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Karashchuk L, Li JS, Chou GM, Walling-Bell S, Brunton SL, Tuthill JC, Brunton BW. Sensorimotor delays constrain robust locomotion in a 3D kinematic model of fly walking. eLife 2025; 13:RP99005. [PMID: 40372779 PMCID: PMC12081000 DOI: 10.7554/elife.99005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/16/2025] Open
Abstract
Walking animals must maintain stability in the presence of external perturbations, despite significant temporal delays in neural signaling and muscle actuation. Here, we develop a 3D kinematic model with a layered control architecture to investigate how sensorimotor delays constrain the robustness of walking behavior in the fruit fly, Drosophila. Motivated by the anatomical architecture of insect locomotor control circuits, our model consists of three component layers: a neural network that generates realistic 3D joint kinematics for each leg, an optimal controller that executes the joint kinematics while accounting for delays, and an inter-leg coordinator. The model generates realistic simulated walking that resembles real fly walking kinematics and sustains walking even when subjected to unexpected perturbations, generalizing beyond its training data. However, we found that the model's robustness to perturbations deteriorates when sensorimotor delay parameters exceed the physiological range. These results suggest that fly sensorimotor control circuits operate close to the temporal limit at which they can detect and respond to external perturbations. More broadly, we show how a modular, layered model architecture can be used to investigate physiological constraints on animal behavior.
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Affiliation(s)
- Lili Karashchuk
- Neuroscience Graduate Program, University of WashingtonSeattleUnited States
- Department of Neurobiology and Biophysics, University of WashingtonSeattleUnited States
- Department of Biology, University of WashingtonSeattleUnited States
| | - Jing Shuang Li
- Department of Electrical Engineering and Computer Science, University of MichiganAnn ArborUnited States
| | - Grant M Chou
- Department of Neurobiology and Biophysics, University of WashingtonSeattleUnited States
| | - Sarah Walling-Bell
- Department of Neurobiology and Biophysics, University of WashingtonSeattleUnited States
| | - Steven L Brunton
- Department of Mechanical Engineering, University of WashingtonSeattleUnited States
| | - John C Tuthill
- Department of Neurobiology and Biophysics, University of WashingtonSeattleUnited States
| | - Bingni W Brunton
- Department of Biology, University of WashingtonSeattleUnited States
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Karashchuk L, Li JS(L, Chou GM, Walling-Bell S, Brunton SL, Tuthill JC, Brunton BW. Sensorimotor delays constrain robust locomotion in a 3D kinematic model of fly walking. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2025:2024.04.18.589965. [PMID: 38712226 PMCID: PMC11071299 DOI: 10.1101/2024.04.18.589965] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/08/2024]
Abstract
Walking animals must maintain stability in the presence of external perturbations, despite significant temporal delays in neural signaling and muscle actuation. Here, we develop a 3D kinematic model with a layered control architecture to investigate how sensorimotor delays constrain robustness of walking behavior in the fruit fly, Drosophila. Motivated by the anatomical architecture of insect locomotor control circuits, our model consists of three component layers: a neural network that generates realistic 3D joint kinematics for each leg, an optimal controller that executes the joint kinematics while accounting for delays, and an inter-leg coordinator. The model generates realistic simulated walking that resembles real fly walking kinematics and sustains walking even when subjected to unexpected perturbations, generalizing beyond its training data. However, we found that the model's robustness to perturbations deteriorates when sensorimotor delay parameters exceed the physiological range. These results suggest that fly sensorimotor control circuits operate close to the temporal limit at which they can detect and respond to external perturbations. More broadly, we show how a modular, layered model architecture can be used to investigate physiological constraints on animal behavior.
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Affiliation(s)
- Lili Karashchuk
- Neuroscience Graduate Program, University of Washington, Seattle
- Present address: Allen Institute for Neural Dynamics, Seattle
| | - Jing Shuang (Lisa) Li
- Dept of Electrical Engineering and Computer Science, University of Michigan, Ann Arbor
| | - Grant M. Chou
- Dept of Physiology & Biophysics, University of Washington, Seattle
| | | | | | - John C. Tuthill
- Dept of Physiology & Biophysics, University of Washington, Seattle
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Patel D, Sejnowski T, Siegelmann H. Optimizing Attention and Cognitive Control Costs Using Temporally Layered Architectures. Neural Comput 2024; 36:2734-2763. [PMID: 39383029 DOI: 10.1162/neco_a_01718] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2024] [Accepted: 07/02/2024] [Indexed: 10/11/2024]
Abstract
The current reinforcement learning framework focuses exclusively on performance, often at the expense of efficiency. In contrast, biological control achieves remarkable performance while also optimizing computational energy expenditure and decision frequency. We propose a decision-bounded Markov decision process (DB-MDP) that constrains the number of decisions and computational energy available to agents in reinforcement learning environments. Our experiments demonstrate that existing reinforcement learning algorithms struggle within this framework, leading to either failure or suboptimal performance. To address this, we introduce a biologically inspired, temporally layered architecture (TLA), enabling agents to manage computational costs through two layers with distinct timescales and energy requirements. TLA achieves optimal performance in decision-bounded environments and in continuous control environments, matching state-of-the-art performance while using a fraction of the computing cost. Compared to current reinforcement learning algorithms that solely prioritize performance, our approach significantly lowers computational energy expenditure while maintaining performance. These findings establish a benchmark and pave the way for future research on energy and time-aware control.
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Affiliation(s)
- Devdhar Patel
- Manning College of Information and Computer Science, University of Massachusetts, Amherst, MA 01003, U.S.A.
| | - Terrence Sejnowski
- Computational Neurobiology Laboratory, Salk Institute for Biological Studies, La Jolla, CA 92037, U.S.A
- Institute for Neural Computation and Department of Neurobiology, University of California, San Diego, La Jolla, CA 92093, U.S.A.
| | - Hava Siegelmann
- Manning College of Information and Computer Science, University of Massachusetts, Amherst, MA 01003, U.S.A.
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Wang B, Audette NJ, Schneider DM, Aljadeff J. Desegregation of neuronal predictive processing. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.08.05.606684. [PMID: 39149380 PMCID: PMC11326200 DOI: 10.1101/2024.08.05.606684] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 08/17/2024]
Abstract
Neural circuits construct internal 'world-models' to guide behavior. The predictive processing framework posits that neural activity signaling sensory predictions and concurrently computing prediction-errors is a signature of those internal models. Here, to understand how the brain generates predictions for complex sensorimotor signals, we investigate the emergence of high-dimensional, multi-modal predictive representations in recurrent networks. We find that robust predictive processing arises in a network with loose excitatory/inhibitory balance. Contrary to previous proposals of functionally specialized cell-types, the network exhibits desegregation of stimulus and prediction-error representations. We confirmed these model predictions by experimentally probing predictive-coding circuits using a rich stimulus-set to violate learned expectations. When constrained by data, our model further reveals and makes concrete testable experimental predictions for the distinct functional roles of excitatory and inhibitory neurons, and of neurons in different layers along a laminar hierarchy, in computing multi-modal predictions. These results together imply that in natural conditions, neural representations of internal models are highly distributed, yet structured to allow flexible readout of behaviorally-relevant information. The generality of our model advances the understanding of computation of internal models across species, by incorporating different types of predictive computations into a unified framework.
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Affiliation(s)
- Bin Wang
- Department of Physics, University of California San Diego, La Jolla, CA, 92093, USA
| | | | - David M Schneider
- Center for Neural Science, New York University, New York, NY 10003, USA
| | - Johnatan Aljadeff
- Department of Neurobiology, University of California San Diego, La Jolla, CA, 92093, USA
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Moore JJ, Genkin A, Tournoy M, Pughe-Sanford JL, de Ruyter van Steveninck RR, Chklovskii DB. The neuron as a direct data-driven controller. Proc Natl Acad Sci U S A 2024; 121:e2311893121. [PMID: 38913890 PMCID: PMC11228465 DOI: 10.1073/pnas.2311893121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2023] [Accepted: 04/12/2024] [Indexed: 06/26/2024] Open
Abstract
In the quest to model neuronal function amid gaps in physiological data, a promising strategy is to develop a normative theory that interprets neuronal physiology as optimizing a computational objective. This study extends current normative models, which primarily optimize prediction, by conceptualizing neurons as optimal feedback controllers. We posit that neurons, especially those beyond early sensory areas, steer their environment toward a specific desired state through their output. This environment comprises both synaptically interlinked neurons and external motor sensory feedback loops, enabling neurons to evaluate the effectiveness of their control via synaptic feedback. To model neurons as biologically feasible controllers which implicitly identify loop dynamics, infer latent states, and optimize control we utilize the contemporary direct data-driven control (DD-DC) framework. Our DD-DC neuron model explains various neurophysiological phenomena: the shift from potentiation to depression in spike-timing-dependent plasticity with its asymmetry, the duration and adaptive nature of feedforward and feedback neuronal filters, the imprecision in spike generation under constant stimulation, and the characteristic operational variability and noise in the brain. Our model presents a significant departure from the traditional, feedforward, instant-response McCulloch-Pitts-Rosenblatt neuron, offering a modern, biologically informed fundamental unit for constructing neural networks.
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Affiliation(s)
- Jason J Moore
- Neuroscience Institute, New York University Grossman School of Medicine, New York City, NY 10016
- Center for Computational Neuroscience, Flatiron Institute, New York City, NY 10010
| | - Alexander Genkin
- Center for Computational Neuroscience, Flatiron Institute, New York City, NY 10010
| | - Magnus Tournoy
- Center for Computational Neuroscience, Flatiron Institute, New York City, NY 10010
| | | | | | - Dmitri B Chklovskii
- Neuroscience Institute, New York University Grossman School of Medicine, New York City, NY 10016
- Center for Computational Neuroscience, Flatiron Institute, New York City, NY 10010
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Greene P, Bastian AJ, Schieber MH, Sarma SV. Optimal reaching subject to computational and physical constraints reveals structure of the sensorimotor control system. Proc Natl Acad Sci U S A 2024; 121:e2319313121. [PMID: 38551834 PMCID: PMC10998569 DOI: 10.1073/pnas.2319313121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2023] [Accepted: 02/13/2024] [Indexed: 04/02/2024] Open
Abstract
Optimal feedback control provides an abstract framework describing the architecture of the sensorimotor system without prescribing implementation details such as what coordinate system to use, how feedback is incorporated, or how to accommodate changing task complexity. We investigate how such details are determined by computational and physical constraints by creating a model of the upper limb sensorimotor system in which all connection weights between neurons, feedback, and muscles are unknown. By optimizing these parameters with respect to an objective function, we find that the model exhibits a preference for an intrinsic (joint angle) coordinate representation of inputs and feedback and learns to calculate a weighted feedforward and feedback error. We further show that complex reaches around obstacles can be achieved by augmenting our model with a path-planner based on via points. The path-planner revealed "avoidance" neurons that encode directions to reach around obstacles and "placement" neurons that make fine-tuned adjustments to via point placement. Our results demonstrate the surprising capability of computationally constrained systems and highlight interesting characteristics of the sensorimotor system.
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Affiliation(s)
- Patrick Greene
- Institute for Computational Medicine, The Johns Hopkins University, Baltimore, MD21218
| | - Amy J. Bastian
- Kennedy Krieger Institute, Department of Neurology, The Johns Hopkins University School of Medicine, Baltimore, MD21205
| | - Marc H. Schieber
- Department of Neurology, University of Rochester, Rochester, NY14642
| | - Sridevi V. Sarma
- Institute for Computational Medicine, The Johns Hopkins University, Baltimore, MD21218
- Department of Biomedical Engineering, The Johns Hopkins University School of Medicine & Whiting School of Engineering, Baltimore, MD21218
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Kuzmina E, Kriukov D, Lebedev M. Neuronal travelling waves explain rotational dynamics in experimental datasets and modelling. Sci Rep 2024; 14:3566. [PMID: 38347042 PMCID: PMC10861525 DOI: 10.1038/s41598-024-53907-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2023] [Accepted: 02/06/2024] [Indexed: 02/15/2024] Open
Abstract
Spatiotemporal properties of neuronal population activity in cortical motor areas have been subjects of experimental and theoretical investigations, generating numerous interpretations regarding mechanisms for preparing and executing limb movements. Two competing models, representational and dynamical, strive to explain the relationship between movement parameters and neuronal activity. A dynamical model uses the jPCA method that holistically characterizes oscillatory activity in neuron populations by maximizing the data rotational dynamics. Different rotational dynamics interpretations revealed by the jPCA approach have been proposed. Yet, the nature of such dynamics remains poorly understood. We comprehensively analyzed several neuronal-population datasets and found rotational dynamics consistently accounted for by a traveling wave pattern. For quantifying rotation strength, we developed a complex-valued measure, the gyration number. Additionally, we identified parameters influencing rotation extent in the data. Our findings suggest that rotational dynamics and traveling waves are typically the same phenomena, so reevaluation of the previous interpretations where they were considered separate entities is needed.
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Affiliation(s)
- Ekaterina Kuzmina
- Skolkovo Institute of Science and Technology, Vladimir Zelman Center for Neurobiology and Brain Rehabilitation, Moscow, Russia, 121205.
- Artificial Intelligence Research Institute (AIRI), Moscow, Russia.
| | - Dmitrii Kriukov
- Artificial Intelligence Research Institute (AIRI), Moscow, Russia
- Skolkovo Institute of Science and Technology, Center for Molecular and Cellular Biology, Moscow, Russia, 121205
| | - Mikhail Lebedev
- Faculty of Mechanics and Mathematics, Lomonosov Moscow State University, Moscow, Russia, 119992
- Sechenov Institute of Evolutionary Physiology and Biochemistry of the Russian Academy of Sciences, Saint-Petersburg, Russia, 194223
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