Cancer genomes--continuing progress

Expression and promoter methylation of AREG in colorectal neoplasms

AIM: To investigate the expression and promoter methylation of amphiregulin (AREG) in colorectal neoplasms.

METHODS: The expression of AREG mRNA was detected by real-time quantitative reverse transcription-polymerase chain reaction (qRT-PCR) in 145 cases of colorectal neoplasms and matched normal colorectal tissues. The promoter methylation status of AREG in the above specimens was detected using methylation-specific polymerase chain reaction (MSP).

RESULTS: Overexpression of AREG was found in colorectal neoplasms compared with normal colorectal tissues. The rate of AREG gene promoter methylation was significantly lower in colorectal neoplasms than in normal colorectal tissues (11.5% vs 67.7%, P < 0.05).

CONCLUSION: Higher expression of AREG has a significant correlation with patient age and tumor differentiation degree. Promoter demethylation may play an important role in AREG overexpression in colorectal neoplasms.

Inactivating mutations of acetyltransferase genes in B-cell lymphoma

B-cell non-Hodgkin's lymphoma comprises biologically and clinically distinct diseases the pathogenesis of which is associated with genetic lesions affecting oncogenes and tumour-suppressor genes. We report here that the two most common types--follicular lymphoma and diffuse large B-cell lymphoma--harbour frequent structural alterations inactivating CREBBP and, more rarely, EP300, two highly related histone and non-histone acetyltransferases (HATs) that act as transcriptional co-activators in multiple signalling pathways. Overall, about 39% of diffuse large B-cell lymphoma and 41% of follicular lymphoma cases display genomic deletions and/or somatic mutations that remove or inactivate the HAT coding domain of these two genes. These lesions usually affect one allele, suggesting that reduction in HAT dosage is important for lymphomagenesis. We demonstrate specific defects in acetylation-mediated inactivation of the BCL6 oncoprotein and activation of the p53 tumour suppressor. These results identify CREBBP/EP300 mutations as a major pathogenetic mechanism shared by common forms of B-cell non-Hodgkin's lymphoma, with direct implications for the use of drugs targeting acetylation/deacetylation mechanisms.

[Mechanisms of leucemogenesis]

The genetic origins of the development of malignant haematological disorders have been established at the beginning of the 80ies. Systematic characterization of chromosomal structural abnormalities and, more recently by DNA microarray approaches and sequencing of tumour genomes have allowed the identification of a large number of genes that are mutated during malignant transformation in humans. Functional studies of these human oncogenes have shown that most of them were not able to transform a haematologic progenitor when acting alone and that cooperation with other oncogenic events was required. The present challenges are the evaluation of the role of each mutation in malignant transformation and the definition of the chronology of their emergence. From these data, the development of efficient therapeutic approaches will be possible by targeting the early oncogenic events which are at the origin of the malignant transformation.

[The role of chemotherapy in pediatric medulloblastoma]

Medulloblastoma is one of the most frequent brain tumors in childhood. The mortality of medulloblastoma decreased significantly during the last few decades, which was the result of the better surgical and radiotherapeutic methods and of the development of chemotherapy. The aim of this publication is the critical review of the present chemotherapeutic treatment. The new therapeutic trials based on the molecular genetic mechanism of these tumors are also mentioned.

Sequencing genomes: from individuals to populations

The whole genome sequences of Jim Watson and Craig Venter are early examples of personalized genomics, which promises to change how we approach healthcare in the future. Before personal sequencing can have practical medical benefits, however, and before it should be advocated for implementation at the population-scale, there needs to be a better understanding of which genetic variants influence which traits and how their effects are modified by epigenetic factors. Nonetheless, for forging links between DNA sequence and phenotype, efforts to sequence the genomes of individuals need to continue; this includes sequencing sub-populations for association studies which analyse the difference in sequence between disease affected and unaffected individuals. Such studies can only be applied on a large enough scale to be effective if the massive strides in sequencing technology that have recently occurred also continue.