Tempo and mode in evolution

Vicious Circle With Venous Hypertension, Irregular Flow, Pathological Venous Wall Remodeling, and Valve Destruction in Chronic Venous Disease: A Review

Substantial advances occurred in phlebological practice in the last two decades. With the use of modern diagnostic equipment, the patients' venous hemodynamics can be examined in detail in everyday practice. Application of venous segments for arterial bypasses motivated studies on the effect of hemodynamic load on the venous wall. New animal models have been developed to study hemodynamic effects on the venous system. In vivo and in vitro studies revealed cellular phase transitions of venous endothelial, smooth muscle, and fibroblastic cells and changes in connective tissue composition, under hemodynamic load and at different locations of the chronically diseased venous system. This review is an attempt to integrate our knowledge from epidemiology, paleoanthropology and anthropology, clinical and experimental hemodynamic studies, histology, cell physiology, cell pathology, and molecular biology on the complex pathomechanism of this frequent disease. Our conclusion is that the disease is initiated by limited genetic adaptation of mankind not to bipedalism but to bipedalism in the unmoving standing or sitting position. In the course of the disease several pathologic vicious circles emerge, sustained venous hypertension inducing cellular phase transitions, chronic wall inflammation, apoptosis of cells, pathologic dilation, and valvular damage which, in turn, further aggravate the venous hypertension.

Speciation of Genes and Genomes: Conservation of DNA Polymorphism by Barriers to Recombination Raised by Mismatch Repair System

Some basic aspects of human and animal biology and evolution involve the establishment of biological uniqueness of species and individuals within their huge variety. The discrimination among closely related species occurs in their offspring at the level of chromosomal DNA sequence homology, which is required for fertility as the hallmark of species. Biological identification of individuals, i.e., of their biological “self”, occurs at the level of protein sequences presented by the MHC/HLA complex as part of the immune system that discriminates non-self from self. Here, a mechanistic molecular model is presented that can explain how DNA sequence divergence and the activity of key mismatch repair proteins, MutS and MutL, lead to 1) genetic separation of closely related species (sympatric speciation) (Fitch and Ayala, Proceedings of the National Academy of Sciences, 1994, 91, 6717–6720), 2) the stability of genomes riddled by diverged repeated sequences, and 3) conservation of highly polymorphic DNA sequence blocks that constitute the immunological self. All three phenomena involve suppression of recombination between diverged homologies, resulting in prevention of gene sharing between closely related genomes (evolution of new species) as well as sequence sharing between closely related genes within a genome (e.g., evolution of immunoglobulin, MHC, and other gene families bearing conserved polymorphisms).

Tempo and Mode in Cultural Macroevolution

Evolutionary scientists studying social and cultural evolution have proposed a multitude of mechanisms by which cultural change can be effected. In this article we discuss two influential ideas from the theory of biological evolution that can inform this debate: the contrast between the micro- and macro-evolution, and the distinction between the tempo and mode of evolution. We add the empirical depth to these ideas by summarizing recent results from the analyses of data on past societies in Seshat: Global History Databank. Our review of these results suggests that the tempo (rates of change, including their acceleration and deceleration) of cultural macroevolution is characterized by periods of apparent stasis interspersed by rapid change. Furthermore, when we focus on large-scale changes in cultural traits of whole groups, the most important macroevolutionary mode involves inter-polity interactions, including competition and warfare, but also cultural exchange and selective imitation; mechanisms that are key components of cultural multilevel selection (CMLS) theory.

Meta-analysis Shows That Rapid Phenotypic Change in Angiosperms in Response to Environmental Change Is Followed by Stasis

The amount and rate of phenotypic change at ecological timescales varies widely, but there has not been a comprehensive quantitative synthesis of the patterns and causes of such variation for plants. Present knowledge is based predominantly on animals, whose differences with plants in the origin of germ cells and the level of modularity (among others) could make it invalid for plants. We synthesized data on contemporary phenotypic responses of angiosperms to environmental change and show that if extinction does not occur, quantitative traits change quickly in the first few years following the environmental novelty and then remain stable. This general pattern is independent from life span, growth form, spatial scale, or the type of trait. Our work shows that high amounts and rates of phenotypic change at contemporary timescales observed in plants are consistent with the pattern of stasis and bounded evolution previously observed over longer time frames. We also found evidence that may contradict some common ideas about phenotypic evolution: (1) the total amount of phenotypic change observed does not differ significantly according to growth form or life span; (2) greater and faster divergence tends to occur between populations connected at the local scale, where gene flow could be intense, rather than between distant populations; and (3) traits closely related to fitness change as much and as fast as other traits.

Evolutionary dynamics of the most populated genotype on rugged fitness landscapes

We consider an asexual population evolving on rugged fitness landscapes which are defined on the multidimensional genotypic space and have many local optima. We track the most populated genotype as it changes when the population jumps from a fitness peak to a better one during the process of adaptation. This is done using the dynamics of the shell model which is a simplified version of the quasispecies model for infinite populations and standard Wright-Fisher dynamics for large finite populations. We show that the population fraction of a genotype obtained within the quasispecies model and the shell model match for fit genotypes and at short times, but the dynamics of the two models are identical for questions related to the most populated genotype. We calculate exactly several properties of the jumps in infinite populations, some of which were obtained numerically in previous works. We also present our preliminary simulation results for finite populations. In particular, we measure the jump distribution in time and find that it decays as t(-2) as in the quasispecies problem.

Convergence rate estimation for the TKF91 model of biological sequence length evolution

The TKF91 model of biological sequence evolution describes changes in the sequence length via an infinite state-space birth-death process, which we term the TKF91-BD process. The TKF91 model assumes that, for any pair of modern sequences, the ancestral sequence has equilibrium length distribution, an assumption whose validity has not been rigorously investigated. We obtain explicit upper and lower bounds on the rate of convergence to equilibrium for the distribution of the TKF91-BD process. We show that the rate of convergence of the TKF91-BD process for protein sequences with parameter values inferred from sequence data on alpha and beta globins is too low to guarantee convergence to equilibrium on a reasonable timescale. For the analyzed nucleotide sequences, the convergence is faster, but the equilibrium sequence length is unrealistically small. The Jukes-Cantor model of nucleotide substitutions can converge considerably faster than the length evolution model for both amino acid and nucleotide sequences, while the speed of convergence for the Kimura model is close to that for the TKF91-BD process describing nucleotide sequences.

Ernst Mayr and the modern concept of species

Ernst Mayr played a central role in the establishment of the general concept of species as metapopulation lineages, and he is the author of one of the most popular of the numerous alternative definitions of the species category. Reconciliation of incompatible species definitions and the development of a unified species concept require rejecting the interpretation of various contingent properties of metapopulation lineages, including intrinsic reproductive isolation in Mayr's definition, as necessary properties of species. On the other hand, the general concept of species as metapopulation lineages advocated by Mayr forms the foundation of this reconciliation, which follows from a corollary of that concept also advocated by Mayr: the proposition that the species is a fundamental category of biological organization. Although the general metapopulation lineage species concept and Mayr's popular species definition are commonly confused under the name "the biological species concept," they are more or less clearly distinguished in Mayr's early writings on the subject. Virtually all modern concepts and definitions of the species category, not only those that require intrinsic reproductive isolation, are to be considered biological according to the criterion proposed by Mayr. Definitions of the species category that identify a particular contingent property of metapopulation lineages (including intrinsic reproductive isolation) as a necessary property of species reduce the number of metapopulation lineages that are to be recognized taxonomically as species, but they cause conflicts among alternative species definitions and compromise the status of the species as a basic category of biological organization.

Assessing the plausibility of life on other worlds

As the field of astrobiology matures and search strategies for life on other worlds are developed, the need to analyze in a systematic way the plausibility for life on other planetary systems becomes increasingly apparent. We propose the adoption of a simple plausibility of life (POL) rating system based on specific criteria. Category I applies to any body shown to have conditions essentially equivalent to those on Earth. Category II applies to bodies for which there is evidence of liquid water and sources of energy and where organic compounds have been detected or can reasonably be inferred (Mars, Europa). Category III applies to worlds where conditions are physically extreme but possibly capable of supporting exotic forms of life unknown on Earth (Titan, Triton). Category IV applies to bodies that could have seen the origin of life prior to the development of conditions so harsh as to make its perseverance at present unlikely but conceivable in isolated habitats (Venus, Io). Category V would be reserved for sites where conditions are so unfavorable for life by any reasonable definition that its origin or persistence there cannot be rated a realistic probability (the Sun, gas giant planets). The proposed system is intended to be generic. It assumes that life is based on polymeric chemistry occurring in a liquid medium with uptake and degradation of energy from the environment. Without any additional specific assumptions about the nature of life, the POL system is universally applicable.