacional Autónoma de México (UNAM), Querétaro, México
| | - Jessica Trujillo-Barrientos
- Department of Developmental Neurobiology and Neurophysiology, Instituto de Neurobiología, Universidad Nacional Autónoma de México (UNAM), Querétaro, México
| | - Diego A. Brito-Domínguez
- Department of Developmental Neurobiology and Neurophysiology, Instituto de Neurobiología, Universidad Nacional Autónoma de México (UNAM), Querétaro, México
| | - Elisa Téllez-Chávez
- Department of Developmental Neurobiology and Neurophysiology, Instituto de Neurobiología, Universidad Nacional Autónoma de México (UNAM), Querétaro, México
| | - Rocío Cortés-Encarnación
- Department of Developmental Neurobiology and Neurophysiology, Instituto de Neurobiología, Universidad Nacional Autónoma de México (UNAM), Querétaro, México
| | - Lizbeth D. Medina-Durazno
- Department of Developmental Neurobiology and Neurophysiology, Instituto de Neurobiología, Universidad Nacional Autónoma de México (UNAM), Querétaro, México
| | - Sergio Cornelio-Martínez
- Department of Developmental Neurobiology and Neurophysiology, Instituto de Neurobiología, Universidad Nacional Autónoma de México (UNAM), Querétaro, México
| | | | | | - Wilbert Gutiérrez-Sarmiento
- Department of Developmental Neurobiology and Neurophysiology, Instituto de Neurobiología, Universidad Nacional Autónoma de México (UNAM), Querétaro, México
| | - Aldo Torres-Barrera
- Department of Developmental Neurobiology and Neurophysiology, Instituto de Neurobiología, Universidad Nacional Autónoma de México (UNAM), Querétaro, México
| | - Fernando Javier Soto-Barragán
- Department of Developmental Neurobiology and Neurophysiology, Instituto de Neurobiología, Universidad Nacional Autónoma de México (UNAM), Querétaro, México
| | - Gabriel Herrera-Oropeza
- Department of Developmental Neurobiology and Neurophysiology, Instituto de Neurobiología, Universidad Nacional Autónoma de México (UNAM), Querétaro, México
| | - Ramón Martínez-Olvera
- Department of Developmental Neurobiology and Neurophysiology, Instituto de Neurobiología, Universidad Nacional Autónoma de México (UNAM), Querétaro, México
| | - David Martínez-Acevedo
- Department of Developmental Neurobiology and Neurophysiology, Instituto de Neurobiología, Universidad Nacional Autónoma de México (UNAM), Querétaro, México
| | - Luis C. Cruz-Blake
- Department of Developmental Neurobiology and Neurophysiology, Instituto de Neurobiología, Universidad Nacional Autónoma de México (UNAM), Querétaro, México
| | - Vanessa Rangel-García
- Department of Developmental Neurobiology and Neurophysiology, Instituto de Neurobiología, Universidad Nacional Autónoma de México (UNAM), Querétaro, México
| | - Gema Martínez-Cabrera
- Department of Developmental Neurobiology and Neurophysiology, Instituto de Neurobiología, Universidad Nacional Autónoma de México (UNAM), Querétaro, México
| | - Jorge Larriva-Sahd
- Department of Developmental Neurobiology and Neurophysiology, Instituto de Neurobiología, Universidad Nacional Autónoma de México (UNAM), Querétaro, México
| | | | - Remy Ávila
- Centro de Física Aplicada y Tecnología Avanzada (UNAM), Querétaro, México
| | - Alfredo Varela-Echavarría
- Department of Developmental Neurobiology and Neurophysiology, Instituto de Neurobiología, Universidad Nacional Autónoma de México (UNAM), Querétaro, México
- Laboratorio Nacional de Visualización Científica Avanzada (LAVIS), Querétaro, México
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Effect of Bathing in a 0.1% Aqueous Solution of Ethacridine Lactate on Selected Physiological Parameters of Cornu Aspersum Müller Edible Snails. J Vet Res 2020; 64:313-318. [PMID: 32587920 PMCID: PMC7305644 DOI: 10.2478/jvetres-2020-0038] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2019] [Accepted: 05/14/2020] [Indexed: 11/20/2022] Open
Abstract
Introduction The prohibition of antibiotic use in edible snails obligates breeders to treat bacterial infections by different means, of which a common one is a bath in Gram-positive– and partially Gram-negative–bactericidal ethacridine lactate solution. The aim of the study was to determine the effect of bathing Cornu aspersum Müller snails in a 0.1% aqueous solution of ethacridine lactate on selected physiological parameters of haemolymph. Material and Methods The study included 80 snails, divided into two equal groups (study and control). The study group was subjected to bathing in ethacridine lactate and the control group to bathing in tap water. Both groups were treated daily for seven days. The number of haemocytes in the haemolymph, the activity of alanine (ALT) and aspartate (AST) aminotransferases, and the concentration of urea were determined. Results In the study group, after exposure to ethacridine lactate solution an increase in ALT activity, changes in the De Ritis ratio, an increase in the amount of haemocytes, and a decrease in body weight were found. No such changes were detected in the control group snails or in animals after the first bath. Conclusion Multiple applications of a 0.1% ethacridine lactate bath may adversely affect Cornu aspersum Müller snails.
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Bravo Portela I, Martinez-Zorzano VS, Molist-Perez I, Molist García P. Ultrastructure and glycoconjugate pattern of the foot epithelium of the abalone Haliotis tuberculata (Linnaeus, 1758) (Gastropoda, Haliotidae). ScientificWorldJournal 2012; 2012:960159. [PMID: 22645482 PMCID: PMC3356765 DOI: 10.1100/2012/960159] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2011] [Accepted: 12/21/2011] [Indexed: 11/19/2022] Open
Abstract
The foot epithelium of the gastropod Haliotis tuberculata is studied by light and electron microscopy in order to contribute to the understanding of the anatomy and functional morphology of the mollusks integument. Study of the external surface by scanning electron microscopy reveals that the side foot epithelium is characterized by a microvillus border with a very scant presence of small ciliary tufts, but the sole foot epithelium bears a dense field of long cilia. Ultrastructural examination by transmission electron microscopy of the side epithelial cells shows deeply pigmented cells with high electron-dense granular content which are not observed in the epithelial sole cells. Along the pedal epithelium, seven types of secretory cells are present; furthermore, two types of subepithelial glands are located just in the sole foot. The presence and composition of glycoconjugates in the secretory cells and subepithelial glands are analyzed by conventional and lectin histochemistry. Subepithelial glands contain mainly N-glycoproteins rich in fucose and mannose whereas secretory cells present mostly acidic sulphated glycoconjugates such as glycosaminoglycans and mucins, which are rich in galactose, N-acetyl-galactosamine, and N-acetyl-glucosamine. No sialic acid is present in the foot epithelium.
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Affiliation(s)
- I Bravo Portela
- Instituto Español de Oceanografía, Centro Oceanográfico de Vigo, Apdo 1552, 36200 Vigo, Spain
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Bairati A, Gioria M. An ultrastructural study of cell junctions and the cytoskeleton in epithelial cells of the molluscan integument. J Morphol 2008; 269:319-31. [DOI: 10.1002/jmor.10590] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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Bairati A, Comazzi M, Gioria M. An ultrastructural study of connective tissue in mollusc integument III. Cephalopoda. Tissue Cell 2003; 35:155-68. [PMID: 12798125 DOI: 10.1016/s0040-8166(03)00017-x] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
Abstract
We studied structure and ultrastructure of the subepidermal connective tissue (SEC) of the integument of three cephalopods (Sepia officinalis, Octopus vulgaris and Loligo pealii). In all species, three distinct regions of the SEC were recognised: (a) an outer zone (OZ) that included the dermal-epidermal junction, and consisted of a thin layer of connective tissue containing muscles, (b) an extensive middle zone (MZ) containing a compact network of collagen fibres and numerous cells, (c) an inner zone (IZ) of loose connective tissue that merged with muscular fascia. This arrangement differs from that in bivalves and gastropods and recalls vertebrate integument. The dermal-epidermal junction of cephalopods differed from that of bivalves, gastropods and mammals in that the epidermal cells did not possess hemidesmosomes, and their intermediate filaments terminated directly in the plasmamembrane. The thick (120-500 nm) basal membrane (BM) had a superficial zone containing a regular array of granules; a lamina densa composed of a compact network of small filaments and granules; and an IZ distinguished by expansions of granular material protruding into underlying structures. Collagen fibres contained fibroblast-derived cytoplasmic thread, running through their centres and were surrounded by granular material that joins them to adjacent fibres. The collagen fibrils were of medium diameter (30-80 nm) had the typical ultrastructure of fibrillar collagens, and were surrounded by abundant interfibrillar material. The hypodermis was loose, with a network of small bundles of collagen fibrils. Cephalopod integument appears to represent a major evolutionary step distinguishing this class of molluscs.
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Affiliation(s)
- A Bairati
- Dipartimento di Fisiologia e Biochimica generali, Sezione di Istologia e Anatomia Umana, Università degli Studi di Milano, Via Celoria 26, 20133 Milan, Italy.
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