Multispecies coexistence in fragmented landscapes

Fundamental principles of the effect of habitat fragmentation on species with different movement rates

Habitat loss and fragmentation have independent impacts on biodiversity; thus, field studies are needed to distinguish their impacts. Moreover, species with different locomotion rates respond differently to fragmentation, complicating direct comparisons of the effects of habitat loss and fragmentation across differing taxa and landscapes. To overcome these challenges, we combined mechanistic mathematical modeling and laboratory experiments to compare how species with different locomotion rates were affected by low (∼80% intact) and high (∼30% intact) levels of habitat loss. In our laboratory experiment, we used Caenorhabditis elegans strains with different locomotion rates and subjected them to the different levels of habitat loss and fragmentation by placing Escherichia coli (C. elegans food) over different proportions of the Petri dish. We developed a partial differential equation model that incorporated spatial and biological phenomena to predict the impacts of habitat arrangement on populations. Only species with low rates of locomotion declined significantly in abundance as fragmentation increased in areas with low (p = 0.0270) and high (p = 0.0243) levels of habitat loss. Despite that species with high locomotion rates changed little in abundance regardless of the spatial arrangement of resources, they had the lowest abundance and growth rates in all environments because the negative effect of fragmentation created a mismatch between the population distribution and the resource distribution. Our findings shed new light on incorporating the role of locomotion in determining the effects of habitat fragmentation.

Ecosystem Size Mediates the Effects of Resource Flows on Species Diversity and Ecosystem Function at Different Scales

Ecosystem size and spatial resource flows are key factors driving species diversity and ecosystem function. However, the question of whether and how these drivers interact has been largely overlooked. Here, we investigated how ecosystem size asymmetry affects species diversity and function of two-patch meta-ecosystems connected through flows of nonliving resources. We conducted a microcosm experiment, mimicking resource flows between ecosystems of different sizes yet otherwise identical properties or between ecosystems of the same size. Meta-ecosystems with asymmetric ecosystem sizes displayed higher α-diversity but lower β-diversity and ecosystem function (total biomass) than their unconnected counterparts. At the same time, such an effect was not found for meta-ecosystems of identical patch sizes. Our work demonstrates how the size of ecosystems, interconnected via resource flows, can modulate cross-ecosystem dynamics, having implications for species diversity and function across scales.

Landscape and environmental heterogeneity support coexistence in competitive metacommunities

Metapopulation models have been instrumental in quantifying the ecological impact of landscape structure on the survival of a focal species. However, extensions to multiple species with arbitrary dispersal networks often rely on phenomenological assumptions that inevitably limit their scope. Here, we propose a multilayer network model of competitive dispersing metacommunities to investigate how spatially structured environments impact species coexistence and ecosystem stability. We introduce the concept of landscape-mediated fitness, quantifying how fit a species is in a given environment in terms of colonization and extinction. We show that, when all environments are equivalent, one species excludes all the others-except the marginal case where species fitnesses are in exact trade-off. However, we prove that stable coexistence becomes possible in sufficiently heterogeneous environments by introducing spatial disorder in the model and solving it exactly in the mean-field limit. Crucially, coexistence is supported by the spontaneous localization of species through the emergence of ecological niches. We show that our results remain qualitatively valid in arbitrary dispersal networks, where topological features can improve species coexistence by buffering competition. Finally, we employ our model to study how correlated heterogeneity promotes spatial ecological patterns in realistic terrestrial and riverine landscapes. Our work provides a framework to understand how landscape structure enables coexistence in metacommunities by acting as the substrate for ecological interactions.

Habitat amount modulates biodiversity responses to fragmentation

Anthropogenic habitat destruction leads to habitat loss and fragmentation, both of which interact to determine how biodiversity changes at the landscape level. While the detrimental effects of habitat loss are clear, there is a long-standing debate about the role of habitat fragmentation per se. We identify the influence of the total habitat amount lost as a modulator of the relationship between habitat fragmentation and biodiversity. Using a simple metacommunity model characterized by colonization-competition (C-C) trade-offs, we show that the magnitude of habitat loss can induce a unimodal response of biodiversity to habitat fragmentation. When habitat loss is low, habitat fragmentation promotes coexistence by suppressing competitively dominant species, while habitat fragmentation at high levels of habitat loss can shape many smaller isolated patches that drive extinctions of superior competitors. While the C-C trade-off is not the only mechanism for biodiversity maintenance, the modulation of habitat fragmentation effects by habitat loss is probably common. Reanalysis of a globally distributed dataset of fragmented animal and plant metacommunities shows an overall pattern that supports this hypothesis, suggesting a resolution to the debate regarding the relative importance of positive versus negative fragmentation effects.

The interplay between abiotic and biotic factors in dispersal decisions in metacommunities

Suitable conditions for species to survive and reproduce constitute their ecological niche, which is built by abiotic conditions and interactions with conspecifics and heterospecifics. Organisms should ideally assess and use information about all these environmental dimensions to adjust their dispersal decisions depending on their own internal conditions. Dispersal plasticity is often considered through its dependence on abiotic conditions or conspecific density and, to a lesser extent, with reference to the effects of interactions with heterospecifics, potentially leading to misinterpretation of dispersal drivers. Here, we first review the evidence for the effects of and the potential interplays between abiotic factors, biotic interactions with conspecifics and heterospecifics and phenotype on dispersal decisions. We then present an experimental test of these potential interplays, investigating the effects of density and interactions with conspecifics and heterospecifics on temperature-dependent dispersal in microcosms of Tetrahymena ciliates. We found significant differences in dispersal rates depending on the temperature, density and presence of another strain or species. However, the presence and density of conspecifics and heterospecifics had no effects on the thermal-dependency of dispersal. We discuss the causes and consequences of the (lack of) interplay between the different environmental dimensions and the phenotype for metacommunity assembly and dynamics. This article is part of the theme issue 'Diversity-dependence of dispersal: interspecific interactions determine spatial dynamics'.

Towards mechanistic integration of the causes and consequences of biodiversity

The global biodiversity crisis has stimulated decades of research on three themes: species coexistence, biodiversity-ecosystem functioning relationships (BEF), and biodiversity-ecosystem functional stability relationships (BEFS). However, studies on these themes are largely independent, creating barriers to an integrative understanding of the causes and consequences of biodiversity. Here we review recent progress towards mechanistic integration of coexistence, BEF, and BEFS. Mechanisms underlying the three themes can be linked in various ways, potentially creating either positive or negative relationships between them. That said, we generally expect positive associations between coexistence and BEF, and between BEF and BEFS. Our synthesis represents an initial step towards integrating causes and consequences of biodiversity; future developments should include more mechanistic approaches and broader ecological contexts.

Distribution characteristics and microbial synergistic degradation potential of polyethylene and polypropylene in freshwater estuarine sediments

The microbial degradation of polyethylene (PE) and polypropylene (PP) resins in rivers and lakes has emerged as a crucial issue in the management of microplastics. This study revealed that as the flow rate decreased longitudinally, ammonia nitrogen (NH4+-N), heavy fraction of organic carbon (HFOC), and small-size microplastics (< 1 mm) gradually accumulated in the deep and downstream estuarine sediments. Based on their surface morphology and carbonyl index, these sediments were identified as the potential hot zone for PE/PP degradation. Within the identified hot zone, concentrations of PE/PP-degrading genes, enzymes, and bacteria were significantly elevated compared to other zones, exhibiting strong intercorrelations. Analysis of niche differences revealed that the accumulation of NH4+-N and HFOC in the hot zone facilitated the synergistic coexistence of key bacteria responsible for PE/PP degradation within biofilms. The findings of this study offer a novel insight and comprehensive understanding of the distribution characteristics and synergistic degradation potential of PE/PP in natural freshwater environments.

Higher trophic levels and species with poorer dispersal traits are more susceptible to habitat loss on island fragments

Ongoing habitat loss and fragmentation caused by human activities represent one of the greatest causes of biodiversity loss. However, the effects of habitat loss and fragmentation are not felt equally among species. Here, we examined how habitat loss influenced the diversity and abundance of species from different trophic levels, with different traits, by taking advantage of an inadvertent experiment that created habitat islands from a once continuous forest via the creation of the Thousand Island Lake, a large reservoir in China. On 28 of these islands with more than a 9000-fold difference in their area (0.12-1154 ha), we sampled plants, herbivorous insects, and predatory insects using effort-controlled sampling and analyses. This allowed us to discern whether any observed differences in species diversity were due to passive sampling alone or to demographic effects that disproportionately influenced some species relative to others. We found that while most metrics of sampling effort-controlled diversity increased with island area, the strength of the effect was exacerbated for species in higher trophic levels. When we more explicitly examined differences in species composition among islands, we found that the pairwise difference in species composition among islands was dominated by species turnover but that nestedness increased with differences in island area, indicating that some species are more likely to be absent from smaller islands. Furthermore, by examining trends of several dispersal-related traits of species, we found that species with lower dispersal propensity tended to be those that were lost from smaller islands, which was observed for herbivorous and predatory insects. Our results emphasize the importance of incorporating within-patch demographic effects, as well as the taxa and traits of species when understanding the influence of habitat loss on biodiversity.

Dispersal mediates trophic interactions and habitat connectivity to alter metacommunity composition

Dispersal contributes vitally to metacommunity structure. However, interactions between dispersal and other key processes have rarely been explored, particularly in the context of multitrophic metacommunities. We investigated such a metacommunity in naturally fragmented habitats populated by butterfly species (whose dispersal capacities were previously assessed), flowering plants, and butterfly predators. Using data on butterfly species abundance, floral abundance, and predation (on experimentally placed clay butterfly models), we asked how dispersal ability mediates interactions with predators, mutualists, and the landscape matrix. In contrast to expectations, high densities of strong dispersers were found in more isolated sites and sites with low floral resource density, while intermediate dispersers maintained similar densities across isolation and floral gradients, and higher densities of poor dispersers were found in more connected sites and sites with higher floral density. These findings raise questions about how strong dispersers experience the landscape matrix and the quality of isolated and low-resource sites. Strong dispersers were able to escape habitat patches with high predation, while intermediate dispersers maintained similar densities along a predation gradient, and poor dispersers occurred at high densities in these patches, exposing them to interactions with predators. This work demonstrates that species that vary in dispersal capacities interact differently with predators and mutualist partners in a landscape context, shaping metacommunity composition.

On the limits to invasion prediction using coexistence outcomes

The dynamics of ecological communities in nature are typically characterized by probabilistic processes involving invasion dynamics. Because of technical challenges, however, the majority of theoretical and experimental studies have focused on coexistence dynamics. Therefore, it has become central to understand the extent to which coexistence outcomes can be used to predict analogous invasion outcomes relevant to systems in nature. Here, we study the limits to this predictability under a geometric and probabilistic Lotka-Volterra framework. We show that while individual survival probability in coexistence dynamics can be fairly closely translated into invader colonization probability in invasion dynamics, the translation is less precise between community persistence and community augmentation, and worse between exclusion probability and replacement probability. These results provide a guiding and testable theoretical framework regarding the translatability of outcomes between coexistence and invasion outcomes when communities are represented by Lotka-Volterra dynamics under environmental uncertainty.

Rapid monitoring of ecological persistence

Effective conservation of ecological communities requires accurate and up-to-date information about whether species are persisting or declining to extinction. The persistence of an ecological community is supported by its underlying network of species interactions. While the persistence of the network supporting the whole community is the most relevant scale for conservation, in practice, only small subsets of these networks can be monitored. There is therefore an urgent need to establish links between the small snapshots of data conservationists can collect, and the "big picture" conclusions about ecosystem health demanded by policymakers, scientists, and societies. Here, we show that the persistence of small subnetworks (motifs) in isolation-that is, their persistence when considered separately from the larger network of which they are a part-is a reliable probabilistic indicator of the persistence of the network as a whole. Our methods show that it is easier to detect if an ecological community is not persistent than if it is persistent, allowing for rapid detection of extinction risk in endangered systems. Our results also justify the common practice of predicting ecological persistence from incomplete surveys by simulating the population dynamics of sampled subnetworks. Empirically, we show that our theoretical predictions are supported by data on invaded networks in restored and unrestored areas, even in the presence of environmental variability. Our work suggests that coordinated action to aggregate information from incomplete sampling can provide a means to rapidly assess the persistence of entire ecological networks and the expected success of restoration strategies.

Urban insect bioarks of the 21st century

Insects exhibit divergent biodiversity responses to cities. Many urban populations are not at equilibrium: biodiversity decline or recovery from environmental perturbation is often still in progress. Substantial variation in urban biodiversity patterns suggests the need to understand its mechanistic basis. In addition, current urban infrastructure decisions might profoundly influence future biodiversity trends. Although many nature-based solutions to urban climate problems also support urban insect biodiversity, trade-offs are possible and should be avoided to maximize biodiversity-climate cobenefits. Because insects are coping with the dual threats of urbanization and climate change, there is an urgent need to design cities that facilitate persistence within the city footprint or facilitate compensatory responses to global climate change as species transit through the city footprint.

The significance of partial migration for food web and ecosystem dynamics

Migration is ubiquitous and can strongly shape food webs and ecosystems. Less familiar, however, is that the majority of life cycle, seasonal and diel migrations in nature are partial migrations: only a fraction of the population migrates while the other individuals remain in their resident ecosystem. Here, we demonstrate different impacts of partial migration rendering it fundamental to our understanding of the significance of migration for food web and ecosystem dynamics. First, partial migration affects the spatiotemporal distribution of individuals and the food web and ecosystem-level processes they drive differently than expected under full migration. Second, whether an individual migrates or not is regularly correlated with morphological, physiological, and/or behavioural traits that shape its food-web and ecosystem-level impacts. Third, food web and ecosystem dynamics can drive the fraction of the population migrating, enabling the potential for feedbacks between the causes and consequences of migration within and across ecosystems. These impacts, individually and in combination, can yield unintuitive effects of migration and drive the dynamics, diversity and functions of ecosystems. By presenting the first full integration of partial migration and trophic (meta-)community and (meta-)ecosystem ecology, we provide a roadmap for studying how migration affects and is affected by ecosystem dynamics in a changing world.