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Ait Elmachkouri Y, Irrou E, Thiruvalluvar AA, Anouar EH, Varadharajan V, Ouachtak H, Mague JT, Sebbar NK, Essassi EM, Labd Taha M. Synthesis, crystal structure, spectroscopic characterization, DFT calculations, Hirshfeld surface analysis, molecular docking, and molecular dynamics simulation investigations of novel pyrazolopyranopyrimidine derivatives. J Biomol Struct Dyn 2023; 42:12195-12213. [PMID: 37817543 DOI: 10.1080/07391102.2023.2268187] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2023] [Accepted: 10/03/2023] [Indexed: 10/12/2023]
Abstract
A series of new pyrazolopyranopyrimidine derivatives (3-9) were synthesized from 5-amino-2,4-dihydro-3-methyl-4-phenylpyrano-[2,3-c]pyrazole-5-carbonitrile (2) by multicomponent reactions (MCR) involving malononitrile, benzaldehyde, and pyrazolone under refluxing ethanol in the presence of piperidine. Compound (2) was then converted to 2-acetylpyrazolopyranopyrimidine (3) through a reaction with acetic anhydride. The deprotection of 3 using ammonium hydroxide in ethanol, leads to 4. Subsequent chlorination of 4 by phosphorus oxychloride affords 5 which was alkylated using methyl iodide and ethyl bromoacetate in DMF, leading to regioisomers 6-9. The products were characterized by spectroscopic techniques (1H and 13C NMR) and confirmed by single crystal X-ray diffraction (XRD) studies for 2, 5, 6, and 9. Moreover, the geometrical parameters, molecular orbital calculations, and spectral data of 2, 5, 6, and 9 were compared by DFT at the B3LYP/6-311G(d,p) level of theory. There is good agreement between the calculated results and the experimental data. The intermolecular contacts for 2, 5, 6, and 9 were studied by Hirshfeld surface analysis. In addition, the molecular docky study was conducted to investigate the binding patterns of 2, 5, 6, and 9 within the binding site of cyclin-dependent kinase 2 (CDK2) and penicillin-binding protein 1 A. After the docking process, molecular dynamics (MD) simulations for 100 ns were performed on CDK2 and PBP 1 A proteins in the complex with 5.Communicated by Ramaswamy H. Sarma.
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Affiliation(s)
- Younesse Ait Elmachkouri
- Laboratory of Organic and Physical Chemistry, Applied Bioorganic Chemistry Team, Faculty of Sciences, Ibnou Zohr University, Agadir, Morocco
| | - Ezaddine Irrou
- Laboratory of Organic and Physical Chemistry, Applied Bioorganic Chemistry Team, Faculty of Sciences, Ibnou Zohr University, Agadir, Morocco
| | | | - El Hassane Anouar
- Department of Chemistry, College of Science and Humanities in Al-Kharj, Prince Sattam Bin Abdulaziz University, Al-Kharj, Saudi Arabia
| | | | - Hassan Ouachtak
- Laboratory of Organic and Physical Chemistry, Applied Bioorganic Chemistry Team, Faculty of Sciences, Ibnou Zohr University, Agadir, Morocco
| | - Joel T Mague
- Department of Chemistry, Tulane University, New Orleans, LA, USA
| | - Nada Kheira Sebbar
- Laboratory of Organic and Physical Chemistry, Applied Bioorganic Chemistry Team, Faculty of Sciences, Ibnou Zohr University, Agadir, Morocco
- Laboratory of Heterocyclic Organic Chemistry, Pharmacochemistry Competence, Center, Drug Science Research Center, Faculty of Sciences, Mohammed V University, Rabat, Morocco
| | - El Mokhtar Essassi
- Laboratory of Heterocyclic Organic Chemistry, Pharmacochemistry Competence, Center, Drug Science Research Center, Faculty of Sciences, Mohammed V University, Rabat, Morocco
| | - Mohamed Labd Taha
- Laboratory of Organic and Physical Chemistry, Applied Bioorganic Chemistry Team, Faculty of Sciences, Ibnou Zohr University, Agadir, Morocco
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Fallah-Mehrjardi M, Zare M. Preparation and Characterization of Bifunctional PEG/en Nanomagnetic Phase-Transfer Catalyst: Green Synthesis of 2-Amino-3-Cyano-4H-Pyrans. Polycycl Aromat Compd 2022. [DOI: 10.1080/10406638.2022.2136219] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/31/2022]
Affiliation(s)
- Mehdi Fallah-Mehrjardi
- Department of Chemistry, Payame Noor University (PNU), Tehran, Iran
- Research Center of Environmental Chemistry, Payame Noor University (PNU), Ardakan, Iran
| | - Maryam Zare
- Department of Chemistry, Payame Noor University (PNU), Tehran, Iran
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Neamani S, Moradi L. Loading of g-C 3 N 4 on Core-Shell Magnetic Mesoporous Silica Nanospheres as a Solid Base Catalyst for the Green Synthesis of some Chromene Derivatives under Different Conditions. ChemistryOpen 2022; 11:e202200041. [PMID: 35778825 PMCID: PMC9278101 DOI: 10.1002/open.202200041] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2022] [Revised: 05/01/2022] [Indexed: 11/17/2022] Open
Abstract
Using heterogeneous basic catalysts has a great importance in chemical reactions because of their advantages (such as easy separation and thermal stability at harsh conditions) over homogeneous catalysts. In this study, magnetic mesoporous silica nanoparticles (mSiO2 ) containing graphitic carbon nitride layers (mSiO2 /g-C3 N4 (x)) were fabricated through a facile process (x signifies the amount of melamine applied during synthesis). Graphitic carbon nitride layers were decorated on mSiO2 by calcination of immobilized melamine (as graphitic carbon nitride precursor) on mSiO2 in the last step of catalyst synthesis. The structure of the prepared catalysts was confirmed using XRD, BET, FESEM, EDX, elemental mapping and TEM methods. The catalytic efficiency of the so-obtained solid base composite was investigated for the synthesis of some dihydropyranochromenes and spiro-dihydropyranochromenes under thermal and microwave conditions. Using mSiO2 /g-C3 N4 (x) led to high yields under green conditions and in short reaction times and without a decrease in catalytic activity after four consecutive cycles.
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Affiliation(s)
- Shekofeh Neamani
- Department of Organic ChemistryFaculty of ChemistryUniversity of KashanP.O. Box 8731753153Kashan, I. R.Iran
| | - Leila Moradi
- Department of Organic ChemistryFaculty of ChemistryUniversity of KashanP.O. Box 8731753153Kashan, I. R.Iran
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