1
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Co-solvent and temperature effect on conformation and hydration of polypropylene and polyethylene oxides in aqueous solutions. J Mol Liq 2022. [DOI: 10.1016/j.molliq.2022.119774] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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2
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Yang J, Wang Y, Qian HJ, Lu ZY, Gong Z, Liu H, Cui S. Force-induced hydrogen bonding between single polyformaldehyde chain and water. POLYMER 2022. [DOI: 10.1016/j.polymer.2022.125007] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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3
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Bakulin I, Kondratyuk N, Lankin A, Norman G. Properties of aqueous 1,4-dioxane solution via molecular dynamics. J Chem Phys 2021; 155:154501. [PMID: 34686058 DOI: 10.1063/5.0059337] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Polyethers are promising compounds for the creation of electrochemical energy storage systems. The molecular dynamics method can facilitate the search of compounds that have the most potential. However, the application of this method requires verification of the force fields. We perform molecular dynamics calculations of the physical properties of the aqueous 1,4-dioxane solution (density, enthalpy of mixing, and viscosity) and compare them to the available experimental data. In addition, we confirm the idea that the solution structure depends on the dioxane molar fraction, proposed in the experiment of Takamuku et al. [J. Mol. Liq. 83(1-3), 163-177 (1999)]. The hydrogen bonds between dioxane and water are analyzed. The correlation between the excess viscosity and enthalpy of mixing is demonstrated.
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Affiliation(s)
- I Bakulin
- Moscow Institute of Physics and Technology (National Research University), 141700 Dolgoprudnyi, Russia
| | - N Kondratyuk
- Moscow Institute of Physics and Technology (National Research University), 141700 Dolgoprudnyi, Russia
| | - A Lankin
- Moscow Institute of Physics and Technology (National Research University), 141700 Dolgoprudnyi, Russia
| | - G Norman
- Moscow Institute of Physics and Technology (National Research University), 141700 Dolgoprudnyi, Russia
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4
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Dahanayake R, Dormidontova EE. Hydrogen Bonding Sequence Directed Coil-Globule Transition in Water Soluble Thermoresponsive Polymers. PHYSICAL REVIEW LETTERS 2021; 127:167801. [PMID: 34723603 DOI: 10.1103/physrevlett.127.167801] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/07/2021] [Accepted: 09/15/2021] [Indexed: 06/13/2023]
Abstract
The origin of the coil-globule transition for water-soluble thermoresponsive polymers frequently used in nanomaterials remains elusive. Using polypropylene oxide as an example we demonstrate by means of atomistic molecular dynamics simulations that temperature-induced increase in the sequence length of monomers that are not hydrogen bonded to water drives the coil-globule transition. Longer chains statistically exhibit longer sequences which serve as nucleation sites for hydrophobic cluster formation, facilitating chain collapse at lower temperature in agreement with experimental data.
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Affiliation(s)
- Rasika Dahanayake
- Polymer Program, Institute of Materials Science and Physics Department, University of Connecticut, Storrs, Connecticut 06269, USA
| | - Elena E Dormidontova
- Polymer Program, Institute of Materials Science and Physics Department, University of Connecticut, Storrs, Connecticut 06269, USA
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5
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Saha LC, Kikugawa G. Heat Conduction Performance over a Poly(ethylene glycol) Self-Assembled Monolayer/Water Interface: A Molecular Dynamics Study. J Phys Chem B 2021; 125:1896-1905. [PMID: 33569956 DOI: 10.1021/acs.jpcb.0c09385] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
This study examined the interfacial heat condition between a poly(ethylene glycol) (PEG) self-assembled monolayer (SAM) and water using molecular dynamics simulation. It was found that the PEG SAM has higher thermal boundary conductance (TBC) than the traditionally used alkane-based SAM. The TBC conditionally varied with the length of the PEG molecules, where interfacial thermal resistance was a key factor. Our results reveal that the TBC of the PEG SAM/water interface is greatly influenced by its structural properties rather than the matching of vibrational properties between the SAM terminal and water. The structural analysis shows that the water structure around the terminal oxygen atom of the SAM plays a vital role in controlling the TBC. In this study, the concept of free volume has also been exploited, and the result suggests that the reduction of the free volume fraction accommodates a higher TBC. The model was precisely validated against experimental data by calculating the tilt angle and dihedral angle of the PEG SAM, the persistence length of the PEG chain in the water medium, and the sulfur position of the PEG SAM headgroup on the gold surface using quantitative scanning transmission electron microscopy image simulation.
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Affiliation(s)
- Leton C Saha
- Institute of Fluid Science, Tohoku University, 2-1-1 Katahira, Aoba-ku, Sendai 980-8577, Japan
| | - Gota Kikugawa
- Institute of Fluid Science, Tohoku University, 2-1-1 Katahira, Aoba-ku, Sendai 980-8577, Japan
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6
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Utiramerur S, Paulaitis M. Analysis of Cooperativity and Group Additivity in the Hydration of 1,2-Dimethoxyethane. J Phys Chem B 2021; 125:1660-1666. [DOI: 10.1021/acs.jpcb.0c10729] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Sowmi Utiramerur
- William G. Lowrie Department of Chemical and Biomolecular Engineering, Ohio State University, Columbus, Ohio 43210, United States
| | - Michael Paulaitis
- William G. Lowrie Department of Chemical and Biomolecular Engineering, Ohio State University, Columbus, Ohio 43210, United States
- The Center for Nanomedicine at the Wilmer Eye Institute, Johns Hopkins University School of Medicine, Baltimore, Maryland 21231, United States
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7
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Khoiroh I, Lee SY, Pirdashti M, Lee MJ. Insight into structural properties of polyethylene glycol monolaurate in water and alcohols from molecular dynamics studies. RSC Adv 2020; 10:21760-21771. [PMID: 35516635 PMCID: PMC9054503 DOI: 10.1039/c9ra09688d] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2019] [Accepted: 05/29/2020] [Indexed: 11/21/2022] Open
Abstract
By means of molecular dynamics (MD) simulations, we explored the structural properties of polyethylene glycol monolaurate (PEGML) in water and in various aliphatic alcohols (methanol, ethanol, 2-propanol, 2-butanol, tert-butanol, and 1-pentanol). The PEGML and the alcohols were simulated using the optimized potentials for liquid simulations, all-atom (OPLS-AA) force field and water using the extended simple point charge (SPC/E) model. From the isothermal-isobaric (NPT, constant number of particles, constant pressure, and constant temperature) ensemble, we extracted the densities from the simulations and compared them with those from experimental results in order to confirm the validity of the selected force fields. The densities from MD simulations are in good agreement with the experimental values. To gain more insight into the nature of interactions between the PEGML and the solvent molecules, we analyzed the hydrogen-bonds, the electrostatic (Coulomb) interactions, and the van der Waals (Lennard-Jones) interaction energies extracted from MD simulations. The results were further strengthened by computing the solvation free energy by employing the free energy perturbation (FEP) approach. In this method, the free energy difference was computed by using the Bennet Acceptance Ratio (BAR) method. Moreover, the radial distribution functions were analyzed in order to gain more understanding of the solution behavior at the molecular level.
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Affiliation(s)
- Ianatul Khoiroh
- Department of Chemical & Environmental Engineering, Faculty of Science and Engineering, University of Nottingham Malaysia Jalan Broga 43500 Semenyih Selangor Darul Ehsan Malaysia +60-3-8924-8017 +60-3-8924-8361
| | - Sze Ying Lee
- Department of Chemical Engineering, Faculty of Engineering and Science, Universiti Tunku Abdul Rahman Sungai Long Campus Kajang 43000 Selangor Malaysia
| | - Mohsen Pirdashti
- Chemical Engineering Department, Faculty of Engineering, Shomal University PO Box 731 Amol Iran
| | - Ming-Jer Lee
- Department of Chemical Engineering, National Taiwan University of Science and Technology 43 Keelung Road, Section 4 Taipei 106-07 Taiwan
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8
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Das Mahanta D, Mitra RK. Connection of large amplitude angular jump motions with temporal heterogeneity in aqueous solutions. Phys Chem Chem Phys 2020; 22:9339-9348. [PMID: 32309843 DOI: 10.1039/d0cp00491j] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Abstract
It has now been established that large angular jumps do take place when a rotating water molecule exchanges its hydrogen bond (H-bond) identity. This motion differs from the small angular diffusional steps occurring within short time intervals which define the 'Debye diffusion model' of water dynamics. We intend to investigate whether these two processes do eventually complement each other. In this present investigation the orientational dynamics of water in its mixture with a small hydrophobic molecule 1,2-dimethoxy ethane (DME) is studied microscopically using the all-atom classical molecular dynamics (MD) simulation technique. We found that the reorientational motions of water molecules are governed by continuous making and breaking of intermolecular H-bonds with their partners. We characterise these H-bond reorientation motions with the description of the "large amplitude angular jump model" and explore the coupling between the rotational and translational motions. By following the trajectories of each molecule in the solutions we describe the orientational dynamics of liquid water with a 'continuous time random walk' (CTRW) approach. Finally, we explore the diffusivity distribution through the jump properties of the water molecules, which successfully leads to the inherent transient heterogeneity of the solutions. We observe that the heterogeneity increases with increasing DME content in the mixtures. Our study correlates the coupling between rotational and translational motions of water molecules in the mixtures.
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Affiliation(s)
- Debasish Das Mahanta
- Chemical, Biological and Macromolecular Sciences, S. N. Bose National Centre for Basic Sciences, Block-JD, Sector-III, Salt Lake, Kolkata, 700106, India.
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9
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Ensing B, Tiwari A, Tros M, Hunger J, Domingos SR, Pérez C, Smits G, Bonn M, Bonn D, Woutersen S. On the origin of the extremely different solubilities of polyethers in water. Nat Commun 2019; 10:2893. [PMID: 31253797 PMCID: PMC6599002 DOI: 10.1038/s41467-019-10783-z] [Citation(s) in RCA: 58] [Impact Index Per Article: 11.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2017] [Accepted: 05/21/2019] [Indexed: 11/09/2022] Open
Abstract
The solubilities of polyethers are surprisingly counter-intuitive. The best-known example is the difference between polyethylene glycol ([-CH2-CH2-O-]n) which is infinitely soluble, and polyoxymethylene ([-CH2-O-]n) which is completely insoluble in water, exactly the opposite of what one expects from the C/O ratios of these molecules. Similar anomalies exist for oligomeric and cyclic polyethers. To solve this apparent mystery, we use femtosecond vibrational and GHz dielectric spectroscopy with complementary ab initio calculations and molecular dynamics simulations. We find that the dynamics of water molecules solvating polyethers is fundamentally different depending on their C/O composition. The ab initio calculations and simulations show that this is not because of steric effects (as is commonly believed), but because the partial charge on the O atoms depends on the number of C atoms by which they are separated. Our results thus show that inductive effects can have a major impact on aqueous solubilities.
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Affiliation(s)
- Bernd Ensing
- Van 't Hoff Institute for Molecular Sciences, University of Amsterdam, Science Park 904, 1098XH, Amsterdam, The Netherlands.
| | - Ambuj Tiwari
- Van 't Hoff Institute for Molecular Sciences, University of Amsterdam, Science Park 904, 1098XH, Amsterdam, The Netherlands
| | - Martijn Tros
- Van 't Hoff Institute for Molecular Sciences, University of Amsterdam, Science Park 904, 1098XH, Amsterdam, The Netherlands
| | - Johannes Hunger
- Max Planck Institute for Polymer Research, Department of Molecular spectroscopy, Ackermannweg 10, 55128, Mainz, Germany.
| | - Sérgio R Domingos
- Deutsches Elektronen-Synchrotron DESY, Notkestraße 85, 22607, Hamburg, Germany
| | - Cristóbal Pérez
- Deutsches Elektronen-Synchrotron DESY, Notkestraße 85, 22607, Hamburg, Germany
| | - Gertien Smits
- Swammerdam Institute for Life Sciences, University of Amsterdam, Science Park 904, 1098XH, Amsterdam, The Netherlands
| | - Mischa Bonn
- Max Planck Institute for Polymer Research, Department of Molecular spectroscopy, Ackermannweg 10, 55128, Mainz, Germany.
| | - Daniel Bonn
- Institute of Physics, University of Amsterdam, Science Park 904, 1098XH, Amsterdam, The Netherlands
| | - Sander Woutersen
- Van 't Hoff Institute for Molecular Sciences, University of Amsterdam, Science Park 904, 1098XH, Amsterdam, The Netherlands.
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10
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Ta D, Tieu A, Zhu H, Le M, Ta T, Tran V, Wan S. Physical and chemical insights into molecular adsorption of copolymer’s monomers on Rutile surface. Chem Phys 2019. [DOI: 10.1016/j.chemphys.2018.12.011] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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11
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Wang KW, Betancourt T, Hall CK. Computational Study of DNA-Cross-Linked Hydrogel Formation for Drug Delivery Applications. Macromolecules 2018. [DOI: 10.1021/acs.macromol.8b01505] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
Affiliation(s)
- Kye Won Wang
- Department of Chemical Engineering, North Carolina State University, Raleigh, North Carolina 27606, United States
| | | | - Carol K. Hall
- Department of Chemical Engineering, North Carolina State University, Raleigh, North Carolina 27606, United States
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12
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Engelbrecht L, Mocci F, Laaksonen A, Koch KR. 195Pt NMR and Molecular Dynamics Simulation Study of the Solvation of [PtCl 6] 2- in Water-Methanol and Water-Dimethoxyethane Binary Mixtures. Inorg Chem 2018; 57:12025-12037. [PMID: 30215514 DOI: 10.1021/acs.inorgchem.8b01554] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The experimental 195Pt NMR chemical shift, δ(195Pt), of the [PtCl6]2- anion dissolved in binary mixtures of water and a fully miscible organic solvent is extremely sensitive to the composition of the mixture at room temperature. Significantly nonlinear δ(195Pt) trends as a function of solvent composition are observed in mixtures of water-methanol, or ethylene glycol, 2-methoxyethanol, and 1,2-dimethoxyethane (DME). The extent of the deviation from linearity of the δ(195Pt) trend depends strongly on the nature of the organic component in these solutions, which broadly suggests preferential solvation of the [PtCl6]2- anion by the organic molecule. This simplistic interpretation is based on an accepted view pertaining to monovalent cations in similar binary solvent mixtures. To elucidate these phenomena in detail, classical molecular dynamics computer simulations were performed for [PtCl6]2- in water-methanol and water-DME mixtures using the anionic charge scaling approach to account for the effect of electronic dielectric screening. Our simulations suggest that the simplistic model of preferential solvation of [PtCl6]2- by the organic component as inferred from nonlinear δ(195Pt) trends is not entirely accurate, particularly for water-DME mixtures. The δ(195Pt) trend in these mixtures levels off for high DME mole fractions, which results from apparent preferential location of [PtCl6]2- anions at the borders of water-rich regions or clusters within these inherently micro-heterogeneous mixtures. By contrast in water-methanol mixtures, apparently less pronounced mixed solvent micro-heterogeneity is found, suggesting the experimental δ(195Pt) trend is consistent with a more moderate preferential solvation of [PtCl6]2- anions. This finding underlines the important role of solvent-solvent interactions and micro-heterogeneity in determining the solvation environment of [PtCl6]2- anions in binary solvent mixtures, probed by highly sensitive 195Pt NMR. The notion that preferential solvation of [PtCl6]2- results primarily from competing ion-solvent interactions as generally assumed for monatomic ions, may not be appropriate in general.
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Affiliation(s)
- Leon Engelbrecht
- Department of Chemistry and Polymer Science , Stellenbosch University , Private Bag X1 , Matieland 7602 , South Africa.,Department of Chemical and Geological Sciences , University of Cagliari , I-09042 Monserrato , Italy.,Division of Physical Chemistry, Department of Materials and Environmental Chemistry, Arrhenius Laboratory , Stockholm University , 10691 Stockholm , Sweden
| | - Francesca Mocci
- Department of Chemical and Geological Sciences , University of Cagliari , I-09042 Monserrato , Italy
| | - Aatto Laaksonen
- Division of Physical Chemistry, Department of Materials and Environmental Chemistry, Arrhenius Laboratory , Stockholm University , 10691 Stockholm , Sweden.,Department of Chemistry-Ångström Laboratory , Uppsala University , Box 538, SE-75121 Uppsala , Sweden
| | - Klaus R Koch
- Department of Chemistry and Polymer Science , Stellenbosch University , Private Bag X1 , Matieland 7602 , South Africa
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13
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Das Mahanta D, Rana D, Patra A, Mukherjee B, Mitra RK. Heterogeneous structure and solvation dynamics of DME/water binary mixtures: A combined spectroscopic and simulation investigation. Chem Phys Lett 2018. [DOI: 10.1016/j.cplett.2018.04.003] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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14
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Oh MI, Consta S. Charging and Release Mechanisms of Flexible Macromolecules in Droplets. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2017; 28:2262-2279. [PMID: 28801879 DOI: 10.1007/s13361-017-1754-4] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/13/2016] [Revised: 05/28/2017] [Accepted: 05/29/2017] [Indexed: 06/07/2023]
Abstract
We study systematically the charging and release mechanisms of a flexible macromolecule, modeled by poly(ethylene glycol) (PEG), in a droplet by using molecular dynamics simulations. We compare how PEG is solvated and charged by sodium Na+ ions in a droplet of water (H2O), acetonitrile (MeCN), and their mixtures. Initially, we examine the location and the conformation of the macromolecule in a droplet bearing no net charge. It is revealed that the presence of charge carriers do not affect the location of PEG in aqueous and MeCN droplets compared with that in the neutral droplets, but the location of the macromolecule and the droplet size do affect the PEG conformation. PEG is charged on the surface of a sodiated aqueous droplet that is found close to the Rayleigh limit. Its charging is coupled to the extrusion mechanism, where PEG segments leave the droplet once they coordinate a Na+ ion or in a correlated motion with Na+ ions. In contrast, as PEG resides in the interior of a MeCN droplet, it is sodiated inside the droplet. The compact macro-ion transitions through partially unwound states to an extended conformation, a process occurring during the final stage of desolvation and in the presence of only a handful of MeCN molecules. For charged H2O/MeCN droplets, the sodiation of PEG is determined by the H2O component, reflecting its slower evaporation and preference over MeCN for solvating Na+ ions. We use the simulation data to construct an analytical model that suggests that the droplet surface electric field may play a role in the macro-ion-droplet interactions that lead to the extrusion of the macro-ion. This study provides the first evidence of the effect of the surface electric field by using atomistic simulations. Graphical Abstract ᅟ.
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Affiliation(s)
- Myong In Oh
- Department of Chemistry, The University of Western Ontario, London, ON, N6A 5B7, Canada
| | - Styliani Consta
- Department of Chemistry, The University of Western Ontario, London, ON, N6A 5B7, Canada.
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15
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Taddese T, Carbone P. Effect of Chain Length on the Partition Properties of Poly(ethylene oxide): Comparison between MARTINI Coarse-Grained and Atomistic Models. J Phys Chem B 2017; 121:1601-1609. [PMID: 28151665 DOI: 10.1021/acs.jpcb.6b10858] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The MARTINI coarse-grained beads are parameterized to match the partition coefficients of several organic molecules in different solvents. Here, we test the method when modeling the partitioning properties of poly(ethylene oxide) between solvents of different polarities. We show that, among the existing models, the latest model developed by Lee and co-workers [ Lee , H. ; Pastor , R. W. J. Phys. Chem. B 2011 , 115 , 7830 - 7837 ] is the one that most successfully reproduces the hydration free energy of short oligomers, although it predicts highly negative solvation free energies in octanol and hexane. We develop a new CG model matching the solvation free energy of the monomer in different solvents and propose a simple method to select the Lennard-Jones parameters that reproduce the desired partition coefficients. The model correctly reproduces water/hexane partition properties for oligomers up to 10 monomers but still suffers from a transferability problem for larger molecular weight.
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Affiliation(s)
- Tseden Taddese
- School of Chemical Engineering and Analytical Science, The University of Manchester , Oxford Road, Manchester M13 9PL, U.K
| | - Paola Carbone
- School of Chemical Engineering and Analytical Science, The University of Manchester , Oxford Road, Manchester M13 9PL, U.K
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16
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Lonardi A, Oborský P, Hünenberger PH. Solvent-Modulated Influence of Intramolecular Hydrogen-Bonding on the Conformational Properties of the Hydroxymethyl Group in Glucose and Galactose: A Molecular Dynamics Simulation Study. Helv Chim Acta 2016. [DOI: 10.1002/hlca.201600158] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Affiliation(s)
- Alice Lonardi
- Laboratory of Physical Chemistry; ETH Hönggerberg; HCI; CH-8093 Zürich Switzerland
| | - Pavel Oborský
- Laboratory of Physical Chemistry; ETH Hönggerberg; HCI; CH-8093 Zürich Switzerland
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17
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Das Mahanta D, Patra A, Samanta N, Luong TQ, Mukherjee B, Mitra RK. Non-monotonic dynamics of water in its binary mixture with 1,2-dimethoxy ethane: A combined THz spectroscopic and MD simulation study. J Chem Phys 2016; 145:164501. [DOI: 10.1063/1.4964857] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022] Open
Affiliation(s)
- Debasish Das Mahanta
- Chemical, Biological and Macromolecular Sciences, S. N. Bose National Centre for Basic Sciences, Block-JD, Sector-III, Salt Lake, Kolkata 700106, India
| | - Animesh Patra
- Chemical, Biological and Macromolecular Sciences, S. N. Bose National Centre for Basic Sciences, Block-JD, Sector-III, Salt Lake, Kolkata 700106, India
| | - Nirnay Samanta
- Chemical, Biological and Macromolecular Sciences, S. N. Bose National Centre for Basic Sciences, Block-JD, Sector-III, Salt Lake, Kolkata 700106, India
| | - Trung Quan Luong
- Department of Physical Chemistry II, Ruhr-University Bochum, 44780 Bochum, Germany
| | - Biswaroop Mukherjee
- Thematic Unit for Excellence–Computational Materials Science, S. N. Bose National Centre for Basic Sciences, Block-JD, Sector-III, Salt Lake, Kolkata 700106, India
| | - Rajib Kumar Mitra
- Chemical, Biological and Macromolecular Sciences, S. N. Bose National Centre for Basic Sciences, Block-JD, Sector-III, Salt Lake, Kolkata 700106, India
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18
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Karki KJ, Samanta S, Roccatano D. Molecular Properties of Astaxanthin in Water/Ethanol Solutions from Computer Simulations. J Phys Chem B 2016; 120:9322-8. [DOI: 10.1021/acs.jpcb.6b06055] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Affiliation(s)
| | - Susruta Samanta
- Department
of Physics, University of Cagliari, S.P. Monserrato-Sestu Km 0.700, I-09042, Monserrato, Cagliari, Italy
| | - Danilo Roccatano
- School
of Mathematics and Physics, University of Lincoln, Brayford Pool, LN6 7TS, Lincoln, U.K
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19
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Dahal UR, Dormidontova EE. Spontaneous Insertion, Helix Formation, and Hydration of Polyethylene Oxide in Carbon Nanotubes. PHYSICAL REVIEW LETTERS 2016; 117:027801. [PMID: 27447525 DOI: 10.1103/physrevlett.117.027801] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/30/2016] [Indexed: 06/06/2023]
Abstract
Hydration strongly affects macromolecular conformation in solution and under nanoconfinement as encountered in nature and nanomaterials. Using atomistic molecular dynamics simulations we demonstrate that polyethylene oxide spontaneously enters single wall carbon nanotubes (CNTs) from aqueous solutions and forms rodlike, helix, and wrapped chain conformations depending on the CNT diameter. We show that water organization and the stability of the polyethylene oxide hydration shell under confinement is responsible for the helix formation, which can have significant implications for nanomaterial design.
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Affiliation(s)
- Udaya R Dahal
- Polymer Program, Institute of Materials Science and Physics Department, University of Connecticut, Storrs, Connecticut 06269, USA
| | - Elena E Dormidontova
- Polymer Program, Institute of Materials Science and Physics Department, University of Connecticut, Storrs, Connecticut 06269, USA
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20
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Ta TD, Tieu AK, Zhu H, Zhu Q, Kosasih PB, Zhang J, Deng G. Tribological Behavior of Aqueous Copolymer Lubricant in Mixed Lubrication Regime. ACS APPLIED MATERIALS & INTERFACES 2016; 8:5641-5652. [PMID: 26828119 DOI: 10.1021/acsami.5b10905] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
Although a number of experiments have been attempted to investigate the lubrication of aqueous copolymer lubricant, which is applied widely in metalworking operations, a comprehensive theoretical investigation at atomistic level is still lacking. This study addresses the influence of loading pressure and copolymer concentration on the structural properties and tribological performance of aqueous copolymer solution of poly(propylene oxide)-poly(ethylene oxide)-poly(propylene oxide) (PPO-PEO-PPO) at mixed lubrication using a molecular dynamic (MD) simulation. An effective interfacial potential, which has been derived from density functional theory (DFT) calculations, was employed for the interactions between the fluid's molecules and iron surface. The simulation results have indicated that the triblock copolymer is physisorption on iron surface. Under confinement by iron surfaces, the copolymer molecules form lamellar structure in aqueous solution and behave differently from its bulk state. The lubrication performance of aqueous copolymer lubricant increases with concentration, but the friction reduction is insignificant at high loading pressure. Additionally, the plastic deformation of asperity is dependent on both copolymer concentration and loading pressure, and the wear behavior shows a linear dependence of friction force on the number of transferred atoms between contacting asperities.
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Affiliation(s)
- Thi D Ta
- School of Mechanical, Materials and Mechatronic Engineering, Faculty of Engineering and Information Sciences (EIS), University of Wollongong , Northfield Avenue, Wollongong, New South Wales 2522, Australia
| | - A Kiet Tieu
- School of Mechanical, Materials and Mechatronic Engineering, Faculty of Engineering and Information Sciences (EIS), University of Wollongong , Northfield Avenue, Wollongong, New South Wales 2522, Australia
| | - Hongtao Zhu
- School of Mechanical, Materials and Mechatronic Engineering, Faculty of Engineering and Information Sciences (EIS), University of Wollongong , Northfield Avenue, Wollongong, New South Wales 2522, Australia
| | - Qiang Zhu
- School of Mechanical, Materials and Mechatronic Engineering, Faculty of Engineering and Information Sciences (EIS), University of Wollongong , Northfield Avenue, Wollongong, New South Wales 2522, Australia
| | - Prabouno B Kosasih
- School of Mechanical, Materials and Mechatronic Engineering, Faculty of Engineering and Information Sciences (EIS), University of Wollongong , Northfield Avenue, Wollongong, New South Wales 2522, Australia
| | - Jie Zhang
- School of Mechanical, Materials and Mechatronic Engineering, Faculty of Engineering and Information Sciences (EIS), University of Wollongong , Northfield Avenue, Wollongong, New South Wales 2522, Australia
| | - Guanyu Deng
- School of Mechanical, Materials and Mechatronic Engineering, Faculty of Engineering and Information Sciences (EIS), University of Wollongong , Northfield Avenue, Wollongong, New South Wales 2522, Australia
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21
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Mauceri A, Fracassi A, D'Abramo M, Borocci S, Giansanti L, Piozzi A, Galantini L, Martino A, D'Aiuto V, Mancini G. Role of the hydrophilic spacer of glucosylated amphiphiles included in liposome formulations in the recognition of Concanavalin A. Colloids Surf B Biointerfaces 2015; 136:232-9. [DOI: 10.1016/j.colsurfb.2015.09.016] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2015] [Revised: 09/08/2015] [Accepted: 09/09/2015] [Indexed: 10/23/2022]
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22
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Wada R, Fujimoto K, Kato M. Why Is Poly(oxyethylene) Soluble in Water? Evidence from the Thermodynamic Profile of the Conformational Equilibria of 1,2-Dimethoxyethane and Dimethoxymethane Revealed by Raman Spectroscopy. J Phys Chem B 2014; 118:12223-31. [DOI: 10.1021/jp5048997] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Ryoichi Wada
- Graduate School of Science and Engineering, ‡Department of Pharmacy,
College of
Pharmaceutical Sciences, and §Graduate School of Life Science, Ritsumeikan University, 1-1-1 Nojihigashi, Kusatsu, Shiga 525-8577, Japan
| | - Kazushi Fujimoto
- Graduate School of Science and Engineering, ‡Department of Pharmacy,
College of
Pharmaceutical Sciences, and §Graduate School of Life Science, Ritsumeikan University, 1-1-1 Nojihigashi, Kusatsu, Shiga 525-8577, Japan
| | - Minoru Kato
- Graduate School of Science and Engineering, ‡Department of Pharmacy,
College of
Pharmaceutical Sciences, and §Graduate School of Life Science, Ritsumeikan University, 1-1-1 Nojihigashi, Kusatsu, Shiga 525-8577, Japan
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23
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Zhou X, Xi W, Luo Y, Cao S, Wei G. Interactions of a Water-Soluble Fullerene Derivative with Amyloid-β Protofibrils: Dynamics, Binding Mechanism, and the Resulting Salt-Bridge Disruption. J Phys Chem B 2014; 118:6733-41. [DOI: 10.1021/jp503458w] [Citation(s) in RCA: 43] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Affiliation(s)
- Xiaoying Zhou
- State Key Laboratory of Surface Physics,
Key Laboratory for Computational Physical Sciences (Ministry of Education), Department of Physics, Fudan University, 220 Handan Road, Shanghai 200433, People’s Republic of China
| | - Wenhui Xi
- State Key Laboratory of Surface Physics,
Key Laboratory for Computational Physical Sciences (Ministry of Education), Department of Physics, Fudan University, 220 Handan Road, Shanghai 200433, People’s Republic of China
| | - Yin Luo
- State Key Laboratory of Surface Physics,
Key Laboratory for Computational Physical Sciences (Ministry of Education), Department of Physics, Fudan University, 220 Handan Road, Shanghai 200433, People’s Republic of China
| | - Siqin Cao
- State Key Laboratory of Surface Physics,
Key Laboratory for Computational Physical Sciences (Ministry of Education), Department of Physics, Fudan University, 220 Handan Road, Shanghai 200433, People’s Republic of China
| | - Guanghong Wei
- State Key Laboratory of Surface Physics,
Key Laboratory for Computational Physical Sciences (Ministry of Education), Department of Physics, Fudan University, 220 Handan Road, Shanghai 200433, People’s Republic of China
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24
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De Nicola A, Hezaveh S, Zhao Y, Kawakatsu T, Roccatano D, Milano G. Micellar drug nanocarriers and biomembranes: how do they interact? Phys Chem Chem Phys 2014; 16:5093-105. [DOI: 10.1039/c3cp54242d] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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25
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Choi E, Mondal J, Yethiraj A. Coarse-grained models for aqueous polyethylene glycol solutions. J Phys Chem B 2013; 118:323-9. [PMID: 24350686 DOI: 10.1021/jp408392b] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
A new coarse-grained force field is developed for polyethylene glycol (PEG) in water. The force field is based on the MARTINI model but with the big multipole water (BMW) model for the solvent. The polymer force field is reparameterized using the MARTINI protocol. The new force field removes the ring-like conformations seen in simulations of short chains with the MARTINI force field; these conformations are not observed in atomistic simulations. We also investigate the effect of using parameters for the end-group that are different from those for the repeat units, with the MARTINI and BMW/MARTINI models. We find that the new BMW/MARTINI force field removes the ring-like conformations seen in the MARTINI models and has more accurate predictions for the density of neat PEG. However, solvent-separated-pairs between chain ends and slow dynamics of the PEG reflect its own artifacts. We also carry out fine-grained simulations of PEG with bundled water clusters and show that the water bundling can lead to ring-like conformations of the polymer molecules. The simulations emphasize the pitfalls of coarse-graining several molecules into one site and suggest that polymer-solvent systems might be a stringent test for coarse-grained force fields.
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Affiliation(s)
- Eunsong Choi
- Department of Physics, and ‡Department of Chemistry, University of Wisconsin , Madison, Wisconsin 53706, United States
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26
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Samanta S, Hezaveh S, Roccatano D. Theoretical Study of Binding and Permeation of Ether-Based Polymers through Interfaces. J Phys Chem B 2013; 117:14723-31. [DOI: 10.1021/jp4028832] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Susruta Samanta
- School of Engineering and
Science, Jacobs University Bremen, Campus Ring 1, 28759 Bremen, Germany
| | - Samira Hezaveh
- School of Engineering and
Science, Jacobs University Bremen, Campus Ring 1, 28759 Bremen, Germany
| | - Danilo Roccatano
- School of Engineering and
Science, Jacobs University Bremen, Campus Ring 1, 28759 Bremen, Germany
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27
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De Nicola A, Kawakatsu T, Milano G. A Hybrid Particle-Field Coarse-Grained Molecular Model for Pluronics Water Mixtures. MACROMOL CHEM PHYS 2013. [DOI: 10.1002/macp.201300214] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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28
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Samanta S, Roccatano D. Interaction of Curcumin with PEO–PPO–PEO Block Copolymers: A Molecular Dynamics Study. J Phys Chem B 2013; 117:3250-7. [DOI: 10.1021/jp309476u] [Citation(s) in RCA: 44] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Affiliation(s)
- Susruta Samanta
- School of Engineering
and Science, Jacobs University Bremen, Campus Ring 1, 28759, Bremen, Germany
| | - Danilo Roccatano
- School of Engineering
and Science, Jacobs University Bremen, Campus Ring 1, 28759, Bremen, Germany
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29
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Hezaveh S, Samanta S, De Nicola A, Milano G, Roccatano D. Understanding the interaction of block copolymers with DMPC lipid bilayer using coarse-grained molecular dynamics simulations. J Phys Chem B 2012; 116:14333-45. [PMID: 23137298 DOI: 10.1021/jp306565e] [Citation(s) in RCA: 70] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
Abstract
In this paper, we present a computational model of the adsorption and percolation mechanism of poloxamers (poly(ethylene oxide) (PEO) and poly(propylene oxide) (PPO) triblock copolymers) across a 1,2-dimyristoyl-sn-glycero-3-phosphocholine (DMPC) lipid bilayer. A coarse-grained model was used to cope with the long time scale of the percolation process. The simulations have provided details of the interaction mechanism of Pluronics with lipid bilayer. In particular, the results have shown that polymer chains containing a PPO block with a length comparable to the DMPC bilayer thickness, such as P85, tends to percolate across the lipid bilayer. On the contrary, Pluronics with a shorter PPO chain, such as L64 and F38, insert partially into the membrane with the PPO block part while the PEO blocks remain in water on one side of the lipid bilayer. The percolation of the polymers into the lipid tail groups reduces the membrane thickness and increases the area per lipid. These effects are more evident for P85 than L64 or F38. Our findings are qualitatively in good agreement with published small-angle X-ray scattering experiments that have evidenced a thinning effect of Pluronics on the lipid bilayer as well as the role of the length of the PPO block on the permeation process of the polymer through the lipid bilayer. Our theoretical results complement the experimental data with a detailed structural and dynamic model of poloxamers at the interface and inside the lipid bilayer.
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Affiliation(s)
- Samira Hezaveh
- Jacobs University Bremen, Campus Ring 1, D-28759 Bremen, Germany
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30
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Fuchs PFJ, Hansen HS, Hünenberger PH, Horta BAC. A GROMOS Parameter Set for Vicinal Diether Functions: Properties of Polyethyleneoxide and Polyethyleneglycol. J Chem Theory Comput 2012; 8:3943-63. [DOI: 10.1021/ct300245h] [Citation(s) in RCA: 55] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Patrick F. J. Fuchs
- INSERM, U665, F-75739 Paris, France
- Univ Paris Diderot, Sorbonne Paris Cité, UMR_S 665, F-75739 Paris, France
- Institut National de la Transfusion Sanguine, F-75739 Paris, France
- CNRS, Laboratoire d’Imagerie Paramétrique, UMR 7623, 75006
Paris, France
| | - Halvor S. Hansen
- Laboratory
of Physical Chemistry, ETH Zürich, CH-8093 Zürich, Switzerland
| | | | - Bruno A. C. Horta
- Laboratory
of Physical Chemistry, ETH Zürich, CH-8093 Zürich, Switzerland
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31
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Samanta S, Hezaveh S, Milano G, Roccatano D. Correction to “Diffusion of 1,2-Dimethoxyethane and 1,2-Dimethoxypropane through Phosphatidycholine Bilayers: A Molecular Dynamics Study”. J Phys Chem B 2012. [DOI: 10.1021/jp3066647] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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32
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Hezaveh S, Samanta S, Milano G, Roccatano D. Molecular dynamics simulation study of solvent effects on conformation and dynamics of polyethylene oxide and polypropylene oxide chains in water and in common organic solvents. J Chem Phys 2012; 136:124901. [DOI: 10.1063/1.3694736] [Citation(s) in RCA: 48] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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33
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Samanta S, Hezaveh S, Milano G, Roccatano D. Diffusion of 1,2-Dimethoxyethane and 1,2-Dimethoxypropane through Phosphatidycholine Bilayers: A Molecular Dynamics Study. J Phys Chem B 2012; 116:5141-51. [DOI: 10.1021/jp211564x] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Susruta Samanta
- School of Engineering and Science, Jacobs University Bremen, Campus Ring 1, D-28759 Bremen,
Germany
| | - Samira Hezaveh
- School of Engineering and Science, Jacobs University Bremen, Campus Ring 1, D-28759 Bremen,
Germany
| | - Giuseppe Milano
- Department of Chemistry, University of Salerno, I-84084 Fisciano (Salerno),
Italy
| | - Danilo Roccatano
- School of Engineering and Science, Jacobs University Bremen, Campus Ring 1, D-28759 Bremen,
Germany
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