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For: Wathen B, Jia Z. Protein beta-sheet nucleation is driven by local modular formation. J Biol Chem 2010;285:18376-84. [PMID: 20382979 DOI: 10.1074/jbc.m110.120824] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
Number Cited by Other Article(s)
1
Tay NW, Liu F, Wang C, Zhang H, Zhang P, Chen YZ. Protein music of enhanced musicality by music style guided exploration of diverse amino acid properties. Heliyon 2021;7:e07933. [PMID: 34632134 PMCID: PMC8488493 DOI: 10.1016/j.heliyon.2021.e07933] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2021] [Revised: 06/19/2021] [Accepted: 09/02/2021] [Indexed: 11/27/2022]  Open
2
Moretti P, Mariani P, Ortore MG, Plotegher N, Bubacco L, Beltramini M, Spinozzi F. Comprehensive Structural and Thermodynamic Analysis of Prefibrillar WT α-Synuclein and Its G51D, E46K, and A53T Mutants by a Combination of Small-Angle X-ray Scattering and Variational Bayesian Weighting. J Chem Inf Model 2020;60:5265-5281. [PMID: 32866007 PMCID: PMC8154249 DOI: 10.1021/acs.jcim.0c00807] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2020] [Indexed: 12/13/2022]
3
Mura C, Veretnik S, Bourne PE. The Urfold: Structural similarity just above the superfold level? Protein Sci 2019;28:2119-2126. [PMID: 31599042 PMCID: PMC6863707 DOI: 10.1002/pro.3742] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2019] [Revised: 09/30/2019] [Accepted: 10/01/2019] [Indexed: 01/16/2023]
4
Espinoza-Fonseca LM, Kelekar A. High-resolution structural characterization of Noxa, an intrinsically disordered protein, by microsecond molecular dynamics simulations. MOLECULAR BIOSYSTEMS 2016;11:1850-6. [PMID: 25855872 DOI: 10.1039/c5mb00170f] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
5
Madeira PP, Bessa A, Álvares-Ribeiro L, Raquel Aires-Barros M, Rodrigues AE, Uversky VN, Zaslavsky BY. Amino acid/water interactions study: a new amino acid scale. J Biomol Struct Dyn 2013;32:959-68. [PMID: 23781980 DOI: 10.1080/07391102.2013.800994] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
6
Prigozhin MB, Gruebele M. Microsecond folding experiments and simulations: a match is made. Phys Chem Chem Phys 2013;15:3372-88. [PMID: 23361200 PMCID: PMC3632410 DOI: 10.1039/c3cp43992e] [Citation(s) in RCA: 49] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
7
Statistical Analysis of Terminal Extensions of Protein β-Strand Pairs. Adv Bioinformatics 2013;2013:909436. [PMID: 23424587 PMCID: PMC3569888 DOI: 10.1155/2013/909436] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2012] [Revised: 12/30/2012] [Accepted: 12/30/2012] [Indexed: 11/17/2022]  Open
8
Wathen B, Jia Z. A hierarchical order within protein structures underlies large separations between strands in β-sheets. Proteins 2012;81:163-75. [PMID: 22933362 DOI: 10.1002/prot.24173] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2012] [Revised: 08/11/2012] [Accepted: 08/25/2012] [Indexed: 11/12/2022]
9
Zhang N, Feng Y, Gao S, Ruan J, Zhang T. New insights regarding protein folding as learned from beta-sheets. EXCLI JOURNAL 2012;11:543-55. [PMID: 27540347 PMCID: PMC4983712] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/12/2012] [Accepted: 08/22/2012] [Indexed: 10/28/2022]
10
Studies on the rules of β-strand alignment in a protein β-sheet structure. J Theor Biol 2011;285:69-76. [PMID: 21745480 DOI: 10.1016/j.jtbi.2011.06.030] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2011] [Revised: 05/31/2011] [Accepted: 06/24/2011] [Indexed: 11/21/2022]
11
Wathen B, Pratt DA, Jia Z. Hyperconjugation contributes to the bimodal distribution of glycine conformations observed in protein three-dimensional structures. Chembiochem 2011;12:1674-7. [PMID: 21671332 DOI: 10.1002/cbic.201100156] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2011] [Indexed: 11/07/2022]
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