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For: Michel M, Kapfer SC, Krauth W. Generalized event-chain Monte Carlo: Constructing rejection-free global-balance algorithms from infinitesimal steps. J Chem Phys 2014;140:054116. [DOI: 10.1063/1.4863991] [Citation(s) in RCA: 71] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
Number Cited by Other Article(s)
1
Guyon T, Guillin A, Michel M. Necessary and sufficient symmetries in Event-Chain Monte Carlo with generalized flows and application to hard dimers. J Chem Phys 2024;160:024117. [PMID: 38205853 DOI: 10.1063/5.0168077] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2023] [Accepted: 12/07/2023] [Indexed: 01/12/2024]  Open
2
Ghimenti F, Berthier L, Szamel G, van Wijland F. Sampling Efficiency of Transverse Forces in Dense Liquids. PHYSICAL REVIEW LETTERS 2023;131:257101. [PMID: 38181341 DOI: 10.1103/physrevlett.131.257101] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/21/2023] [Accepted: 11/22/2023] [Indexed: 01/07/2024]
3
Blümich B, Parziale M, Augustine M. Asymmetry in three-site relaxation exchange NMR. MAGNETIC RESONANCE (GOTTINGEN, GERMANY) 2023;4:217-229. [PMID: 37904857 PMCID: PMC10539757 DOI: 10.5194/mr-4-217-2023] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/08/2023] [Accepted: 07/23/2023] [Indexed: 11/01/2023]
4
The virial theorem with periodic boundary conditions. Chem Phys Lett 2023. [DOI: 10.1016/j.cplett.2023.140389] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/27/2023]
5
Li B, Nishikawa Y, Höllmer P, Carillo L, Maggs AC, Krauth W. Hard-disk pressure computations-a historic perspective. J Chem Phys 2022;157:234111. [PMID: 36550024 DOI: 10.1063/5.0126437] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]  Open
6
Bertazzi A, Bierkens J, Dobson P. Approximations of Piecewise Deterministic Markov Processes and their convergence properties. Stoch Process Their Appl 2022. [DOI: 10.1016/j.spa.2022.09.004] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 10/14/2022]
7
Roet S, Zhang DT, van Erp TS. Exchanging Replicas with Unequal Cost, Infinitely and Permanently. J Phys Chem A 2022;126:8878-8886. [DOI: 10.1021/acs.jpca.2c06004] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
8
Bertazzi A, Bierkens J. Adaptive schemes for piecewise deterministic Monte Carlo algorithms. BERNOULLI 2022. [DOI: 10.3150/21-bej1423] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
9
Suwa H. Lifted directed-worm algorithm. Phys Rev E 2022;106:055306. [PMID: 36559387 DOI: 10.1103/physreve.106.055306] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2022] [Accepted: 10/07/2022] [Indexed: 06/17/2023]
10
Bierkens J, Kamatani K, Roberts GO. High-dimensional scaling limits of piecewise deterministic sampling algorithms. ANN APPL PROBAB 2022. [DOI: 10.1214/21-aap1762] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
11
Chevallier A, Fearnhead P, Sutton M. Reversible Jump PDMP Samplers for Variable Selection. J Am Stat Assoc 2022. [DOI: 10.1080/01621459.2022.2099402] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
12
Höllmer P, Maggs AC, Krauth W. Hard-disk dipoles and non-reversible Markov chains. J Chem Phys 2022;156:084108. [DOI: 10.1063/5.0080101] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
13
Maggs AC, Krauth W. Large-scale dynamics of event-chain Monte Carlo. Phys Rev E 2022;105:015309. [PMID: 35193224 DOI: 10.1103/physreve.105.015309] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2021] [Accepted: 01/06/2022] [Indexed: 06/14/2023]
14
Deligiannidis G, Paulin D, Bouchard-Côté A, Doucet A. Randomized Hamiltonian Monte Carlo as scaling limit of the bouncy particle sampler and dimension-free convergence rates. ANN APPL PROBAB 2021. [DOI: 10.1214/20-aap1659] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
15
Andrieu C, Durmus A, Nüsken N, Roussel J. Hypocoercivity of piecewise deterministic Markov process-Monte Carlo. ANN APPL PROBAB 2021. [DOI: 10.1214/20-aap1653] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
16
Liang Y, Ma B, Olvera de la Cruz M. Reverse order-disorder transition of Janus particles confined in two dimensions. Phys Rev E 2021;103:062607. [PMID: 34271742 DOI: 10.1103/physreve.103.062607] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2020] [Accepted: 05/03/2021] [Indexed: 11/07/2022]
17
Klement M, Lee S, Anderson JA, Engel M. Newtonian Event-Chain Monte Carlo and Collision Prediction with Polyhedral Particles. J Chem Theory Comput 2021;17:4686-4696. [PMID: 34255505 DOI: 10.1021/acs.jctc.1c00311] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
18
Zheng M, Charbonneau P. Characterization and efficient Monte Carlo sampling of disordered microphases. J Chem Phys 2021;154:244506. [DOI: 10.1063/5.0052114] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]  Open
19
Dijkstra M, Luijten E. From predictive modelling to machine learning and reverse engineering of colloidal self-assembly. NATURE MATERIALS 2021;20:762-773. [PMID: 34045705 DOI: 10.1038/s41563-021-01014-2] [Citation(s) in RCA: 53] [Impact Index Per Article: 17.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/20/2020] [Accepted: 04/19/2021] [Indexed: 06/12/2023]
20
Sampedro Ruiz P, Ni R. Effect of particle size distribution on polydisperse hard disks. J Chem Phys 2020;153:174501. [PMID: 33167632 DOI: 10.1063/5.0026910] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
21
Durmus A, Guillin A, Monmarché P. Geometric ergodicity of the Bouncy Particle Sampler. ANN APPL PROBAB 2020. [DOI: 10.1214/19-aap1552] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
22
Hatch HW. Parallel Prefetching for Canonical Ensemble Monte Carlo Simulations. J Phys Chem A 2020;124:7191-7198. [PMID: 32841030 PMCID: PMC7808336 DOI: 10.1021/acs.jpca.0c05242] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
23
Müller D, Kampmann TA, Kierfeld J. Chaining of hard disks in nematic needles: particle-based simulation of colloidal interactions in liquid crystals. Sci Rep 2020;10:12718. [PMID: 32728132 PMCID: PMC7391704 DOI: 10.1038/s41598-020-69544-4] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2020] [Accepted: 07/10/2020] [Indexed: 11/30/2022]  Open
24
Michel M, Durmus A, Sénécal S. Forward Event-Chain Monte Carlo: Fast Sampling by Randomness Control in Irreversible Markov Chains. J Comput Graph Stat 2020. [DOI: 10.1080/10618600.2020.1750417] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
25
Faizi F, Deligiannidis G, Rosta E. Efficient Irreversible Monte Carlo Samplers. J Chem Theory Comput 2020;16:2124-2138. [PMID: 32097548 DOI: 10.1021/acs.jctc.9b01135] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
26
Martinsons M, Hielscher J, Kapfer SC, Schmiedeberg M. Event-chain Monte Carlo simulations of the liquid to solid transition of two-dimensional decagonal colloidal quasicrystals. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2019;31:475103. [PMID: 31342938 DOI: 10.1088/1361-648x/ab3519] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
27
Bierkens J, Roberts GO, Zitt PA. Ergodicity of the zigzag process. ANN APPL PROBAB 2019. [DOI: 10.1214/18-aap1453] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
28
Deligiannidis G, Bouchard-Côté A, Doucet A. Exponential ergodicity of the bouncy particle sampler. Ann Stat 2019. [DOI: 10.1214/18-aos1714] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
29
Lei Z, Krauth W, Maggs AC. Event-chain Monte Carlo with factor fields. Phys Rev E 2019;99:043301. [PMID: 31108644 DOI: 10.1103/physreve.99.043301] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2018] [Indexed: 11/07/2022]
30
Klement M, Engel M. Efficient equilibration of hard spheres with Newtonian event chains. J Chem Phys 2019;150:174108. [DOI: 10.1063/1.5090882] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
31
Rotskoff GM, Vanden-Eijnden E. Dynamical Computation of the Density of States and Bayes Factors Using Nonequilibrium Importance Sampling. PHYSICAL REVIEW LETTERS 2019;122:150602. [PMID: 31050526 DOI: 10.1103/physrevlett.122.150602] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/01/2018] [Revised: 02/27/2019] [Indexed: 06/09/2023]
32
Michel M, Tan X, Deng Y. Clock Monte Carlo methods. Phys Rev E 2019;99:010105. [PMID: 30780261 DOI: 10.1103/physreve.99.010105] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2017] [Indexed: 11/07/2022]
33
Hajibabaei A, Kim KS. First-order and continuous melting transitions in two-dimensional Lennard-Jones systems and repulsive disks. Phys Rev E 2019;99:022145. [PMID: 30934337 DOI: 10.1103/physreve.99.022145] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/23/2017] [Indexed: 06/09/2023]
34
Storm FE, Rasmussen MH, Mikkelsen KV, Hansen T. Computational construction of the electronic Hamiltonian for photoinduced electron transfer and Redfield propagation. Phys Chem Chem Phys 2019;21:17366-17377. [DOI: 10.1039/c9cp03297e] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
35
Royall CP, Turci F, Tatsumi S, Russo J, Robinson J. The race to the bottom: approaching the ideal glass? JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2018;30:363001. [PMID: 29972145 DOI: 10.1088/1361-648x/aad10a] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
36
Faulkner MF, Qin L, Maggs AC, Krauth W. All-atom computations with irreversible Markov chains. J Chem Phys 2018;149:064113. [DOI: 10.1063/1.5036638] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
37
Stones AE, Dullens RPA, Aarts DGAL. Communication: Contact values of pair distribution functions in colloidal hard disks by test-particle insertion. J Chem Phys 2018;148:241102. [PMID: 29960354 DOI: 10.1063/1.5038668] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]  Open
38
Bouchard-Côté A, Vollmer SJ, Doucet A. The Bouncy Particle Sampler: A Nonreversible Rejection-Free Markov Chain Monte Carlo Method. J Am Stat Assoc 2018. [DOI: 10.1080/01621459.2017.1294075] [Citation(s) in RCA: 35] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
39
Hu Y, Charbonneau P. Clustering and assembly dynamics of a one-dimensional microphase former. SOFT MATTER 2018;14:4101-4109. [PMID: 29578236 DOI: 10.1039/c8sm00315g] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
40
Kapfer SC, Krauth W. Irreversible Local Markov Chains with Rapid Convergence towards Equilibrium. PHYSICAL REVIEW LETTERS 2017;119:240603. [PMID: 29286756 DOI: 10.1103/physrevlett.119.240603] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/25/2017] [Indexed: 06/07/2023]
41
Russo J, Wilding NB. Disappearance of the Hexatic Phase in a Binary Mixture of Hard Disks. PHYSICAL REVIEW LETTERS 2017;119:115702. [PMID: 28949239 DOI: 10.1103/physrevlett.119.115702] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/15/2017] [Indexed: 06/07/2023]
42
Callaham J, Machta J. Population annealing simulations of a binary hard-sphere mixture. Phys Rev E 2017;95:063315. [PMID: 28709207 DOI: 10.1103/physreve.95.063315] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2017] [Indexed: 11/07/2022]
43
Kapfer SC, Krauth W. Cell-veto Monte Carlo algorithm for long-range systems. Phys Rev E 2016;94:031302. [PMID: 27739718 DOI: 10.1103/physreve.94.031302] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2016] [Indexed: 06/06/2023]
44
Isobe M. Hard sphere simulation in statistical physics — methodologies and applications. MOLECULAR SIMULATION 2016. [DOI: 10.1080/08927022.2016.1139106] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
45
Sakai Y, Hukushima K. Eigenvalue analysis of an irreversible random walk with skew detailed balance conditions. Phys Rev E 2016;93:043318. [PMID: 27176439 DOI: 10.1103/physreve.93.043318] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2015] [Indexed: 06/05/2023]
46
Nishikawa Y, Michel M, Krauth W, Hukushima K. Event-chain algorithm for the Heisenberg model: Evidence for z≃1 dynamic scaling. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2015;92:063306. [PMID: 26764852 DOI: 10.1103/physreve.92.063306] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/05/2015] [Indexed: 06/05/2023]
47
Kampmann TA, Boltz HH, Kierfeld J. Monte Carlo simulation of dense polymer melts using event chain algorithms. J Chem Phys 2015;143:044105. [PMID: 26233105 DOI: 10.1063/1.4927084] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
48
Isobe M, Krauth W. Hard-sphere melting and crystallization with event-chain Monte Carlo. J Chem Phys 2015;143:084509. [DOI: 10.1063/1.4929529] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]  Open
49
Kapfer SC, Krauth W. Two-dimensional melting: from liquid-hexatic coexistence to continuous transitions. PHYSICAL REVIEW LETTERS 2015;114:035702. [PMID: 25659008 DOI: 10.1103/physrevlett.114.035702] [Citation(s) in RCA: 123] [Impact Index Per Article: 13.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/02/2014] [Indexed: 05/15/2023]
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