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Jafari A, Seth K, Werner A, Shi S, Hofmann R, Hoyos-Villegas V. Probing Biological Nitrogen Fixation in Legumes Using Raman Spectroscopy. SENSORS (BASEL, SWITZERLAND) 2024; 24:4944. [PMID: 39123990 PMCID: PMC11314804 DOI: 10.3390/s24154944] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/28/2024] [Revised: 07/24/2024] [Accepted: 07/27/2024] [Indexed: 08/12/2024]
Abstract
Biological nitrogen fixation (BNF) by symbiotic bacteria plays a vital role in sustainable agriculture. However, current quantification methods are often expensive and impractical. This study explores the potential of Raman spectroscopy, a non-invasive technique, for rapid assessment of BNF activity in soybeans. Raman spectra were obtained from soybean plants grown with and without rhizobia bacteria to identify spectral signatures associated with BNF. δN15 isotope ratio mass spectrometry (IRMS) was used to determine actual BNF percentages. Partial least squares regression (PLSR) was employed to develop a model for BNF quantification based on Raman spectra. The model explained 80% of the variation in BNF activity. To enhance the model's specificity for BNF detection regardless of nitrogen availability, a subsequent elastic net (Enet) regularisation strategy was implemented. This approach provided insights into key wavenumbers and biochemicals associated with BNF in soybeans.
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Affiliation(s)
| | - Kritarth Seth
- AgResearch, Lincoln 7608, New Zealand; (K.S.); (S.S.)
| | - Armin Werner
- Lincoln Agritech, Lincoln University, Lincoln 7647, New Zealand;
| | - Shengjing Shi
- AgResearch, Lincoln 7608, New Zealand; (K.S.); (S.S.)
| | - Rainer Hofmann
- Plant Biology Department, Lincoln University, Lincoln 7647, New Zealand;
| | - Valerio Hoyos-Villegas
- Faculty of Agricultural and Environmental Sciences, McGill University, Montreal, QC H3A 0G4, Canada;
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Sharma S, Tripathi A, Baran C, Awasthi A, Tiwari A, Sharma S, Jaiswal A, Uttam KN. Monitoring Pigment Dynamics Involved in the Ripening of Sweet Cherries Non-Destructively Using Confocal Micro Raman Spectroscopy. ANAL LETT 2022. [DOI: 10.1080/00032719.2022.2147536] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/02/2022]
Affiliation(s)
- Sweta Sharma
- Saha’s Spectroscopy Laboratory, Department of Physics, University of Allahabad, Prayagraj
- Department of Applied Science and Humanities, Faculty of Engineering and Technology, Khwaja Moinuddin Chishti Language University, Lucknow
| | - Aradhana Tripathi
- Saha’s Spectroscopy Laboratory, Department of Physics, University of Allahabad, Prayagraj
| | - Chhavi Baran
- Centre for Environmental Science, IIDS, University of Allahabad, Prayagraj
| | - Aishwary Awasthi
- Saha’s Spectroscopy Laboratory, Department of Physics, University of Allahabad, Prayagraj
| | - Aparna Tiwari
- Saha’s Spectroscopy Laboratory, Department of Physics, University of Allahabad, Prayagraj
| | - Shristi Sharma
- Saha’s Spectroscopy Laboratory, Department of Physics, University of Allahabad, Prayagraj
| | - Aarti Jaiswal
- Centre for Material Sciences, IIDS, University of Allahabad, Prayagraj
| | - K. N. Uttam
- Saha’s Spectroscopy Laboratory, Department of Physics, University of Allahabad, Prayagraj
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Baran C, Sharma S, Tripathi A, Awasthi A, Jaiswal A, Tandon P, Singh R, Uttam KN. Non-Destructive Monitoring of Ripening Process of the Underutilized Fruit Kadam Using Laser-Induced Fluorescence and Confocal Micro Raman Spectroscopy. ANAL LETT 2022. [DOI: 10.1080/00032719.2022.2137523] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/01/2022]
Affiliation(s)
- Chhavi Baran
- Centre for Environmental Science, IIDS, University of Allahabad, Allahabad, India
| | - Sweta Sharma
- Saha’s Spectroscopy Laboratory, Department of Physics, University of Allahabad, Allahabad, India
- Department of Applied Science and Humanities, Faculty of Engineering and Technology, Khwaja Moinuddin Chishti Language University, Lucknow, India
| | - Aradhana Tripathi
- Saha’s Spectroscopy Laboratory, Department of Physics, University of Allahabad, Allahabad, India
| | - Aishwary Awasthi
- Saha’s Spectroscopy Laboratory, Department of Physics, University of Allahabad, Allahabad, India
| | - Aarti Jaiswal
- Centre for Material Sciences, IIDS, University of Allahabad, Allahabad, India
| | | | - Renu Singh
- School of Humanities and Sciences, Malla Reddy University, Hyderabad, India
| | - K. N. Uttam
- Saha’s Spectroscopy Laboratory, Department of Physics, University of Allahabad, Allahabad, India
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Sharma S, Sharma S, Bharti AS, Tiwari MK, Uttam KN. Non-Destructive Assessment of the Nutrient Profile of Underutilized Seeds Using Spectroscopic Probes. ANAL LETT 2022. [DOI: 10.1080/00032719.2022.2099414] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Affiliation(s)
- Shristi Sharma
- Saha’s Spectroscopy Laboratory, Department of Physics, University of Allahabad, Prayagraj, India
| | - Sweta Sharma
- Saha’s Spectroscopy Laboratory, Department of Physics, University of Allahabad, Prayagraj, India
- Department of Applied Science and Humanities, Faculty of Engineering and Technology, Khwaja Moinuddin Chishti Language University, Lucknow, India
| | - Abhi Sarika Bharti
- Saha’s Spectroscopy Laboratory, Department of Physics, University of Allahabad, Prayagraj, India
| | - M. K. Tiwari
- Indus Utilization Division, Raja Ramanna Centre for Advanced Technology, Indore, India
| | - K. N. Uttam
- Saha’s Spectroscopy Laboratory, Department of Physics, University of Allahabad, Prayagraj, India
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Li X, Yang X, Li X, Zhao Z, Zhang Z, Lin H, Kang D, Shen Y. Nondestructive in situ monitoring of pea seeds germination using optical coherence tomography. PLANT DIRECT 2022; 6:e428. [PMID: 35844779 PMCID: PMC9277031 DOI: 10.1002/pld3.428] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/29/2021] [Revised: 06/15/2022] [Accepted: 06/29/2022] [Indexed: 06/08/2023]
Abstract
Seed germination and uniform plant stand in the field are the most critical crop growth stages determining the final yield. Pea (Pisum sativum L.) seeds production is often hampered due to the seed dormancy caused by the hard seed coat. Such effect is mainly attributed to poor or uneven germination and unsynchronised seedling emergence. Understanding the time course of water intake and several critical germination indicators can reveal many features of seed germination such as rate and uniformity. This paper used optical coherence tomography (OCT), a noninvasive and cross-sectional imaging technique, to monitor the inner structural changes throughout the germination process. A sequence of cross-sectional OCT images of pea (P. sativum L.) seeds, together with additional microscopic optical images, was recorded continuously and in situ for over 40 h. OCT and microscopic images revealed the changes in the internal structure and the external shape of the pea seeds during germination, respectively. It was found that the cross-sectional OCT images helped to identify the critical indicators distinguishing the different phases of germination pea seeds. Therefore, the presented OCT approach offers a fast and nondestructive way to precisely measure the structural indicators in different germination phases.
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Affiliation(s)
- Xinhua Li
- Department of Electrical Engineering and ElectronicsUniversity of LiverpoolLiverpoolUK
| | - Xingyu Yang
- Department of Electrical Engineering and ElectronicsUniversity of LiverpoolLiverpoolUK
| | - Xiaoran Li
- Department of Electrical Engineering and ElectronicsUniversity of LiverpoolLiverpoolUK
| | - Zhiyi Zhao
- Department of Electrical Engineering and ElectronicsUniversity of LiverpoolLiverpoolUK
| | - Zijian Zhang
- Department of Electrical Engineering and ElectronicsUniversity of LiverpoolLiverpoolUK
| | - Hungyen Lin
- Department of EngineeringLancaster UniversityLancasterUK
| | - Dingming Kang
- College of Agronomy and BiotechnologyChina Agricultural UniversityBeijingChina
| | - Yaochun Shen
- Department of Electrical Engineering and ElectronicsUniversity of LiverpoolLiverpoolUK
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