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Sithamparam M, Afrin R, Tharumen N, He MJ, Chen C, Yi R, Wang PH, Jia TZ, Chandru K. Probing the Limits of Reactant Concentration and Volume in Primitive Polyphenyllactate Synthesis and Microdroplet Assembly Processes. ACS BIO & MED CHEM AU 2025; 5:131-142. [PMID: 39990942 PMCID: PMC11843335 DOI: 10.1021/acsbiomedchemau.4c00082] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/27/2024] [Revised: 12/30/2024] [Accepted: 12/30/2024] [Indexed: 02/25/2025]
Abstract
Polyester microdroplets have been investigated as primitive protocell models that can exhibit relevant primitive functions such as biomolecule segregation, coalescence, and salt uptake. Such microdroplets assemble after dehydration synthesis of alpha-hydroxy acid (αHA) monomers, commonly available on early Earth, via heating at mild temperatures, followed by rehydration in aqueous media. αHAs, in particular, are also ubiquitous in biology, participating in a variety of biochemical processes such as metabolism, suggesting the possible strong link between primitive and modern αHA-based processes. Although some primitive αHA polymerization conditions have been probed previously, including monomer chirality and reaction temperature, relevant factors pertaining to early Earth's local environmental conditions that would likely affect primitive αHA polymerization are yet to be fully investigated. Hence, probing the entire breadth of possible conditions that could promote primitive αHA polymerization is required to understand the plausibility of polyester microdroplet assembly on early Earth at the origin of life. In particular, there are numerous aqueous environments available on early Earth that could have resulted in varying volumes and concentrations of αHA accumulation, which would have affected subsequent αHA polymerization reactions. Similarly, there were likely varying levels of salt in the various aqueous prebiotic solutions, such as in the ocean, lakes, and small pools, that may have affected primitive reactions. Here, we probe the limits of the dehydration synthesis and subsequent membraneless microdroplet (MMD) assembly of phenyllactic acid (PA), a well-studied αHA relevant to both biology and prebiotic chemistry, with respect to reactant concentration and volume and salinity through mass spectrometry- and microscopy-based observations. Our study showed that polymerization and subsequent microdroplet assembly of PA appear robust even at low reactant concentrations, smaller volumes, and higher salinities than those previously tested. This indicates that PA-polyester and its microdroplets are very much viable under a wide variety of conditions, thus more likely participating in prebiotic chemistries at the origins of life.
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Affiliation(s)
- Mahendran Sithamparam
- Space
Science Center (ANGKASA), Institute of Climate Change, National University of Malaysia, Selangor 43650, Malaysia
| | - Rehana Afrin
- Earth-Life
Science Institute, Institute of Future Science, Institute of Science Tokyo, 2-12-1-IE-1 Ookayama, Meguro-ku, Tokyo 152-8550, Japan
| | - Navaniswaran Tharumen
- Space
Science Center (ANGKASA), Institute of Climate Change, National University of Malaysia, Selangor 43650, Malaysia
| | - Ming-Jing He
- Department
of Chemical Engineering and Materials Engineering, National Central University, No. 300, Zhongda Rd., Zhongli District, Taoyuan 32001, Taiwan (R.O.C.)
| | - Chen Chen
- Biofunctional
Catalyst Research Team, RIKEN Center for Sustainable Resource Science
(CSRS), 2-1 Hirosawa, Wako, Saitama 351-0198, Japan
| | - Ruiqin Yi
- State
Key Laboratory of Isotope Geochemistry and CAS Center for Excellence
in Deep Earth Science, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China
| | - Po-Hsiang Wang
- Department
of Chemical Engineering and Materials Engineering, National Central University, No. 300, Zhongda Rd., Zhongli District, Taoyuan 32001, Taiwan (R.O.C.)
- Graduate
Institute of Environmental Engineering, National Central University, No. 300, Zhongda Road, Zhongli District, Taoyuan City 320, Taiwan
| | - Tony Z. Jia
- Earth-Life
Science Institute, Institute of Future Science, Institute of Science Tokyo, 2-12-1-IE-1 Ookayama, Meguro-ku, Tokyo 152-8550, Japan
- Blue Marble
Space Institute of Science, 600 first Ave, Floor 1, Seattle, Washington 98104, United States
| | - Kuhan Chandru
- Space
Science Center (ANGKASA), Institute of Climate Change, National University of Malaysia, Selangor 43650, Malaysia
- Polymer Research
Center (PORCE), Faculty of Science and Technology, National University of Malaysia, Selangor 43600 Malaysia
- Institute
of Physical Chemistry, CENIDE, University
of Duisburg-Essen, 45141 Essen, Germany
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2
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Bocková J, Jones NC, Hoffmann SV, Meinert C. The astrochemical evolutionary traits of phospholipid membrane homochirality. Nat Rev Chem 2024; 8:652-664. [PMID: 39025922 DOI: 10.1038/s41570-024-00627-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 06/05/2024] [Indexed: 07/20/2024]
Abstract
Compartmentalization is crucial for the evolution of life. Present-day phospholipid membranes exhibit a high level of complexity and species-dependent homochirality, the so-called lipid divide. It is possible that less stable, yet more dynamic systems, promoting out-of-equilibrium environments, facilitated the evolution of life at its early stages. The composition of the preceding primitive membranes and the evolutionary route towards complexity and homochirality remain unexplained. Organics-rich carbonaceous chondrites are evidence of the ample diversity of interstellar chemistry, which may have enriched the prebiotic milieu on early Earth. This Review evaluates the detections of simple amphiphiles - likely ancestors of membrane phospholipids - in extraterrestrial samples and analogues, along with potential pathways to form primitive compartments on primeval Earth. The chiroptical properties of the chiral backbones of phospholipids provide a guide for future investigations into the origins of phospholipid membrane homochirality. We highlight a plausible common pathway towards homochirality of lipids, amino acids, and sugars starting from enantioenriched monomers. Finally, given their high recalcitrance and resistance to degradation, lipids are among the best candidate biomarkers in exobiology.
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Affiliation(s)
- Jana Bocková
- Institut de Chimie de Nice, CNRS UMR 7272, Université Côte d'Azur, Nice, France
| | - Nykola C Jones
- ISA, Department of Physics and Astronomy, Aarhus University, Aarhus, Denmark
| | - Søren V Hoffmann
- ISA, Department of Physics and Astronomy, Aarhus University, Aarhus, Denmark
| | - Cornelia Meinert
- Institut de Chimie de Nice, CNRS UMR 7272, Université Côte d'Azur, Nice, France.
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3
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Seitz C, Geisberger T, West AR, Fertl J, Eisenreich W, Huber C. From Zero to Hero: The Cyanide-Free Formation of Amino Acids and Amides from Acetylene, Ammonia and Carbon Monoxide in Aqueous Environments in a Simulated Hadean Scenario. Life (Basel) 2024; 14:719. [PMID: 38929702 PMCID: PMC11204499 DOI: 10.3390/life14060719] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2024] [Revised: 05/27/2024] [Accepted: 05/29/2024] [Indexed: 06/28/2024] Open
Abstract
Amino acids are one of the most important building blocks of life. During the biochemical process of translation, cells sequentially connect amino acids via amide bonds to synthesize proteins, using the genetic information in messenger RNA (mRNA) as a template. From a prebiotic perspective (i.e., without enzymatic catalysis), joining amino acids to peptides via amide bonds is difficult due to the highly endergonic nature of the condensation reaction. We show here that amides can be formed in reactions catalyzed by the transition metal sulfides from acetylene, carbon monoxide and ammonia under aqueous conditions. Some α- and β-amino acids were also formed under the same conditions, demonstrating an alternative cyanide-free path for the formation of amino acids in prebiotic environments. Experiments performed with stable isotope labeled precursors, like 15NH4Cl and 13C-acetylene, enabled the accurate mass spectroscopic identification of the products formed from the starting materials and their composition. Reactions catalyzed using the transition metal sulfides seem to offer a promising alternative pathway for the formation of amides and amino acids in prebiotic environments, bypassing the challenges posed by the highly endergonic condensation reaction. These findings shed light on the potential mechanisms by which the building blocks of life could have originated on early Earth.
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Affiliation(s)
| | | | | | | | | | - Claudia Huber
- Bayerisches NMR Zentrum, Strukturelle Membranbiochemie, Technische Universität München, Lichtenbergstr. 4, 85748 Garching, Germany; (C.S.); (T.G.); (A.R.W.); (J.F.); (W.E.)
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4
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Buckner DK, Anderson MJ, Wisnosky S, Alvarado W, Nuevo M, Williams AJ, Ricco AJ, Anamika, Debic S, Friend L, Hoac T, Jahnke L, Radosevich L, Williams R, Wilhelm MB. Quantifying Global Origin-Diagnostic Features and Patterns in Biotic and Abiotic Acyclic Lipids for Life Detection. ASTROBIOLOGY 2024; 24:1-35. [PMID: 38150549 DOI: 10.1089/ast.2023.0012] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/29/2023]
Abstract
Lipids are a geologically robust class of organics ubiquitous to life as we know it. Lipid-like soluble organics are synthesized abiotically and have been identified in carbonaceous meteorites and on Mars. Ascertaining the origin of lipids on Mars would be a profound astrobiological achievement. We enumerate origin-diagnostic features and patterns in two acyclic lipid classes, fatty acids (i.e., carboxylic acids) and acyclic hydrocarbons, by collecting and analyzing molecular data reported in over 1500 samples from previously published studies of terrestrial and meteoritic organics. We identify 27 combined (15 for fatty acids, 12 for acyclic hydrocarbons) molecular patterns and structural features that can aid in distinguishing biotic from abiotic synthesis. Principal component analysis (PCA) demonstrates that multivariate analyses of molecular features (16 for fatty acids, 14 for acyclic hydrocarbons) can potentially indicate sample origin. Terrestrial lipids are dominated by longer straight-chain molecules (C4-C34 fatty acids, C14-C46 acyclic hydrocarbons), with predominance for specific branched and unsaturated isomers. Lipid-like meteoritic soluble organics are shorter, with random configurations. Organic solvent-extraction techniques are most commonly reported, motivating the design of our novel instrument, the Extractor for Chemical Analysis of Lipid Biomarkers in Regolith (ExCALiBR), which extracts lipids while preserving origin-diagnostic features that can indicate biogenicity.
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Affiliation(s)
- Denise K Buckner
- Department of Geological Sciences, University of Florida, Gainesville, Florida, USA
- Blue Marble Space Institute of Science, Seattle, Washington, USA
- Space Science & Astrobiology Division, NASA Ames Research Center, Moffett Field, California, USA
| | - Morgan J Anderson
- Space Science & Astrobiology Division, NASA Ames Research Center, Moffett Field, California, USA
- Axient Corporation, Huntsville, Alabama, USA
| | - Sydney Wisnosky
- Axient Corporation, Huntsville, Alabama, USA
- Department of Biology, University of Miami, Coral Gables, Florida, USA
| | - Walter Alvarado
- Space Science & Astrobiology Division, NASA Ames Research Center, Moffett Field, California, USA
- Pritzker School of Molecular Engineering, University of Chicago, Chicago, Illinois, USA
| | - Michel Nuevo
- Space Science & Astrobiology Division, NASA Ames Research Center, Moffett Field, California, USA
| | - Amy J Williams
- Department of Geological Sciences, University of Florida, Gainesville, Florida, USA
| | - Antonio J Ricco
- Space Science & Astrobiology Division, NASA Ames Research Center, Moffett Field, California, USA
- Electrical Engineering-Integrated Circuits Laboratory, Stanford University, Stanford, California, USA
| | - Anamika
- Department of Space Studies, University of North Dakota, Grand Forks, North Dakota, USA
| | - Sara Debic
- Department of Biology, Johns Hopkins University, Baltimore, Maryland, USA
| | | | - Trinh Hoac
- Axient Corporation, Huntsville, Alabama, USA
| | - Linda Jahnke
- Space Science & Astrobiology Division, NASA Ames Research Center, Moffett Field, California, USA
| | | | - Ross Williams
- Civil & Environmental Engineering & Earth Sciences, Notre Dame University, Notre Dame, Indiana, USA
| | - Mary Beth Wilhelm
- Space Science & Astrobiology Division, NASA Ames Research Center, Moffett Field, California, USA
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5
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Seaton KM, Pozarycki CI, Nuñez N, Stockton AM, The Oceans Across Space and
Time team. A Robust Capillary Electrophoresis with Laser-Induced Fluorescence Detection (CE-LIF) Method for Quantitative Compositional Analysis of Trace Amino Acids in Hypersaline Samples. ACS EARTH & SPACE CHEMISTRY 2023; 7:2214-2221. [PMID: 38026810 PMCID: PMC10658621 DOI: 10.1021/acsearthspacechem.3c00162] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/09/2023] [Revised: 09/20/2023] [Accepted: 09/28/2023] [Indexed: 12/01/2023]
Abstract
The search for life in our solar system can be enabled by the characterization of extreme environments representing conditions expected on other planets within our solar system. Molecular abundances observed in these environments help establish instrument design requirements, including limits of detection and pH/salt tolerance, and may be used for validation of proposed planetary science instrumentation. Here, we optimize capillary electrophoresis with laser-induced fluorescence detection (CE-LIF) separations for low limit of detection quantitative compositional analysis of amino acids in hypersaline samples using carboxyfluorescein succinimidyl ester (CFSE) as the amine-reactive fluorescent probe. Two methods were optimized for identification and quantification of proteinogenic amino acids, those with and those without acidic side chains, with limits of detection as low as 250 pM, improving on previous CFSE-amino acid CE-LIF methods by an order of magnitude. The resilience of the method to samples with high concentrations of Mg2+ (>4 M diluted to >0.4 M for analysis) is demonstrated on a sample collected from the salt harvesting facility South Bay Salt Works in San Diego, CA, demonstrating the highest Mg2+ tolerance for CE-LIF methods used in amino acid analyses to date. This advancement enables the rapid and robust analysis of trace amino acids and the search for biosignatures in hypersaline systems.
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Affiliation(s)
- K. Marshall Seaton
- School
of Chemistry & Biochemistry, Georgia
Institute of Technology, Atlanta, Georgia 30332, United States
| | - Chad I. Pozarycki
- School
of Chemistry & Biochemistry, Georgia
Institute of Technology, Atlanta, Georgia 30332, United States
| | - Nickie Nuñez
- School
of Chemistry & Biochemistry, Georgia
Institute of Technology, Atlanta, Georgia 30332, United States
| | - Amanda M. Stockton
- School
of Chemistry & Biochemistry, Georgia
Institute of Technology, Atlanta, Georgia 30332, United States
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6
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Moore B, Mahoney K, Zeng MF, Djuricanin P, Momose T. Ultraviolet Photodissociation of Proteinogenic Amino Acids. J Am Chem Soc 2023; 145:11045-11055. [PMID: 37167534 DOI: 10.1021/jacs.3c00124] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/13/2023]
Abstract
The ultraviolet photochemistry of the amino acids glycine, leucine, proline, and serine in their neutral forms was investigated using parahydrogen matrix-isolation spectroscopy. Irradiation by 213 nm light destroys the chirality of all three chiral amino acids as a result of the α-carbonyl C-C bond cleavage and hydrocarboxyl (HOCO) radical production. The temporal behavior of the Fourier-transform infrared spectra revealed that HOCO radicals rapidly reach a steady state, which occurs predominantly due to photodissociation of HOCO into CO + OH or CO2 + H. In glycine and leucine, the amine radicals generated by the α-carbonyl C-C bond cleavage rapidly undergo hydrogen elimination to yield methanimine and 3-methylbutane-1-imine, respectively. Breaking of the α-carbonyl C-C bond in proline appeared to yield 1-pyrroline, although due to its weak absorption it remains unconfirmed. In serine, additional products were formaldehyde and E/Z ethanimine. The present study shows that the direct production of HOCO previously observed in α-alanine generalizes to other amino acids of varying structure. It also revealed a tendency for amino acid photolysis to form imines rather than amine radicals. HOCO should be useful in the search for amino acids in interstellar space, particularly in combination with simple imine molecules.
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Affiliation(s)
- Brendan Moore
- Department of Chemistry, The University of British Columbia, 2036 Main Mall, Vancouver, British Columbia V6T 1Z1, Canada
| | - Kyle Mahoney
- Department of Chemistry, The University of British Columbia, 2036 Main Mall, Vancouver, British Columbia V6T 1Z1, Canada
| | - Mei Fei Zeng
- Department of Chemistry, The University of British Columbia, 2036 Main Mall, Vancouver, British Columbia V6T 1Z1, Canada
| | - Pavle Djuricanin
- Department of Chemistry, The University of British Columbia, 2036 Main Mall, Vancouver, British Columbia V6T 1Z1, Canada
| | - Takamasa Momose
- Department of Chemistry, The University of British Columbia, 2036 Main Mall, Vancouver, British Columbia V6T 1Z1, Canada
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7
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Cueto-Díaz EJ, Gálvez-Martínez S, Colin-García M, Mateo-Martí E. A New Approach in Prebiotic Chemistry Studies: Proline Sorption Triggered by Mineral Surfaces Analysed Using XPS. Life (Basel) 2023; 13:life13040908. [PMID: 37109437 PMCID: PMC10141706 DOI: 10.3390/life13040908] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2023] [Revised: 03/24/2023] [Accepted: 03/28/2023] [Indexed: 04/01/2023] Open
Abstract
The role of minerals in the origin of life and prebiotic evolution remains unknown and controversial. Mineral surfaces have the potential to facilitate prebiotic polymerization due to their ability to adsorb and concentrate biomolecules that subsequently can catalyse reactions; however, the precise nature of the interaction between the mineral host and the guest biomolecule still needs to be understood. In this context, we spectroscopically characterized, using infrared, X-ray photoemission spectroscopy (XPS) and X-ray diffraction (XRD) techniques, the interaction between L-proline and montmorillonite, olivine, iron disulphide, and haematite (minerals of prebiotic interest), by evaluating their interaction from a liquid medium. This work provides insight into the chemical processes occurring between proline, the only cyclic amino acid, and this selection of minerals, each of them bearing a particular chemical and crystal structures. Proline was successfully adsorbed on montmorillonite, haematite, olivine, and iron disulphide in anionic and zwitterionic chemical forms, being the predominant form directly related to the mineral structure and composition. Silicates (montmorillonite) dominate adsorption, whereas iron oxides (haematite) show the lowest molecular affinity. This approach will help to understand structure-affinity relationship between the mineral surfaces and proline, one of the nine amino acids generated in the Miller-Urey experiment.
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8
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Westall F, Brack A, Fairén AG, Schulte MD. Setting the geological scene for the origin of life and continuing open questions about its emergence. FRONTIERS IN ASTRONOMY AND SPACE SCIENCES 2023; 9:1095701. [PMID: 38274407 PMCID: PMC7615569 DOI: 10.3389/fspas.2022.1095701] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Indexed: 01/27/2024]
Abstract
The origin of life is one of the most fundamental questions of humanity. It has been and is still being addressed by a wide range of researchers from different fields, with different approaches and ideas as to how it came about. What is still incomplete is constrained information about the environment and the conditions reigning on the Hadean Earth, particularly on the inorganic ingredients available, and the stability and longevity of the various environments suggested as locations for the emergence of life, as well as on the kinetics and rates of the prebiotic steps leading to life. This contribution reviews our current understanding of the geological scene in which life originated on Earth, zooming in specifically on details regarding the environments and timescales available for prebiotic reactions, with the aim of providing experimenters with more specific constraints. Having set the scene, we evoke the still open questions about the origin of life: did life start organically or in mineralogical form? If organically, what was the origin of the organic constituents of life? What came first, metabolism or replication? What was the time-scale for the emergence of life? We conclude that the way forward for prebiotic chemistry is an approach merging geology and chemistry, i.e., far-from-equilibrium, wet-dry cycling (either subaerial exposure or dehydration through chelation to mineral surfaces) of organic reactions occurring repeatedly and iteratively at mineral surfaces under hydrothermal-like conditions.
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Affiliation(s)
| | - André Brack
- Centre de Biophysique Moléculaire, CNRS, Orléans, France
| | - Alberto G. Fairén
- Centro de Astrobiología (CAB, CSIC-INTA), Madrid, Spain
- Cornell University, Ithaca, NY, United States
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9
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A Closer Look at Non-random Patterns Within Chemistry Space for a Smaller, Earlier Amino Acid Alphabet. J Mol Evol 2022; 90:307-323. [PMID: 35666290 DOI: 10.1007/s00239-022-10061-5] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2021] [Accepted: 05/11/2022] [Indexed: 10/18/2022]
Abstract
Recent findings, in vitro and in silico, are strengthening the idea of a simpler, earlier stage of genetically encoded proteins which used amino acids produced by prebiotic chemistry. These findings motivate a re-examination of prior work which has identified unusual properties of the set of twenty amino acids found within the full genetic code, while leaving it unclear whether similar patterns also characterize the subset of prebiotically plausible amino acids. We have suggested previously that this ambiguity may result from the low number of amino acids recognized by the definition of prebiotic plausibility used for the analysis. Here, we test this hypothesis using significantly updated data for organic material detected within meteorites, which contain several coded and non-coded amino acids absent from prior studies. In addition to confirming the well-established idea that "late" arriving amino acids expanded the chemistry space encoded by genetic material, we find that a prebiotically plausible subset of coded amino acids generally emulates the patterns found in the full set of 20, namely an exceptionally broad and even distribution of volumes and an exceptionally even distribution of hydrophobicities (quantified as logP) over a narrow range. However, the strength of this pattern varies depending on both the size and composition the library used to create a background (null model) for a random alphabet, and the precise definition of exactly which amino acids were present in a simpler, earlier code. Findings support the idea that a small sample size of amino acids caused previous ambiguous results, and further improvements in meteorite analysis, and/or prebiotic simulations will further clarify the nature and extent of unusual properties. We discuss the case of sulfur-containing amino acids as a specific and clear example and conclude by reviewing the potential impact of better understanding the chemical "logic" of a smaller forerunner to the standard amino acid alphabet.
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10
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Chirality in Organic and Mineral Systems: A Review of Reactivity and Alteration Processes Relevant to Prebiotic Chemistry and Life Detection Missions. Symmetry (Basel) 2022. [DOI: 10.3390/sym14030460] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023] Open
Abstract
Chirality is a central feature in the evolution of biological systems, but the reason for biology’s strong preference for specific chiralities of amino acids, sugars, and other molecules remains a controversial and unanswered question in origins of life research. Biological polymers tend toward homochiral systems, which favor the incorporation of a single enantiomer (molecules with a specific chiral configuration) over the other. There have been numerous investigations into the processes that preferentially enrich one enantiomer to understand the evolution of an early, racemic, prebiotic organic world. Chirality can also be a property of minerals; their interaction with chiral organics is important for assessing how post-depositional alteration processes could affect the stereochemical configuration of simple and complex organic molecules. In this paper, we review the properties of organic compounds and minerals as well as the physical, chemical, and geological processes that affect organic and mineral chirality during the preservation and detection of organic compounds. We provide perspectives and discussions on the reactions and analytical techniques that can be performed in the laboratory, and comment on the state of knowledge of flight-capable technologies in current and future planetary missions, with a focus on organics analysis and life detection.
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11
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Kloprogge JT(T, Hartman H. Clays and the Origin of Life: The Experiments. Life (Basel) 2022; 12:259. [PMID: 35207546 PMCID: PMC8880559 DOI: 10.3390/life12020259] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2021] [Revised: 01/08/2022] [Accepted: 02/01/2022] [Indexed: 12/15/2022] Open
Abstract
There are three groups of scientists dominating the search for the origin of life: the organic chemists (the Soup), the molecular biologists (RNA world), and the inorganic chemists (metabolism and transient-state metal ions), all of which have experimental adjuncts. It is time for Clays and the Origin of Life to have its experimental adjunct. The clay data coming from Mars and carbonaceous chondrites have necessitated a review of the role that clays played in the origin of life on Earth. The data from Mars have suggested that Fe-clays such as nontronite, ferrous saponites, and several other clays were formed on early Mars when it had sufficient water. This raised the question of the possible role that these clays may have played in the origin of life on Mars. This has put clays front and center in the studies on the origin of life not only on Mars but also here on Earth. One of the major questions is: What was the catalytic role of Fe-clays in the origin and development of metabolism here on Earth? First, there is the recent finding of a chiral amino acid (isovaline) that formed on the surface of a clay mineral on several carbonaceous chondrites. This points to the formation of amino acids on the surface of clay minerals on carbonaceous chondrites from simpler molecules, e.g., CO2, NH3, and HCN. Additionally, there is the catalytic role of small organic molecules, such as dicarboxylic acids and amino acids found on carbonaceous chondrites, in the formation of Fe-clays themselves. Amino acids and nucleotides adsorb on clay surfaces on Earth and subsequently polymerize. All of these observations and more must be subjected to strict experimental analysis. This review provides an overview of what has happened and is now happening in the experimental clay world related to the origin of life. The emphasis is on smectite-group clay minerals, such as montmorillonite and nontronite.
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Affiliation(s)
- Jacob Teunis (Theo) Kloprogge
- School of Earth and Environmental Sciences, The University of Queensland, Brisbane, QLD 4072, Australia
- Department of Chemistry, College of Arts and Sciences, University of the Philippines Visayas, Miagao 5023, Philippines
| | - Hyman Hartman
- Department of Earth Atmospheric and Planetary Sciences, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA 02139, USA
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12
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Fried SD, Fujishima K, Makarov M, Cherepashuk I, Hlouchova K. Peptides before and during the nucleotide world: an origins story emphasizing cooperation between proteins and nucleic acids. J R Soc Interface 2022; 19:20210641. [PMID: 35135297 PMCID: PMC8833103 DOI: 10.1098/rsif.2021.0641] [Citation(s) in RCA: 34] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2021] [Accepted: 01/05/2022] [Indexed: 12/14/2022] Open
Abstract
Recent developments in Origins of Life research have focused on substantiating the narrative of an abiotic emergence of nucleic acids from organic molecules of low molecular weight, a paradigm that typically sidelines the roles of peptides. Nevertheless, the simple synthesis of amino acids, the facile nature of their activation and condensation, their ability to recognize metals and cofactors and their remarkable capacity to self-assemble make peptides (and their analogues) favourable candidates for one of the earliest functional polymers. In this mini-review, we explore the ramifications of this hypothesis. Diverse lines of research in molecular biology, bioinformatics, geochemistry, biophysics and astrobiology provide clues about the progression and early evolution of proteins, and lend credence to the idea that early peptides served many central prebiotic roles before they were encodable by a polynucleotide template, in a putative 'peptide-polynucleotide stage'. For example, early peptides and mini-proteins could have served as catalysts, compartments and structural hubs. In sum, we shed light on the role of early peptides and small proteins before and during the nucleotide world, in which nascent life fully grasped the potential of primordial proteins, and which has left an imprint on the idiosyncratic properties of extant proteins.
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Affiliation(s)
- Stephen D. Fried
- Department of Chemistry, Johns Hopkins University, Baltimore, MD 21212, USA
- Department of Biophysics, Johns Hopkins University, Baltimore, MD 21212, USA
| | - Kosuke Fujishima
- Earth-Life Science Institute, Tokyo Institute of Technology, Tokyo 1528550, Japan
- Graduate School of Media and Governance, Keio University, Fujisawa 2520882, Japan
| | - Mikhail Makarov
- Department of Cell Biology, Faculty of Science, Charles University, BIOCEV, Prague 12800, Czech Republic
| | - Ivan Cherepashuk
- Department of Cell Biology, Faculty of Science, Charles University, BIOCEV, Prague 12800, Czech Republic
| | - Klara Hlouchova
- Department of Cell Biology, Faculty of Science, Charles University, BIOCEV, Prague 12800, Czech Republic
- Institute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, Prague 16610, Czech Republic
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13
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From amino acid mixtures to peptides in liquid sulphur dioxide on early Earth. Nat Commun 2021; 12:7182. [PMID: 34893619 PMCID: PMC8664857 DOI: 10.1038/s41467-021-27527-7] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2021] [Accepted: 11/18/2021] [Indexed: 01/01/2023] Open
Abstract
The formation of peptide bonds is one of the most important biochemical reaction steps. Without the development of structurally and catalytically active polymers, there would be no life on our planet. However, the formation of large, complex oligomer systems is prevented by the high thermodynamic barrier of peptide condensation in aqueous solution. Liquid sulphur dioxide proves to be a superior alternative for copper-catalyzed peptide condensations. Compared to water, amino acids are activated in sulphur dioxide, leading to the incorporation of all 20 proteinogenic amino acids into proteins. Strikingly, even extremely low initial reactant concentrations of only 50 mM are sufficient for extensive peptide formation, yielding up to 2.9% of dialanine in 7 days. The reactions carried out at room temperature and the successful use of the Hadean mineral covellite (CuS) as a catalyst, suggest a volcanic environment for the formation of the peptide world on early Earth. Peptide bond formation is one of the key biochemical reactions needed for the formation of life, but is thermodynamically unfavoured in water. Here, the authors report on the possibility of complex oligomer formation in liquid sulphur dioxide which may have existed on early Earth at the emergence of life.
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14
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Vincent L, Colón-Santos S, Cleaves HJ, Baum DA, Maurer SE. The Prebiotic Kitchen: A Guide to Composing Prebiotic Soup Recipes to Test Origins of Life Hypotheses. Life (Basel) 2021; 11:life11111221. [PMID: 34833097 PMCID: PMC8618940 DOI: 10.3390/life11111221] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2021] [Revised: 10/14/2021] [Accepted: 10/30/2021] [Indexed: 01/20/2023] Open
Abstract
“Prebiotic soup” often features in discussions of origins of life research, both as a theoretical concept when discussing abiological pathways to modern biochemical building blocks and, more recently, as a feedstock in prebiotic chemistry experiments focused on discovering emergent, systems-level processes such as polymerization, encapsulation, and evolution. However, until now, little systematic analysis has gone into the design of well-justified prebiotic mixtures, which are needed to facilitate experimental replicability and comparison among researchers. This paper explores principles that should be considered in choosing chemical mixtures for prebiotic chemistry experiments by reviewing the natural environmental conditions that might have created such mixtures and then suggests reasonable guidelines for designing recipes. We discuss both “assembled” mixtures, which are made by mixing reagent grade chemicals, and “synthesized” mixtures, which are generated directly from diversity-generating primary prebiotic syntheses. We discuss different practical concerns including how to navigate the tremendous uncertainty in the chemistry of the early Earth and how to balance the desire for using prebiotically realistic mixtures with experimental tractability and replicability. Examples of two assembled mixtures, one based on materials likely delivered by carbonaceous meteorites and one based on spark discharge synthesis, are presented to illustrate these challenges. We explore alternative procedures for making synthesized mixtures using recursive chemical reaction systems whose outputs attempt to mimic atmospheric and geochemical synthesis. Other experimental conditions such as pH and ionic strength are also considered. We argue that developing a handful of standardized prebiotic recipes may facilitate coordination among researchers and enable the identification of the most promising mechanisms by which complex prebiotic mixtures were “tamed” during the origin of life to give rise to key living processes such as self-propagation, information processing, and adaptive evolution. We end by advocating for the development of a public prebiotic chemistry database containing experimental methods (including soup recipes), results, and analytical pipelines for analyzing complex prebiotic mixtures.
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Affiliation(s)
- Lena Vincent
- Wisconsin Institute for Discovery, University of Wisconsin-Madison, Madison, WI 53715, USA; (L.V.); (S.C.-S.)
| | - Stephanie Colón-Santos
- Wisconsin Institute for Discovery, University of Wisconsin-Madison, Madison, WI 53715, USA; (L.V.); (S.C.-S.)
| | - H. James Cleaves
- Earth and Planets Laboratory, The Carnegie Institution for Science, Washington, DC 20015, USA;
- Earth-Life Science Institute, Tokyo Institute of Technology, Ookayama, Meguro-ku, Tokyo 152-8550, Japan
- Blue Marble Space Institute for Science, Seattle, WA 97154, USA
| | - David A. Baum
- Wisconsin Institute for Discovery, University of Wisconsin-Madison, Madison, WI 53715, USA; (L.V.); (S.C.-S.)
- Department of Botany, University of Wisconsin-Madison, Madison, WI 53705, USA
- Correspondence: (D.A.B.); (S.E.M.)
| | - Sarah E. Maurer
- Department of Chemistry and Biochemistry, Central Connecticut State University, New Britain, CT 06050, USA
- Correspondence: (D.A.B.); (S.E.M.)
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15
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Lymer EA, Konstantinidis M, Lalla EA, Daly MG, Tait KT. UV Time-Resolved Laser-Induced Fluorescence Spectroscopy of Amino Acids Found in Meteorites: Implications for Space Science and Exploration. ASTROBIOLOGY 2021; 21:1350-1362. [PMID: 34314603 DOI: 10.1089/ast.2021.0006] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
Laser-induced fluorescence spectroscopy is a useful laboratory and in situ technique for planetary exploration, with applications in biosignature detection and the search for life on Mars. However, little work has been completed on the utility of fluorescence spectroscopy techniques on asteroid relevant material. In preparation for asteroid sample return missions such as NASA's OSIRIS-REx and JAXA's Hayabusa2, we conducted UV time resolved laser-induced fluorescence spectroscopy (TR-LIF) analysis of 10 amino acids, all of which have been found in the carbonaceous meteorites Murchison and Allende. We present the calculation of decay rates of each amino acid (1.55-3.56 ns) and compare with those of relevant homogeneous minerals (15-70 ns). Moreover, we demonstrate a linear relationship between calculated lifetimes and elemental abundance of nitrogen and carbon (p < 0.025). The quantitative and qualitative fluorescence analyses presented in this work will lead to more reliable identification of organic material within meteorites and asteroids in a time-efficient, minimally destructive way.
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Affiliation(s)
- Elizabeth A Lymer
- Centre for Research in Earth and Space Science, York University, Toronto, Canada
| | - Menelaos Konstantinidis
- Centre for Research in Earth and Space Science, York University, Toronto, Canada
- Dalla Lana School of Public Health, University of Toronto, Toronto, Canada
| | - Emmanuel A Lalla
- Centre for Research in Earth and Space Science, York University, Toronto, Canada
| | - Michael G Daly
- Centre for Research in Earth and Space Science, York University, Toronto, Canada
| | - Kimberly T Tait
- Department of Natural History, Centre for Applied Planetary Mineralogy, Royal Ontario Museum, Toronto, Canada
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16
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Chance and Necessity in the Evolution of Matter to Life: A Comprehensive Hypothesis. Symmetry (Basel) 2021. [DOI: 10.3390/sym13101918] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022] Open
Abstract
Specialists in several branches of life sciences are trying to solve, piece by piece, the immensely complex puzzle of the origin of life. Some parts of the puzzle seem to appear with a rather high degree of clarity, while others remain totally obscure. We cannot be sure that life emerged only on our Earth, but we believe that the presence of large amounts of water in its liquid state is absolutely essential for the emergence and evolution of living matter. We can also assume that the latter exploits everywhere the same light elements, mainly C, H, O, N, S, and P, and somehow manipulates the same simple monomeric and polymeric organic compounds, such as alpha-amino acids, carbohydrates, nucleic bases, and surface-active carboxylic acids. The author contributes to the field by stating that all fundamental particles of our matter are “homochiral” and predominantly produce in an absolute asymmetric synthesis amino acids of L-configuration and carbohydrates of D-series. Another important point is that free atmospheric oxygen mainly stems from the photolysis of water molecules by cosmic irradiation and is not necessarily bound to living organisms on the planet.
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17
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Kleimeier NF, Eckhardt AK, Kaiser RI. Identification of Glycolaldehyde Enol (HOHC═CHOH) in Interstellar Analogue Ices. J Am Chem Soc 2021; 143:14009-14018. [PMID: 34407613 DOI: 10.1021/jacs.1c07978] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
Glycolaldehyde is considered the entry point in the aqueous prebiotic formose (Butlerow) reaction although it mainly exists in its unreactive hydrated form in aqueous solution. The characterization of the more reactive nucleophilic enol form under interstellar conditions has remained elusive to date. Here we report on the identification of glycolaldehyde enol (1,2-ethenediol, HOHC═CHOH) in low temperature methanol-bearing ices at temperatures as low as 5 K. Exploiting isotope labeling and isomer-selective photoionization coupled with reflectron time-of-flight mass spectrometry, our results unravel distinct reaction pathways to 1,2-ethenediol, thus demonstrating the kinetic stability, availability for prebiotic sugar formation, and potential detectability in deep space.
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Affiliation(s)
- N Fabian Kleimeier
- Department of Chemistry, University of Hawaii at Ma̅noa, Honolulu, Hawaii 96822, United States.,W. M. Keck Laboratory in Astrochemistry, University of Hawaii at Ma̅noa, Honolulu, Hawaii 96822, United States
| | - André K Eckhardt
- Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
| | - Ralf I Kaiser
- Department of Chemistry, University of Hawaii at Ma̅noa, Honolulu, Hawaii 96822, United States.,W. M. Keck Laboratory in Astrochemistry, University of Hawaii at Ma̅noa, Honolulu, Hawaii 96822, United States
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18
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Bocková J, Jones NC, Meierhenrich UJ, Hoffmann SV, Meinert C. Chiroptical activity of hydroxycarboxylic acids with implications for the origin of biological homochirality. Commun Chem 2021; 4:86. [PMID: 36697718 PMCID: PMC9814692 DOI: 10.1038/s42004-021-00524-z] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2021] [Accepted: 05/14/2021] [Indexed: 02/05/2023] Open
Abstract
Circularly polarised light (CPL) interacting with interstellar organic molecules might have imparted chiral bias and hence preluded prebiotic evolution of biomolecular homochirality. The L-enrichment of extra-terrestrial amino acids in meteorites, as opposed to no detectable excess in monocarboxylic acids and amines, has previously been attributed to their intrinsic interaction with stellar CPL revealed by substantial differences in their chiroptical signals. Recent analyses of meteoritic hydroxycarboxylic acids (HCAs) - potential co-building blocks of ancestral proto-peptides - indicated a chiral bias toward the L-enantiomer of lactic acid. Here we report on novel anisotropy spectra of several HCAs using a synchrotron radiation electronic circular dichroism spectrophotometer to support the re-evaluation of chiral biomarkers of extra-terrestrial origin in the context of absolute photochirogenesis. We found that irradiation by CPL which would yield L-excess in amino acids would also yield L-excess in aliphatic chain HCAs, including lactic acid and mandelic acid, in the examined conditions. Only tartaric acid would show "unnatural" D-enrichment, which makes it a suitable target compound for further assessing the relevance of the CPL scenario.
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Affiliation(s)
- Jana Bocková
- University Côte d'Azur, CNRS, Institute de Chimie de Nice, UMR 7272, Nice, France.
| | - Nykola C Jones
- ISA, Department of Physics and Astronomy, Aarhus University, Aarhus C, Denmark
| | - Uwe J Meierhenrich
- University Côte d'Azur, CNRS, Institute de Chimie de Nice, UMR 7272, Nice, France
| | - Søren V Hoffmann
- ISA, Department of Physics and Astronomy, Aarhus University, Aarhus C, Denmark
| | - Cornelia Meinert
- University Côte d'Azur, CNRS, Institute de Chimie de Nice, UMR 7272, Nice, France.
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19
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Gómez de Castro AI, De Isidro-Gómez AI. Constraints for Use of Ultraviolet Spectropolarimetry to Detect Chiral Amino Acids from Comets. ASTROBIOLOGY 2021; 21:718-728. [PMID: 33798393 PMCID: PMC8219194 DOI: 10.1089/ast.2020.2310] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/02/2020] [Accepted: 02/01/2021] [Indexed: 06/12/2023]
Abstract
Life is pervasive on planet Earth, but whether life is ubiquitous in the Galaxy and sustainable over timescales comparable to stellar evolution is unknown. Evidence suggests that life first appeared on Earth more than 3.77 Gyr ago, during a period of heavy meteoric bombardment. Amino acids, the building blocks of proteins, have been demonstrated to exist in interstellar ice. As such, the contribution of space-generated amino acids to those existing on Earth should be considered. However, detection of space amino acids is challenging. In this study, we used analytical data from several meteorites and in situ measurements of the comet 67P/Churyumov-Gerasimenko collected by the Rosetta probe to evaluate the detectability of alanine by ultraviolet spectropolarimetry. Alanine is the second-most abundant amino acid after glycine and is optically active. This chirality produces a unique signature that enables reliable identification of this amino acid using the imprint of optical rotatory dispersion (ORD) and circular dichroism (CD) in the ultraviolet spectrum (130-230 nm). Here, we show that the ORD signature could be detected in comets by using ultraviolet spectropolarimetric observations conducted at middle size space observatories. These observations can also provide crucial information for the study of sources of enantiomeric imbalance on Earth.
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20
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d'Ischia M, Manini P, Martins Z, Remusat L, O'D Alexander CM, Puzzarini C, Barone V, Saladino R. Insoluble organic matter in chondrites: Archetypal melanin-like PAH-based multifunctionality at the origin of life? Phys Life Rev 2021; 37:65-93. [PMID: 33774429 DOI: 10.1016/j.plrev.2021.03.002] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2021] [Accepted: 03/12/2021] [Indexed: 12/11/2022]
Abstract
An interdisciplinary review of the chemical literature that points to a unifying scenario for the origin of life, referred to as the Primordial Multifunctional organic Entity (PriME) scenario, is provided herein. In the PriME scenario it is suggested that the Insoluble Organic Matter (IOM) in carbonaceous chondrites, as well as interplanetary dust particles from meteorites and comets may have played an important role in the three most critical processes involved in the origin of life, namely 1) metabolism, via a) the provision and accumulation of molecules that are the building blocks of life, b) catalysis (e.g., by templation), and c) protection of developing life molecules against radiation by excited state deactivation; 2) compartmentalization, via adsorption of compounds on the exposed organic surfaces in fractured meteorites, and 3) replication, via deaggregation, desorption and related physical phenomena. This scenario is based on the hitherto overlooked structural and physicochemical similarities between the IOM and the dark, insoluble, multifunctional melanin polymers found in bacteria and fungi and associated with the ability of these microorganisms to survive extreme conditions, including ionizing radiation. The underlying conceptual link between these two materials is strengthened by the fact that primary precursors of bacterial and fungal melanins (collectively referred to herein as allomelanins) are hydroxylated aromatic compounds like homogentisic acid and 1,8-dihydroxynaphthalene, and that similar hydroxylated aromatic compounds, including hydroxynaphthalenes, figure prominently among possible components of the organic materials on dust grains and ices in the interstellar matter, and may be involved in the formation of IOM in meteorites. Inspired by this rationale, a vis-à-vis review of the properties of IOM from various chondrites and non-nitrogenous allomelanin pigments from bacteria and fungi is provided herein. The unrecognized similarities between these materials may pave the way for a novel scenario at the origin of life, in which IOM-related complex organic polymers delivered to the early Earth are proposed to serve as PriME and were preserved and transformed in those primitive forms of life that shared the ability to synthesize melanin polymers playing an important role in the critical processes underlying the establishment of terrestrial eukaryotes.
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Affiliation(s)
- Marco d'Ischia
- Department of Chemical Sciences, University of Naples Federico II, Via Cintia 4, 80126 Naples, Italy.
| | - Paola Manini
- Department of Chemical Sciences, University of Naples Federico II, Via Cintia 4, 80126 Naples, Italy
| | - Zita Martins
- Centro de Química Estrutural and Departamento de Engenharia Química, Instituto Superior Técnico, Universidade de Lisboa, Av. Rovisco Pais 1, 1049-001 Lisboa, Portugal
| | - Laurent Remusat
- Institut de minéralogie, de physique des matériaux et de cosmochimie, UMR CNRS 7590, Sorbonne Université, Muséum National d'Histoire Naturelle, 61 rue Buffon, 75005 Paris, France
| | - Conel M O'D Alexander
- Earth and Planets Laboratory, Carnegie Institution for Science, 5241 Broad Branch Road, NW Washington, DC 20015-1305, USA
| | - Cristina Puzzarini
- Department of Chemistry "Giacomo Ciamician", University of Bologna, Via F. Selmi 2, Bologna, I-40126, Italy
| | - Vincenzo Barone
- Scuola Normale Superiore, Piazza dei Cavalieri 7, Pisa, I-56126, Italy
| | - Raffaele Saladino
- Biological and Ecological Sciences Department (DEB), University of Tuscia, Via S. Camillo de Lellis 01100 Viterbo, Italy
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21
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Mayer-Bacon C, Freeland SJ. A broader context for understanding amino acid alphabet optimality. J Theor Biol 2021; 520:110661. [PMID: 33684404 DOI: 10.1016/j.jtbi.2021.110661] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2020] [Revised: 02/23/2021] [Accepted: 02/25/2021] [Indexed: 12/21/2022]
Abstract
A series of prior publications has reported unusual properties of the set of genetically encoded amino acids shared by all known life. This work uses quantitative measures (descriptors) of size, charge and hydrophobicity to compare the distribution of the genetically encoded amino acids with random samples of plausible alternatives. Results show that the standard "alphabet" of amino acids established by the time of LUCA is distributed with unusual evenness over a broad range for the three, key physicochemical properties. However, different publications have used slightly different assumptions, including variations in the precise descriptors used, the set of plausible alternative molecules considered, and the format in which results have been presented. Here we consolidate these findings into a unified framework in order to clarify unusual features. We find that in general, the remarkable features of the full set of 20 genetically encoded amino acids are robust when compared with random samples drawn from a densely populated picture of plausible, alternative L-α-amino acids. In particular, the genetically encoded set is distributed across an exceptionally broad range of volumes, and distributed exceptionally evenly within a modest range of hydrophobicities. Surprisingly, range and evenness of charge (pKa) is exceptional only for the full amino acid structures, not for their sidechains - a result inconsistent with prior interpretations involving the role that amino acid sidechains play within protein sequences. In stark contrast, these remarkable features are far less clear when the prebiotically plausible subset of genetically encoded amino acids is compared with a much smaller pool of prebiotically plausible alternatives. By considering the nature of the "optimality theory" approach taken to derive these and prior insights, we suggest productive avenues for further research.
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Affiliation(s)
- Christopher Mayer-Bacon
- Department of Biological Sciences, University of Maryland, Baltimore County, 1000 Hilltop Circle, Baltimore, MD 25250, USA.
| | - Stephen J Freeland
- Department of Biological Sciences, University of Maryland, Baltimore County, 1000 Hilltop Circle, Baltimore, MD 25250, USA
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22
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A Few Experimental Suggestions Using Minerals to Obtain Peptides with a High Concentration of L-Amino Acids and Protein Amino Acids. Symmetry (Basel) 2020. [DOI: 10.3390/sym12122046] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022] Open
Abstract
The peptides/proteins of all living beings on our planet are mostly made up of 19 L-amino acids and glycine, an achiral amino acid. Arising from endogenous and exogenous sources, the seas of the prebiotic Earth could have contained a huge diversity of biomolecules (including amino acids), and precursors of biomolecules. Thus, how were these amino acids selected from the huge number of available amino acids and other molecules? What were the peptides of prebiotic Earth made up of? How were these peptides synthesized? Minerals have been considered for this task, since they can preconcentrate amino acids from dilute solutions, catalyze their polymerization, and even make the chiral selection of them. However, until now, this problem has only been studied in compartmentalized experiments. There are separate experiments showing that minerals preconcentrate amino acids by adsorption or catalyze their polymerization, or separate L-amino acids from D-amino acids. Based on the [GADV]-protein world hypothesis, as well as the relative abundance of amino acids on prebiotic Earth obtained by Zaia, several experiments are suggested. The main goal of these experiments is to show that using minerals it is possible, at least, to obtain peptides whose composition includes a high quantity of L-amino acids and protein amino acids (PAAs). These experiments should be performed using hydrothermal environments and wet/dry cycles. In addition, for hydrothermal environment experiments, it is very important to use one of the suggested artificial seawaters, and for wet/dry environments, it is important to perform the experiments in distilled water and diluted salt solutions. Finally, from these experiments, we suggest that, without an RNA world or even a pre genetic world, a small peptide set could emerge that better resembles modern proteins.
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23
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Zellner NEB, McCaffrey VP, Butler JHE. Cometary Glycolaldehyde as a Source of pre-RNA Molecules. ASTROBIOLOGY 2020; 20:1377-1388. [PMID: 32985898 DOI: 10.1089/ast.2020.2216] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Over 200 molecules have been detected in multiple extraterrestrial environments, including glycolaldehyde (C2(H2O)2, GLA), a two-carbon sugar precursor that has been detected in regions of the interstellar medium. Its recent in situ detection on the nucleus of comet 67P/Churyumov-Gerasimenko and through remote observations in the comae of others provides tantalizing evidence that it is common on most (if not all) comets. Impact experiments conducted at the Experimental Impact Laboratory at NASA's Johnson Space Center have shown that samples of GLA and GLA mixed with montmorillonite clays can survive impact delivery in the pressure range of 4.5 to 25 GPa. Extrapolated to amounts of GLA observed on individual comets and assuming a monotonic impact rate in the first billion years of Solar System history, these experimental results show that up to 1023 kg of cometary GLA could have survived impact delivery, with substantial amounts of threose, erythrose, glycolic acid, and ethylene glycol also produced or delivered. Importantly, independent of the profile of the impact flux in the early Solar System, comet delivery of GLA would have provided (and may continue to provide) a reservoir of starting material for the formose reaction (to form ribose) and the Strecker reaction (to form amino acids). Thus, comets may have been important delivery vehicles for starting molecules necessary for life as we know it.
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Affiliation(s)
| | | | - Jayden H E Butler
- Department of Physics, Albion College, Albion, Michigan, USA
- Department of Physics, California State University - Los Angeles, Los Angeles, California, USA
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24
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Aponte JC, Elsila JE, Hein JE, Dworkin JP, Glavin DP, McLain HL, Parker ET, Cao T, Berger EL, Burton AS. Analysis of amino acids, hydroxy acids, and amines in CR chondrites. METEORITICS & PLANETARY SCIENCE 2020; 55:2422-2439. [PMID: 33536738 PMCID: PMC7839561 DOI: 10.1111/maps.13586] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/15/2020] [Accepted: 09/23/2020] [Indexed: 05/20/2023]
Abstract
The abundances, relative distributions, and enantiomeric and isotopic compositions of amines, amino acids, and hydroxy acids in Miller Range (MIL) 090001 and MIL 090657 meteorites were determined. Chiral distributions and isotopic compositions confirmed that most of the compounds detected were indigenous to the meteorites and not the result of terrestrial contamination. Combined with data in the literature, suites of these compounds have now been analyzed in a set of six CR chondrites, spanning aqueous alteration types 2.0-2.8. Amino acid abundances ranged from 17 to 3300 nmol g-1 across the six CRs; hydroxy acid abundances ranged from 180 to 1800 nmol g-1; and amine abundances ranged from 40 to 2100 nmol g-1. For amino acids and amines, the weakly altered chondrites contained the highest abundances, whereas hydroxy acids were most abundant in the more altered CR2.0 chondrite. Because water contents in the meteorites are orders of magnitude greater than soluble organics, synthesis of hydroxy acids, which requires water, may be less affected by aqueous alteration than amines and amino acids that require nitrogen-bearing precursors. Two chiral amino acids that were plausibly extraterrestrial in origin were present with slight enantiomeric excesses: L-isovaline (~10% excess) and D-β-amino-n-butyric acid (~9% excess); further studies are needed to verify that the chiral excess in the latter compound is truly extraterrestrial in origin. The isotopic compositions of compounds reported here did not reveal definitive links between the different compound classes such as common synthetic precursors, but will provide a framework for further future in-depth analyses.
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Affiliation(s)
- José C. Aponte
- Department of ChemistryCatholic University of AmericaWashingtonDistrict of Columbia20064USA
- Solar System Exploration DivisionNASA Goddard Space Flight CenterGreenbeltMaryland20771USA
| | - Jamie E. Elsila
- Solar System Exploration DivisionNASA Goddard Space Flight CenterGreenbeltMaryland20771USA
| | - Jason E. Hein
- University of British ColumbiaBritish ColumbiaV6T 1Z2Canada
| | - Jason P. Dworkin
- Solar System Exploration DivisionNASA Goddard Space Flight CenterGreenbeltMaryland20771USA
| | - Daniel P. Glavin
- Solar System Exploration DivisionNASA Goddard Space Flight CenterGreenbeltMaryland20771USA
| | - Hannah L. McLain
- Department of ChemistryCatholic University of AmericaWashingtonDistrict of Columbia20064USA
- Solar System Exploration DivisionNASA Goddard Space Flight CenterGreenbeltMaryland20771USA
| | - Eric T. Parker
- Solar System Exploration DivisionNASA Goddard Space Flight CenterGreenbeltMaryland20771USA
| | - Timothy Cao
- Department of ChemistryUniversity of CaliforniaMercedCalifornia95343USA
| | - Eve L. Berger
- Astromaterials Research and Exploration Science DivisionTexas State University / Jacobs JETS ContractNASA Johnson Space CenterHoustonTexas77058USA
| | - Aaron S. Burton
- Astromaterials Research and Exploration Science DivisionNASA Johnson Space CenterHoustonTexas77058USA
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25
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Klenner F, Postberg F, Hillier J, Khawaja N, Cable ML, Abel B, Kempf S, Glein CR, Lunine JI, Hodyss R, Reviol R, Stolz F. Discriminating Abiotic and Biotic Fingerprints of Amino Acids and Fatty Acids in Ice Grains Relevant to Ocean Worlds. ASTROBIOLOGY 2020; 20:1168-1184. [PMID: 32493049 DOI: 10.1089/ast.2019.2188] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Identifying and distinguishing between abiotic and biotic signatures of organic molecules such as amino acids and fatty acids is key to the search for life on extraterrestrial ocean worlds. Impact ionization mass spectrometers can potentially achieve this by sampling water ice grains formed from ocean water and ejected by moons such as Enceladus and Europa, thereby exploring the habitability of their subsurface oceans in spacecraft flybys. Here, we extend previous high-sensitivity laser-based analog experiments of biomolecules in pure water to investigate the mass spectra of amino acids and fatty acids at simulated abiotic and biotic relative abundances. To account for the complex background matrix expected to emerge from a salty Enceladean ocean that has been in extensive chemical exchange with a carbonaceous rocky core, other organic and inorganic constituents are added to the biosignature mixtures. We find that both amino acids and fatty acids produce sodiated molecular peaks in salty solutions. Under the soft ionization conditions expected for low-velocity (2-6 km/s) encounters of an orbiting spacecraft with ice grains, the unfragmented molecular spectral signatures of amino acids and fatty acids accurately reflect the original relative abundances of the parent molecules within the source solution, enabling characteristic abiotic and biotic relative abundance patterns to be identified. No critical interferences with other abiotic organic compounds were observed. Detection limits of the investigated biosignatures under Enceladus-like conditions are salinity dependent (decreasing sensitivity with increasing salinity), at the μM or nM level. The survivability and ionization efficiency of large organic molecules during impact ionization appear to be significantly improved when they are protected by a frozen water matrix. We infer from our experimental results that encounter velocities of 4-6 km/s are most appropriate for impact ionization mass spectrometers to detect and discriminate between abiotic and biotic signatures.
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Affiliation(s)
- Fabian Klenner
- Institute of Geological Sciences, Freie Universität Berlin, Berlin, Germany
- Institute of Earth Sciences, Ruprecht-Karls-Universität Heidelberg, Heidelberg, Germany
| | - Frank Postberg
- Institute of Geological Sciences, Freie Universität Berlin, Berlin, Germany
- Institute of Earth Sciences, Ruprecht-Karls-Universität Heidelberg, Heidelberg, Germany
| | - Jon Hillier
- Institute of Geological Sciences, Freie Universität Berlin, Berlin, Germany
| | - Nozair Khawaja
- Institute of Geological Sciences, Freie Universität Berlin, Berlin, Germany
- Institute of Earth Sciences, Ruprecht-Karls-Universität Heidelberg, Heidelberg, Germany
| | - Morgan L Cable
- NASA Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California, USA
| | - Bernd Abel
- Leibniz-Institute of Surface Engineering, Leipzig, Germany
- Wilhelm-Ostwald-Institute for Physical and Theoretical Chemistry, Universität Leipzig, Leipzig, Germany
| | - Sascha Kempf
- Laboratory for Atmospheric and Space Physics, University of Colorado, Boulder, Colorado, USA
| | - Christopher R Glein
- Space Science and Engineering Division, Southwest Research Institute, San Antonio, Texas, USA
| | - Jonathan I Lunine
- NASA Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California, USA
- Department of Astronomy and Carl Sagan Institute, Cornell University, Ithaca, New York, USA
| | - Robert Hodyss
- NASA Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California, USA
| | - René Reviol
- Institute of Geological Sciences, Freie Universität Berlin, Berlin, Germany
- Institute of Earth Sciences, Ruprecht-Karls-Universität Heidelberg, Heidelberg, Germany
| | - Ferdinand Stolz
- Leibniz-Institute of Surface Engineering, Leipzig, Germany
- Wilhelm-Ostwald-Institute for Physical and Theoretical Chemistry, Universität Leipzig, Leipzig, Germany
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26
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Pohorille A, Sokolowska J. Evaluating Biosignatures for Life Detection. ASTROBIOLOGY 2020; 20:1236-1250. [PMID: 32808814 PMCID: PMC7591378 DOI: 10.1089/ast.2019.2151] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/31/2019] [Accepted: 06/24/2020] [Indexed: 06/11/2023]
Abstract
Conceptual frameworks are developed for evaluating the ability of different biosignatures to provide evidence for the presence of life in planned missions or observational studies. The focus is on intrinsic characteristics of biosignatures in space environments rather than on their detection, which depends on technology. Evaluation procedures are drawn from extensive studies in decision theory on related problems in business, engineering, medical fields, and the social arena. Three approaches are particularly useful. Two of them, Signal Detection Theory and Bayesian hypothesis testing, are based on probabilities. The third approach is based on utility theory. In all the frameworks, knowledge about a subject matter has to be translated into probabilities and/or utilities in a multistep process called elicitation. We present the first attempt to cover all steps, from acquiring knowledge about biosignatures to assigning probabilities or utilities to global quantities, such as false positives and false negatives. Since elicitation involves human judgment that is always prone to perceptual and cognitive biases, the relevant biases are discussed and illustrated in examples. We further discuss at which stage of elicitation human judgment should be involved to ensure the most reliable outcomes. An example, how evaluating biosignatures might be implemented, is given in the Supplementary Information.
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Affiliation(s)
- Andrew Pohorille
- Exobiology Branch, NASA Ames Research Center, Moffett Field, California, USA
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27
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Magnetic circular dichroism in Archean atmosphere and asymmetric photolysis of biomolecules: enantiomeric excess of prebiotic sugar. J Biol Phys 2020; 46:283-295. [PMID: 32617795 DOI: 10.1007/s10867-020-09552-7] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2020] [Accepted: 06/21/2020] [Indexed: 10/23/2022] Open
Abstract
In the terrestrial dipolar magnetic field, magnetic circular dichroism (MCD) of UV sunlight by paramagnetic O2 in an Archean atmosphere (mostly CO2 and N2) results in circular polarization anisotropy (~ 10-10). This is used to calculate enantiomeric excess (EE~10-13) of glyceraldehyde (3-carbon sugar) with a model that includes racemic production and asymmetric photolysis of its enantiomers. The sign and magnitude of enantiomeric excess (EE) vary with the Earth's latitude. Unlike random noise fluctuation in spontaneous mirror symmetry breaking (SMSB) models, the sign of EE is deterministic and constant over large areas of prebiotic Earth. The magnitude is several orders greater than the mean amplitude of stochastically fluctuating EE. MCD could provide the initial EE for growth of homochirality by asymmetric autocatalysis.
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28
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Chan QHS, Stroud R, Martins Z, Yabuta H. Concerns of Organic Contamination for Sample Return Space Missions. SPACE SCIENCE REVIEWS 2020; 216:56. [PMID: 32624626 PMCID: PMC7319412 DOI: 10.1007/s11214-020-00678-7] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/27/2019] [Accepted: 04/23/2020] [Indexed: 06/11/2023]
Abstract
Analysis of organic matter has been one of the major motivations behind solar system exploration missions. It addresses questions related to the organic inventory of our solar system and its implication for the origin of life on Earth. Sample return missions aim at returning scientifically valuable samples from target celestial bodies to Earth. By analysing the samples with the use of state-of-the-art analytical techniques in laboratories here on Earth, researchers can address extremely complicated aspects of extra-terrestrial organic matter. This level of detailed sample characterisation provides the range and depth in organic analysis that are restricted in spacecraft-based exploration missions, due to the limitations of the on-board in-situ instrumentation capabilities. So far, there are four completed and in-process sample return missions with an explicit mandate to collect organic matter: Stardust and OSIRIS-REx missions of NASA, and Hayabusa and Hayabusa2 missions of JAXA. Regardless of the target body, all sample return missions dedicate to minimise terrestrial organic contamination of the returned samples, by applying various degrees or strategies of organic contamination mitigation methods. Despite the dedicated efforts in the design and execution of contamination control, it is impossible to completely eliminate sources of organic contamination. This paper aims at providing an overview of the successes and lessons learned with regards to the identification of indigenous organic matter of the returned samples vs terrestrial contamination.
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Affiliation(s)
- Queenie Hoi Shan Chan
- Planetary and Space Sciences, School of Physical Sciences, The Open University, Walton Hall, Milton Keynes, MK7 6AA UK
- Present Address: Department of Earth Sciences, Royal Holloway University of London, Egham Surrey, TW20 0EX UK
| | - Rhonda Stroud
- Code 6360, Naval Research Laboratory, Washington, DC 20375 USA
| | - Zita Martins
- Centro de Química Estrutural, Departamento de Engenharia Química, Instituto Superior Técnico (IST), Universidade de Lisboa, Avenida Rovisco Pais 1, 1049-001 Lisbon, Portugal
| | - Hikaru Yabuta
- Department of Earth and Planetary Systems Science, Hiroshima University, 1-3-1 Kagamiyama, Hiroshima, 739-8526 Japan
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29
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Wadhwa M, McCoy TJ, Schrader DL. Advances in Cosmochemistry Enabled by Antarctic Meteorites. ANNUAL REVIEW OF EARTH AND PLANETARY SCIENCES 2020; 48:233-258. [PMID: 33380754 PMCID: PMC7768904 DOI: 10.1146/annurev-earth-082719-055815] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
At present, meteorites collected in Antarctica dominate the total number of the world's known meteorites. We focus here on the scientific advances in cosmochemistry and planetary science that have been enabled by access to, and investigations of, these Antarctic meteorites. A meteorite recovered during one of the earliest field seasons of systematic searches, Elephant Moraine (EET) A79001, was identified as having originated on Mars based on the composition of gases released from shock melt pockets in this rock. Subsequently, the first lunar meteorite, Allan Hills (ALH) 81005, was also recovered from the Antarctic. Since then, many more meteorites belonging to these two classes of planetary meteorites, as well as other previously rare or unknown classes of meteorites (particularly primitive chondrites and achondrites), have been recovered from Antarctica. Studies of these samples are providing unique insights into the origin and evolution of the Solar System and planetary bodies.
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Affiliation(s)
- Meenakshi Wadhwa
- School of Earth and Space Exploration, Arizona State University, Tempe, Arizona 85287, USA
| | - Timothy J McCoy
- Department of Mineral Sciences, National Museum of Natural History, Smithsonian Institution, Washington, DC 20560, USA
| | - Devin L Schrader
- School of Earth and Space Exploration, Arizona State University, Tempe, Arizona 85287, USA
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30
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Furukawa Y, Chikaraishi Y, Ohkouchi N, Ogawa NO, Glavin DP, Dworkin JP, Abe C, Nakamura T. Extraterrestrial ribose and other sugars in primitive meteorites. Proc Natl Acad Sci U S A 2019; 116:24440-24445. [PMID: 31740594 PMCID: PMC6900709 DOI: 10.1073/pnas.1907169116] [Citation(s) in RCA: 101] [Impact Index Per Article: 16.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/02/2022] Open
Abstract
Sugars are essential molecules for all terrestrial biota working in many biological processes. Ribose is particularly essential as a building block of RNA, which could have both stored information and catalyzed reactions in primitive life on Earth. Meteorites contain a number of organic compounds including key building blocks of life, i.e., amino acids, nucleobases, and phosphate. An amino acid has also been identified in a cometary sample. However, the presence of extraterrestrial bioimportant sugars remains unclear. We analyzed sugars in 3 carbonaceous chondrites and show evidence of extraterrestrial ribose and other bioessential sugars in primitive meteorites. The 13C-enriched stable carbon isotope compositions (δ13C vs.VPDB) of the detected sugars show that the sugars are of extraterrestrial origin. We also conducted a laboratory simulation experiment of a potential sugar formation reaction in space. The compositions of pentoses in meteorites and the composition of the products of the laboratory simulation suggest that meteoritic sugars were formed by formose-like processes. The mineral compositions of these meteorites further suggest the formation of these sugars both before and after the accretion of their parent asteroids. Meteorites were carriers of prebiotic organic molecules to the early Earth; thus, the detection of extraterrestrial sugars in meteorites establishes the existence of natural geological routes to make and preserve them as well as raising the possibility that extraterrestrial sugars contributed to forming functional biopolymers like RNA on the early Earth or other primitive worlds.
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Affiliation(s)
| | - Yoshito Chikaraishi
- Institute of Low Temperature Science, Hokkaido University, 060-0819 Sapporo, Japan
- Biogeochemistry Program, Japan Agency for Marine-Earth Science and Technology, 237-0061 Yokosuka, Japan
| | - Naohiko Ohkouchi
- Biogeochemistry Program, Japan Agency for Marine-Earth Science and Technology, 237-0061 Yokosuka, Japan
| | - Nanako O Ogawa
- Biogeochemistry Program, Japan Agency for Marine-Earth Science and Technology, 237-0061 Yokosuka, Japan
| | - Daniel P Glavin
- Solar System Exploration Division, NASA Goddard Space Flight Center, Greenbelt, MD 20771
| | - Jason P Dworkin
- Solar System Exploration Division, NASA Goddard Space Flight Center, Greenbelt, MD 20771
| | - Chiaki Abe
- Department of Earth Science, Tohoku University, 980-8578 Sendai, Japan
| | - Tomoki Nakamura
- Department of Earth Science, Tohoku University, 980-8578 Sendai, Japan
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31
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Glavin DP, Burton AS, Elsila JE, Aponte JC, Dworkin JP. The Search for Chiral Asymmetry as a Potential Biosignature in our Solar System. Chem Rev 2019; 120:4660-4689. [DOI: 10.1021/acs.chemrev.9b00474] [Citation(s) in RCA: 123] [Impact Index Per Article: 20.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Affiliation(s)
- Daniel P. Glavin
- NASA Goddard Space Flight Center, Greenbelt, Maryland 20771, United States
| | - Aaron S. Burton
- NASA Johnson Space Center, Houston, Texas 77058, United States
| | - Jamie E. Elsila
- NASA Goddard Space Flight Center, Greenbelt, Maryland 20771, United States
| | - José C. Aponte
- NASA Goddard Space Flight Center, Greenbelt, Maryland 20771, United States
- Catholic University of America, Washington, D.C. 20064, United States
| | - Jason P. Dworkin
- NASA Goddard Space Flight Center, Greenbelt, Maryland 20771, United States
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32
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Possible Roles of Amphiphilic Molecules in the Origin of Biological Homochirality. Symmetry (Basel) 2019. [DOI: 10.3390/sym11080966] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022] Open
Abstract
A review. The question of homochirality is an intriguing problem in the field of chemistry, and is deeply related to the origin of life. Though amphiphiles and their supramolecular assembly have attracted less attention compared to biomacromolecules such as RNA and proteins, the lipid world hypothesis sheds new light on the origin of life. This review describes how amphiphilic molecules are possibly involved in the scenario of homochirality. Some prebiotic conditions relevant to amphiphilic molecules will also be described. It could be said that the chiral properties of amphiphilic molecules have various interesting features such as compositional information, spontaneous formation, the ability to exchange components, fission and fusion, adsorption, and permeation. This review aims to clarify the roles of amphiphiles regarding homochirality, and to determine what kinds of physical properties of amphiphilic molecules could have played a role in the scenario of homochirality.
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33
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Naraoka H, Hashiguchi M, Sato Y, Hamase K. New Applications of High-Resolution Analytical Methods to Study Trace Organic Compounds in Extraterrestrial Materials. Life (Basel) 2019; 9:life9030062. [PMID: 31357539 PMCID: PMC6789776 DOI: 10.3390/life9030062] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2019] [Revised: 07/21/2019] [Accepted: 07/22/2019] [Indexed: 11/16/2022] Open
Abstract
Organic compounds are present as complex mixtures in extraterrestrial materials including meteorites, which may have played important roles in the origin of life on the primitive Earth. However, the distribution and formation mechanisms of meteoritic organic compounds are not well understood, because conventional analytical methods have limited resolution and sensitivity to resolve their molecular complexity. In this study, advanced instrumental development and analyses are proposed in order to study the trace organic compounds of extraterrestrial materials: (1) a clean room environment to avoid organic contamination during analysis; (2) high-mass-resolution analysis (up to ~150,000 m/m) coupled with high-performance liquid chromatography (HPLC) in order to determine the elemental composition using exact mass for inferring the chemical structure; (3) superior chromatographic separation using a two-dimensional system in order to determine the structural and optical isomers of amino acids; and (4) in situ organic compound analysis and molecular imaging of the sample surface. This approach revealed a higher complexity of organic compounds with a heterogeneous distribution in meteorites. These new methods can be applied to study the chemical evolution of meteoritic organic compounds as well as the molecular occurrence in very-low-mass extraterrestrial materials such as asteroid-returned samples.
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Affiliation(s)
- Hiroshi Naraoka
- Research Center for Planetary Trace Organic Compounds, Kyushu University, 744 Motooka, Nishi-ku, Fukuoka 819-0395, Japan.
- Department of Earth and Planetary Sciences, Kyushu University, 744 Motooka, Nishi-ku, Fukuoka 819-0395, Japan.
| | - Minako Hashiguchi
- Research Center for Planetary Trace Organic Compounds, Kyushu University, 744 Motooka, Nishi-ku, Fukuoka 819-0395, Japan
| | - Yu Sato
- Graduate School of Pharmaceutical Sciences, Kyushu University, 3-1-1 Maidashi, Higashi-ku, Fukuoka 812-8582, Japan
| | - Kenji Hamase
- Research Center for Planetary Trace Organic Compounds, Kyushu University, 744 Motooka, Nishi-ku, Fukuoka 819-0395, Japan
- Graduate School of Pharmaceutical Sciences, Kyushu University, 3-1-1 Maidashi, Higashi-ku, Fukuoka 812-8582, Japan
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34
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Cruz-Rosas HI, Riquelme F, Santiago P, Rendón L, Buhse T, Ortega-Gutiérrez F, Borja-Urby R, Mendoza D, Gaona C, Miramontes P, Cocho G. Multiwall and bamboo-like carbon nanotubes from the Allende chondrite: A probable source of asymmetry. PLoS One 2019; 14:e0218750. [PMID: 31260466 PMCID: PMC6602194 DOI: 10.1371/journal.pone.0218750] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2019] [Accepted: 06/08/2019] [Indexed: 11/19/2022] Open
Abstract
This study presents multiwall and bamboo-like carbon nanotubes found in samples from the Allende carbonaceous chondrite using high-resolution transmission electron microscopy (HRTEM). A highly disordered lattice observed in this material suggests the presence of chiral domains in it. Our results also show amorphous and poorly-graphitized carbon, nanodiamonds, and onion-like fullerenes. The presence of multiwall and bamboo-like carbon nanotubes have important implications for hypotheses that explain how a probable source of asymmetry in carbonaceous chondrites might have contributed to the enantiomeric excess in soluble organics under extraterrestrial scenarios. This is the first study proving the existence of carbon nanotubes in carbonaceous chondrites.
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Affiliation(s)
- Hugo I. Cruz-Rosas
- Facultad de Ciencias, Universidad Nacional Autónoma de México, Ciudad Universitaria, Cd. Mx., Mexico
| | - Francisco Riquelme
- Laboratorio de Sistemática Molecular, Escuela de Estudios Superiores del Jicarero, Universidad Autónoma del Estado de Morelos, Jicarero, Morelos, Mexico
| | - Patricia Santiago
- Instituto de Física, Universidad Nacional Autónoma de México, Ciudad Universitaria, Cd. Mx., Mexico
| | - Luis Rendón
- Instituto de Física, Universidad Nacional Autónoma de México, Ciudad Universitaria, Cd. Mx., Mexico
| | - Thomas Buhse
- Centro de Investigaciones Químicas, Universidad Autónoma del Estado de Morelos, Cuernavaca, Morelos, Mexico
| | - Fernando Ortega-Gutiérrez
- Instituto de Geología, Universidad Nacional Autónoma de México, Ciudad Universitaria, Cd. Mx., Mexico
| | - Raúl Borja-Urby
- Centro de Nanociencias y Micro y Nanotecnologías, Instituto Politécnico Nacional, Zacatenco, Cd. Mx., Mexico
| | - Doroteo Mendoza
- Instituto de Investigaciones en Materiales, Universidad Nacional Autónoma de México, Ciudad Universitaria, Cd. Mx., Mexico
| | - Carlos Gaona
- Facultad de Ciencias, Universidad Nacional Autónoma de México, Ciudad Universitaria, Cd. Mx., Mexico
| | - Pedro Miramontes
- Facultad de Ciencias, Universidad Nacional Autónoma de México, Ciudad Universitaria, Cd. Mx., Mexico
| | - Germinal Cocho
- Instituto de Física, Universidad Nacional Autónoma de México, Ciudad Universitaria, Cd. Mx., Mexico
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35
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Simkus DN, Aponte JC, Elsila JE, Parker ET, Glavin DP, Dworkin JP. Methodologies for Analyzing Soluble Organic Compounds in Extraterrestrial Samples: Amino Acids, Amines, Monocarboxylic Acids, Aldehydes, and Ketones. Life (Basel) 2019; 9:E47. [PMID: 31174308 PMCID: PMC6617175 DOI: 10.3390/life9020047] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2019] [Revised: 05/18/2019] [Accepted: 05/27/2019] [Indexed: 11/19/2022] Open
Abstract
Soluble organic compositions of extraterrestrial samples offer valuable insights into the prebiotic organic chemistry of the solar system. This review provides a summary of the techniques commonly used for analyzing amino acids, amines, monocarboxylic acids, aldehydes, and ketones in extraterrestrial samples. Here, we discuss possible effects of various experimental factors (e.g., extraction protocols, derivatization methods, and chromatographic techniques) in order to highlight potential influences on the results obtained from different methodologies. This detailed summary and assessment of current techniques is intended to serve as a basic guide for selecting methodologies for soluble organic analyses and to emphasize some key considerations for future method development.
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Affiliation(s)
- Danielle N Simkus
- NASA Postdoctoral Program at NASA Goddard Space Flight Center, Greenbelt, MD 20771, USA.
- Solar System Exploration Division, NASA Goddard Space Flight Center, Greenbelt, MD 20771, USA.
| | - José C Aponte
- Solar System Exploration Division, NASA Goddard Space Flight Center, Greenbelt, MD 20771, USA.
- Department of Chemistry, Catholic University of America, Washington, D.C. 20064, USA.
| | - Jamie E Elsila
- Solar System Exploration Division, NASA Goddard Space Flight Center, Greenbelt, MD 20771, USA.
| | - Eric T Parker
- Solar System Exploration Division, NASA Goddard Space Flight Center, Greenbelt, MD 20771, USA.
| | - Daniel P Glavin
- Solar System Exploration Division, NASA Goddard Space Flight Center, Greenbelt, MD 20771, USA.
| | - Jason P Dworkin
- Solar System Exploration Division, NASA Goddard Space Flight Center, Greenbelt, MD 20771, USA.
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36
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Aponte JC, Whitaker D, Powner MW, Elsila JE, Dworkin JP. Analyses of Aliphatic Aldehydes and Ketones in Carbonaceous Chondrites. ACS EARTH & SPACE CHEMISTRY 2019; 3:463-472. [PMID: 32617450 PMCID: PMC7330996 DOI: 10.1021/acsearthspacechem.9b00006] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/10/2023]
Abstract
Aliphatic aldehydes and ketones are essential building blocks for the synthesis of more complex organic compounds. Despite their potentially key role as precursors of astrobiologically important molecules, such as amino acids and carboxylic acids, this family of compounds has scarcely been evaluated in carbonaceous chondrites. The paucity of such analyses likely derives from the low concentration of aldehydes and ketones in the meteorites and from the currently used chromatographic methodologies that have not been optimized for meteorite analysis. In this work, we report the development of a novel analytical method to quantify the molecular distribution and compound-specific isotopic analysis of 29 aliphatic aldehydes and ketones. Using this method, we have investigated the molecular distribution and 13C-isotopic composition of aldehydes and ketones in 10 carbonaceous chondrites from the CI, CM, CR, and CV groups. The total concentration of carbonyl compounds ranged from 130 to 1000 nmol g-1 of meteorite with formaldehyde, acetaldehyde, and acetone being the most abundant species in all investigated samples. The 13C-isotopic values ranged from -67 to +64‰ and we did not observe clear relationships between 13C-content and molecular weight. Accurately measuring the relative abundances, determining the molecular distribution, and isotopic composition of chondritic organic compounds is central in assessing both their formation chemistry and synthetic relationships.
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Affiliation(s)
- José C. Aponte
- Solar System Exploration Division, Code 691, NASA Goddard Space Flight Center, Greenbelt, Maryland 20771, United States
- Department of Chemistry, Catholic University of America, Washington, DC 20064, United States
| | - Daniel Whitaker
- Department of Chemistry, University College London, Gordon Street, London WC1H 0AJ, United Kingdom
| | - Matthew W. Powner
- Department of Chemistry, University College London, Gordon Street, London WC1H 0AJ, United Kingdom
| | - Jamie E. Elsila
- Solar System Exploration Division, Code 691, NASA Goddard Space Flight Center, Greenbelt, Maryland 20771, United States
| | - Jason P. Dworkin
- Solar System Exploration Division, Code 691, NASA Goddard Space Flight Center, Greenbelt, Maryland 20771, United States
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37
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Garcia AD, Meinert C, Sugahara H, Jones NC, Hoffmann SV, Meierhenrich UJ. The Astrophysical Formation of Asymmetric Molecules and the Emergence of a Chiral Bias. Life (Basel) 2019; 9:E29. [PMID: 30884807 PMCID: PMC6463258 DOI: 10.3390/life9010029] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2019] [Revised: 03/11/2019] [Accepted: 03/11/2019] [Indexed: 11/17/2022] Open
Abstract
The biomolecular homochirality in living organisms has been investigated for decades, but its origin remains poorly understood. It has been shown that circular polarized light (CPL) and other energy sources are capable of inducing small enantiomeric excesses (ees) in some primary biomolecules, such as amino acids or sugars. Since the first findings of amino acids in carbonaceous meteorites, a scenario in which essential chiral biomolecules originate in space and are delivered by celestial bodies has arisen. Numerous studies have thus focused on their detection, identification, and enantiomeric excess calculations in extraterrestrial matrices. In this review we summarize the discoveries in amino acids, sugars, and organophosphorus compounds in meteorites, comets, and laboratory-simulated interstellar ices. Based on available analytical data, we also discuss their interactions with CPL in the ultraviolet (UV) and vacuum ultraviolet (VUV) regions, their abiotic chiral or achiral synthesis, and their enantiomeric distribution. Without doubt, further laboratory investigations and upcoming space missions are required to shed more light on our potential extraterrestrial molecular origins.
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Affiliation(s)
- Adrien D Garcia
- Institut de Chimie de Nice, Université Côte d'Azur, CNRS, UMR 7272, 06108 Nice, France.
| | - Cornelia Meinert
- Institut de Chimie de Nice, Université Côte d'Azur, CNRS, UMR 7272, 06108 Nice, France.
| | - Haruna Sugahara
- Institut de Chimie de Nice, Université Côte d'Azur, CNRS, UMR 7272, 06108 Nice, France.
- Japan Aerospace Exploration Agency⁻Institute of Space and Astronautical Science, 3-1-1 Yoshinodai, Chuo Sagamihara, Kanagawa 252-5210, Japan.
| | - Nykola C Jones
- ISA, Department of Physics and Astronomy, Aarhus University, 8000 Aarhus C, Denmark.
| | - Søren V Hoffmann
- ISA, Department of Physics and Astronomy, Aarhus University, 8000 Aarhus C, Denmark.
| | - Uwe J Meierhenrich
- Institut de Chimie de Nice, Université Côte d'Azur, CNRS, UMR 7272, 06108 Nice, France.
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38
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Aponte JC, Woodward HK, Abreu NM, Elsila JE, Dworkin JP. Molecular Distribution, 13C-Isotope, and Enantiomeric Compositions of Carbonaceous Chondrite Monocarboxylic Acids. METEORITICS & PLANETARY SCIENCE 2019; 54:415-430. [PMID: 32499671 PMCID: PMC7271972 DOI: 10.1111/maps.13216] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/17/2018] [Accepted: 10/17/2018] [Indexed: 05/25/2023]
Abstract
The water-soluble organic compounds in carbonaceous chondrite meteorites constitute a record of the synthetic reactions occurring at the birth of the solar system and those taking place during parent body alteration and may have been important for the later origins and development of life on Earth. In this present work, we have developed a novel methodology for the simultaneous analysis of the molecular distribution, compound-specific δ13C and enantiomeric compositions of aliphatic monocarboxylic acids (MCA) extracted from the hot-water extracts of sixteen carbonaceous chondrites from CM, CR, CO, CV and CK groups. We observed high concentrations of meteoritic MCAs, with total carbon weight percentages which in some cases approached those of carbonates and insoluble organic matter. Moreover, we found that the concentration of MCAs in CR chondrites is higher than in the other meteorite groups, with acetic acid exhibiting the highest concentration in all samples. The abundance of MCAs decreased with increasing molecular weight and with increasing aqueous and/or thermal alteration experienced by the meteorite sample. The δ13C isotopic values of MCAs ranged from -52 to +27‰, and aside from an inverse relationship between δ13C value and carbon straight-chain length for C3-C6 MCAs in Murchison, the 13C-isotopic values did not correlate with the number of carbon atoms per molecule. We also observed racemic compositions of 2-methylbutanoic acid in CM and CR chondrites. We used this novel analytical protocol and collective data to shed new light on the prebiotic origins of chondritic MCAs.
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Affiliation(s)
- José C. Aponte
- Solar System Exploration Division, Code 691, NASA Goddard Space Flight Center, Greenbelt, Maryland 20771, USA
- Department of Chemistry, Catholic University of America, Washington, DC 20064, USA
| | - Hannah K. Woodward
- Department of Chemistry, Catholic University of America, Washington, DC 20064, USA
- Department of Chemistry, University of Reading, Reading RG6 6UA, UK
| | - Neyda M. Abreu
- Earth Science Program, Pennsylvania State University – Du Bois Campus, Du Bois, Pennsylvania 15801, USA
| | - Jamie E. Elsila
- Solar System Exploration Division, Code 691, NASA Goddard Space Flight Center, Greenbelt, Maryland 20771, USA
| | - Jason P. Dworkin
- Solar System Exploration Division, Code 691, NASA Goddard Space Flight Center, Greenbelt, Maryland 20771, USA
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Simkus DN, Aponte JC, Hilts RW, Elsila JE, Herd CDK. Compound-Specific Carbon Isotope Compositions of Aldehydes and Ketones in the Murchison Meteorite. METEORITICS & PLANETARY SCIENCE 2019; 54:142-156. [PMID: 32440084 PMCID: PMC7241578 DOI: 10.1111/maps.13202] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/07/2018] [Accepted: 08/23/2018] [Indexed: 05/25/2023]
Abstract
Compound-specific carbon isotope analysis (δ13C) of meteoritic organic compounds can be used to elucidate the abiotic chemical reactions involved in their synthesis. The soluble organic content of the Murchison carbonaceous chondrite has been extensively investigated over the years, with a focus on the origins of amino acids and the potential role of Strecker-cyanohydrin synthesis in the early solar system. Previous δ13C investigations have targeted α-amino acid and α-hydroxy acid Strecker products and reactant HCN; however, δ13C values for meteoritic aldehydes and ketones (Strecker precursors) have not yet been reported. As such, the distribution of aldehydes and ketones in the cosmos and their role in prebiotic reactions have not been fully investigated. Here, we have applied an optimized O-(2,3,4,5,6-pentafluorobenzyl)hydroxylamine (PFBHA) derivatization procedure to the extraction, identification and δ13C analysis of carbonyl compounds in the Murchison meteorite. A suite of aldehydes and ketones, dominated by acetaldehyde, propionaldehyde and acetone, were detected in the sample. δ13C values, ranging from -10.0‰ to +66.4‰, were more 13C-depleted than would be expected for aldehydes and ketones derived from the interstellar medium, based on interstellar 12C/13C ratios. These relatively 13C-depleted values suggest that chemical processes taking place in asteroid parent bodies (e.g. oxidation of the IOM) may provide a secondary source of aldehydes and ketones in the solar system. Comparisons between δ13C compositions of meteoritic aldehydes and ketones and other organic compound classes were used to evaluate potential structural relationships and associated reactions, including Strecker synthesis and alteration-driven chemical pathways.
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Affiliation(s)
- Danielle N. Simkus
- Department of Earth and Atmospheric Sciences, University of Alberta, Edmonton, AB, Canada
- Current affiliation: NASA Postdoctoral Program at NASA Goddard Space Flight Center, Greenbelt, MD, USA
- Solar System Exploration Division, Code 691, NASA Goddard Space Flight Center, Greenbelt, MD, USA
| | - José C. Aponte
- Solar System Exploration Division, Code 691, NASA Goddard Space Flight Center, Greenbelt, MD, USA
- Catholic University of America, Washington, D.C., USA
| | - Robert W. Hilts
- Department of Physical Sciences, MacEwan University, Edmonton, AB, Canada
| | - Jamie E. Elsila
- Solar System Exploration Division, Code 691, NASA Goddard Space Flight Center, Greenbelt, MD, USA
| | - Christopher D. K. Herd
- Department of Earth and Atmospheric Sciences, University of Alberta, Edmonton, AB, Canada
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40
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Abstract
The discovery of meteoritic alpha-amino acids with significant enantiomeric excesses of the L-form has suggested that some cosmic factors could serve as the initial source for chiral imbalance of organic compounds delivered to the early Earth. The paper reviews major hypothesis considering the influence of chiral irradiation and chiral combinations of physical fields on the possible ways asymmetric synthesis and transformations of organics could take place within the solar system. They could result in a small enantiomeric imbalance of some groups of compounds. More attention is paid to the hypothesis on parity violation of weak interaction that was supposed to cause homochirality of all primary particles and a more significant homochirality of compounds directly synthesized from the latter in a plasma reactor. The first experiment with material synthesized in a plasma torch resulting from a super-high-velocity impact showed formation of alanine with the excess of L-form between 7 and 25%. The supposed conclusion is that L-amino acids could serve as a starting homochiral biomolecular pool for life to emerge all over the Universe.
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41
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Fioroni M, Tartera AK, DeYonker NJ. Propylene Oxide Formation on a Silica Surface with Peroxo Defects: Implications in Astrochemistry. J Phys Chem A 2018; 122:9100-9106. [PMID: 30372070 DOI: 10.1021/acs.jpca.8b04955] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The formation of the chiral molecule propylene oxide (CH3CHCH2O) recently detected in the interstellar medium (ISM) is proposed to take place on an amorphous silicate grain surface where peroxo defects are present. A computational analysis conducted at the DFT and MP2-F12 levels of theory on a neat amorphous silica model supports such a hypothesis resulting in (a) strong thermodynamic driving forces and low activation energies allowing the synthesis of CH3CHCH2O at low temperatures, (b) chemical defects on silica surfaces promoting heterogeneous catalysis of the increasing molecular complexity found in interstellar and circumstellar medium, and (c) chemical defects that have implications on understanding how processing phases modify the nature of the reactive groups on a silica surface affecting the surface catalytic activity.
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Affiliation(s)
- Marco Fioroni
- Department of Chemistry , The University of Memphis , 213 Smith Chemistry Building, Memphis , Tennessee 38152 , United States
| | - A Kelly Tartera
- Department of Chemistry , The University of Memphis , 213 Smith Chemistry Building, Memphis , Tennessee 38152 , United States
| | - Nathan J DeYonker
- Department of Chemistry , The University of Memphis , 213 Smith Chemistry Building, Memphis , Tennessee 38152 , United States
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42
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Cooper G, Rios AC, Nuevo M. Monosaccharides and Their Derivatives in Carbonaceous Meteorites: A Scenario for Their Synthesis and Onset of Enantiomeric Excesses. Life (Basel) 2018; 8:life8030036. [PMID: 30150578 PMCID: PMC6161268 DOI: 10.3390/life8030036] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2018] [Revised: 07/06/2018] [Accepted: 08/22/2018] [Indexed: 11/16/2022] Open
Abstract
Carbonaceous meteorites provide the best glimpse into the solar system’s earliest physical and chemical processes. These ancient objects, ~4.56 billion years old, contain evidence of phenomena ranging from solar system formation to the synthesis of organic compounds by aqueous and (likely) low-temperature photolytic reactions. Collectively, chemical reactions resulted in an insoluble kerogen-like carbon phase and a complex mixture of discrete soluble compounds including amino acids, nucleobases, and monosaccharide (or “sugar”) derivatives. This review presents the documented search for sugars and their derivatives in carbonaceous meteorites. We examine early papers, published in the early 1960s, and note the analytical methods used for meteorite analysis as well as conclusions on the results. We then present the recent finding of sugar derivatives including sugar alcohols and several sugar acids: The latter compounds were found to possess unusual “d” enantiomeric (mirror-image) excesses. After discussions on the possible roles of interstellar grain chemistry and meteorite parent body aqueous activity in the synthesis of sugar derivatives, we present a scenario that suggests that most of Earth’s extraterrestrial sugar alcohols (e.g., glycerol) were synthesized by interstellar irradiation and/or cold grain chemistry and that the early solar disk was the location of the initial enantiomeric excesses in meteoritic sugar derivatives.
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Affiliation(s)
- George Cooper
- NASA-Ames Research Center, Moffett Field, CA 94035, USA.
| | - Andro C Rios
- NASA-Ames Research Center, Moffett Field, CA 94035, USA.
- Blue Marble Space, 1001 4th Ave, Ste 3201, Seattle, WA 98154, USA.
| | - Michel Nuevo
- NASA-Ames Research Center, Moffett Field, CA 94035, USA.
- Bay Area Environmental Research Institute, NASA Research Park, Moffett Field, CA 94035, USA.
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43
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Burton AS, Berger EL. Insights into Abiotically-Generated Amino Acid Enantiomeric Excesses Found in Meteorites. Life (Basel) 2018; 8:life8020014. [PMID: 29757224 PMCID: PMC6027462 DOI: 10.3390/life8020014] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2018] [Revised: 05/09/2018] [Accepted: 05/10/2018] [Indexed: 11/16/2022] Open
Abstract
Biology exhibits homochirality, in that only one of two possible molecular configurations (called enantiomers) is used in both proteins and nucleic acids. The origin of this phenomenon is currently unknown, as nearly all known abiotic mechanisms for generating these compounds result in equal (racemic) mixtures of both enantiomers. However, analyses of primitive meteorites have revealed that a number of amino acids of extraterrestrial origin are present in enantiomeric excess, suggesting that there was an abiotic route to synthesize amino acids in a non-racemic manner. Here we review the amino acid contents of a range of meteorites, describe mechanisms for amino acid formation and their potential to produce amino acid enantiomeric excesses, and identify processes that could have amplified enantiomeric excesses.
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Affiliation(s)
- Aaron S Burton
- Astromaterials Research and Exploration Science, NASA Johnson Space Center, Houston, TX 77058, USA.
| | - Eve L Berger
- GeoControl Systems, Jacobs JETS contract, NASA Johnson Space Center, Houston, TX 77058, USA.
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Pearce BKD, Tupper AS, Pudritz RE, Higgs PG. Constraining the Time Interval for the Origin of Life on Earth. ASTROBIOLOGY 2018; 18:343-364. [PMID: 29570409 DOI: 10.1089/ast.2017.1674] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
Abstract
Estimates of the time at which life arose on Earth make use of two types of evidence. First, astrophysical and geophysical studies provide a timescale for the formation of Earth and the Moon, for large impact events on early Earth, and for the cooling of the early magma ocean. From this evidence, we can deduce a habitability boundary, which is the earliest point at which Earth became habitable. Second, biosignatures in geological samples, including microfossils, stromatolites, and chemical isotope ratios, provide evidence for when life was actually present. From these observations we can deduce a biosignature boundary, which is the earliest point at which there is clear evidence that life existed. Studies with molecular phylogenetics and records of the changing level of oxygen in the atmosphere give additional information that helps to determine the biosignature boundary. Here, we review the data from a wide range of disciplines to summarize current information on the timings of these two boundaries. The habitability boundary could be as early as 4.5 Ga, the earliest possible estimate of the time at which Earth had a stable crust and hydrosphere, or as late as 3.9 Ga, the end of the period of heavy meteorite bombardment. The lack of consensus on whether there was a late heavy meteorite bombardment that was significant enough to prevent life is the largest uncertainty in estimating the time of the habitability boundary. The biosignature boundary is more closely constrained. Evidence from carbon isotope ratios and stromatolite fossils both point to a time close to 3.7 Ga. Life must have emerged in the interval between these two boundaries. The time taken for life to appear could, therefore, be within 200 Myr or as long as 800 Myr. Key Words: Origin of life-Astrobiology-Habitability-Biosignatures-Geochemistry-Early Earth. Astrobiology 18, 343-364.
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Affiliation(s)
- Ben K D Pearce
- Origins Institute, Department of Physics and Astronomy, McMaster University , Hamilton, Canada
| | - Andrew S Tupper
- Origins Institute, Department of Physics and Astronomy, McMaster University , Hamilton, Canada
| | - Ralph E Pudritz
- Origins Institute, Department of Physics and Astronomy, McMaster University , Hamilton, Canada
| | - Paul G Higgs
- Origins Institute, Department of Physics and Astronomy, McMaster University , Hamilton, Canada
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Pizzarello S, Shock E. Carbonaceous Chondrite Meteorites: the Chronicle of a Potential Evolutionary Path between Stars and Life. ORIGINS LIFE EVOL B 2017; 47:249-260. [PMID: 28078499 DOI: 10.1007/s11084-016-9530-1] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2016] [Accepted: 11/01/2016] [Indexed: 10/20/2022]
Abstract
The biogenic elements, H, C, N, O, P and S, have a long cosmic history, whose evolution can still be observed in diverse locales of the known universe, from interstellar clouds of gas and dust, to pre-stellar cores, nebulas, protoplanetary discs, planets and planetesimals. The best analytical window into this cosmochemical evolution as it neared Earth has been provided so far by the small bodies of the Solar System, some of which were not significantly altered by the high gravitational pressures and temperatures that accompanied the formation of larger planets and may carry a pristine record of early nebular chemistry. Asteroids have delivered such records, as their fragments reach the Earth frequently and become available for laboratory analyses. The Carbonaceous Chondrite meteorites (CC) are a group of such fragments with the further distinction of containing abundant organic materials with structures as diverse as kerogen-like macromolecules and simpler compounds with identical counterparts in Earth's biosphere. All have revealed a lineage to cosmochemical synthetic regimes. Several CC show that asteroids underwent aqueous alteration of their minerals or rock metamorphism but may yet yield clues to the reactivity of organic compounds during parent-body processes, on asteroids as well as larger ocean worlds and planets. Whether the exogenous delivery by meteorites held an advantage in Earth's molecular evolution remains an open question as many others regarding the origins of life are. Nonetheless, the natural samples of meteorites allow exploring the physical and chemical processes that might have led to a selected chemical pool amenable to the onset of life. Graphical Abstract ᅟ.
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Affiliation(s)
- Sandra Pizzarello
- School of Molecular Sciences, Arizona State University, Tempe, AZ, 85287-1604, USA.
| | - Everett Shock
- School of Molecular Sciences, Arizona State University, Tempe, AZ, 85287-1604, USA
- School of Earth & Space Exploration, Arizona State University, Tempe, AZ, 85218, USA
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46
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Mathies RA, Razu ME, Kim J, Stockton AM, Turin P, Butterworth A. Feasibility of Detecting Bioorganic Compounds in Enceladus Plumes with the Enceladus Organic Analyzer. ASTROBIOLOGY 2017; 17:902-912. [PMID: 28915087 PMCID: PMC5610425 DOI: 10.1089/ast.2017.1660] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/16/2023]
Abstract
Enceladus presents an excellent opportunity to detect organic molecules that are relevant for habitability as well as bioorganic molecules that provide evidence for extraterrestrial life because Enceladus' plume is composed of material from the subsurface ocean that has a high habitability potential and significant organic content. A primary challenge is to send instruments to Enceladus that can efficiently sample organic molecules in the plume and analyze for the most relevant molecules with the necessary detection limits. To this end, we present the scientific feasibility and engineering design of the Enceladus Organic Analyzer (EOA) that uses a microfluidic capillary electrophoresis system to provide sensitive detection of a wide range of relevant organic molecules, including amines, amino acids, and carboxylic acids, with ppm plume-detection limits (100 pM limits of detection). Importantly, the design of a capture plate that effectively gathers plume ice particles at encounter velocities from 200 m/s to 5 km/s is described, and the ice particle impact is modeled to demonstrate that material will be efficiently captured without organic decomposition. While the EOA can also operate on a landed mission, the relative technical ease of a fly-by mission to Enceladus, the possibility to nondestructively capture pristine samples from deep within the Enceladus ocean, plus the high sensitivity of the EOA instrument for molecules of bioorganic relevance for life detection argue for the inclusion of EOA on Enceladus missions. Key Words: Lab-on-a-chip-Organic biomarkers-Life detection-Planetary exploration. Astrobiology 17, 902-912.
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Affiliation(s)
- Richard A. Mathies
- Department of Chemistry, University of California at Berkeley, Berkeley, California
| | - Md Enayet Razu
- Department of Mechanical Engineering, Texas Tech University, Lubbock, Texas
| | - Jungkyu Kim
- Department of Mechanical Engineering, Texas Tech University, Lubbock, Texas
| | - Amanda M. Stockton
- Department of Chemistry and Biochemistry, Georgia Institute of Technology, Atlanta, Georgia
| | - Paul Turin
- Berkeley Space Sciences Lab, University of California at Berkeley, Berkeley, California
| | - Anna Butterworth
- Berkeley Space Sciences Lab, University of California at Berkeley, Berkeley, California
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47
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Koga T, Naraoka H. A new family of extraterrestrial amino acids in the Murchison meteorite. Sci Rep 2017; 7:636. [PMID: 28377577 PMCID: PMC5428853 DOI: 10.1038/s41598-017-00693-9] [Citation(s) in RCA: 64] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2016] [Accepted: 03/08/2017] [Indexed: 11/09/2022] Open
Abstract
The occurrence of extraterrestrial organic compounds is a key for understanding prebiotic organic synthesis in the universe. In particular, amino acids have been studied in carbonaceous meteorites for almost 50 years. Here we report ten new amino acids identified in the Murchison meteorite, including a new family of nine hydroxy amino acids. The discovery of mostly C3 and C4 structural isomers of hydroxy amino acids provides insight into the mechanisms of extraterrestrial synthesis of organic compounds. A complementary experiment suggests that these compounds could be produced from aldehydes and ammonia on the meteorite parent body. This study indicates that the meteoritic amino acids could be synthesized by mechanisms in addition to the Strecker reaction, which has been proposed to be the main synthetic pathway to produce amino acids.
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Affiliation(s)
- Toshiki Koga
- Department of Earth and Planetray Sciences, Kyushu University, 744 Motooka, Nishi-ku, Fukuoka, 819-0395, Japan
| | - Hiroshi Naraoka
- Department of Earth and Planetray Sciences, Kyushu University, 744 Motooka, Nishi-ku, Fukuoka, 819-0395, Japan. .,Research Center for Planetary Trace Organic Compounds, Kyushu University, 744 Motooka, Nishi-ku, Fukuoka, 819-0395, Japan.
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48
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Pizzarello S. Identifying Chiral Molecules and their Enantiomeric Excesses in Extraterrestrial Samples: An Experimental Journey. Isr J Chem 2016. [DOI: 10.1002/ijch.201600039] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Sandra Pizzarello
- Arizona State University; School of Molecular Sciences; Tempe AZ 85018-1604 (USA)
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49
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Elsila JE, Aponte JC, Blackmond DG, Burton AS, Dworkin JP, Glavin DP. Meteoritic Amino Acids: Diversity in Compositions Reflects Parent Body Histories. ACS CENTRAL SCIENCE 2016; 2:370-9. [PMID: 27413780 PMCID: PMC4919777 DOI: 10.1021/acscentsci.6b00074] [Citation(s) in RCA: 73] [Impact Index Per Article: 8.1] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/09/2016] [Indexed: 05/21/2023]
Abstract
The analysis of amino acids in meteorites dates back over 50 years; however, it is only in recent years that research has expanded beyond investigations of a narrow set of meteorite groups (exemplified by the Murchison meteorite) into meteorites of other types and classes. These new studies have shown a wide diversity in the abundance and distribution of amino acids across carbonaceous chondrite groups, highlighting the role of parent body processes and composition in the creation, preservation, or alteration of amino acids. Although most chiral amino acids are racemic in meteorites, the enantiomeric distribution of some amino acids, particularly of the nonprotein amino acid isovaline, has also been shown to vary both within certain meteorites and across carbonaceous meteorite groups. Large l-enantiomeric excesses of some extraterrestrial protein amino acids (up to ∼60%) have also been observed in rare cases and point to nonbiological enantiomeric enrichment processes prior to the emergence of life. In this Outlook, we review these recent meteoritic analyses, focusing on variations in abundance, structural distributions, and enantiomeric distributions of amino acids and discussing possible explanations for these observations and the potential for future work.
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Affiliation(s)
- Jamie E. Elsila
- Solar System Exploration Division, NASA Goddard Space Flight Center, Greenbelt, Maryland 20771, United States
- E-mail:
| | - José C. Aponte
- Solar System Exploration Division, NASA Goddard Space Flight Center, Greenbelt, Maryland 20771, United States
- Department
of Chemistry, Catholic University, Washington, D.C. 20064, United States
| | - Donna G. Blackmond
- Department of Chemistry, The Scripps Research
Institute, La Jolla, California 92037, United States
| | - Aaron S. Burton
- Astromaterials Research and Exploration
Science Division, NASA Johnson Space Center, Houston, Texas 77058, United States
| | - Jason P. Dworkin
- Solar System Exploration Division, NASA Goddard Space Flight Center, Greenbelt, Maryland 20771, United States
| | - Daniel P. Glavin
- Solar System Exploration Division, NASA Goddard Space Flight Center, Greenbelt, Maryland 20771, United States
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50
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Enantiomer excesses of rare and common sugar derivatives in carbonaceous meteorites. Proc Natl Acad Sci U S A 2016; 113:E3322-31. [PMID: 27247410 DOI: 10.1073/pnas.1603030113] [Citation(s) in RCA: 54] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Biological polymers such as nucleic acids and proteins are constructed of only one-the d or l-of the two possible nonsuperimposable mirror images (enantiomers) of selected organic compounds. However, before the advent of life, it is generally assumed that chemical reactions produced 50:50 (racemic) mixtures of enantiomers, as evidenced by common abiotic laboratory syntheses. Carbonaceous meteorites contain clues to prebiotic chemistry because they preserve a record of some of the Solar System's earliest (∼4.5 Gy) chemical and physical processes. In multiple carbonaceous meteorites, we show that both rare and common sugar monoacids (aldonic acids) contain significant excesses of the d enantiomer, whereas other (comparable) sugar acids and sugar alcohols are racemic. Although the proposed origins of such excesses are still tentative, the findings imply that meteoritic compounds and/or the processes that operated on meteoritic precursors may have played an ancient role in the enantiomer composition of life's carbohydrate-related biopolymers.
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