1
|
Pietrzak A, Wojciechowski J, Nowak P, Gacki M, Ochocki J, Wolf WM. Ambiguous Faces of Water-Based Inclusion Compounds: L4(4)8(8) Intercalato-Clathrate Hydrate of Pt(II) Complex. Chemistry 2024:e202303483. [PMID: 38656538 DOI: 10.1002/chem.202303483] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/23/2023] [Revised: 04/10/2024] [Accepted: 04/24/2024] [Indexed: 04/26/2024]
Abstract
Clathrate hydrates are among the most intensively studied H-bond inclusion compounds. Despite the broad definition for this class of compounds, their meaning commonly refers to closed polyhedral nanocages that encapsulate small guest molecules. On the other hand, larger solutes enforce another type of encapsulation because of the solute size effect. Herein, we report a series of structures containing various molecules encapsulated by intercalated water layers constructed of polycyclic moieties of L4(4)8(8) topology. We parametrized the corrugation of individual layers and characterized interactions governing their formation. We suggested that these could be categorized as two-dimensional clathrates based on the character of intra-layer interactions and the effects observed between entrapped molecules and water-based intercalators.
Collapse
Affiliation(s)
- Anna Pietrzak
- Institute of General and Ecological Chemistry, Faculty of Chemistry, Łódź University of Technology, Żeromskiego 116, 90-924, Łódź, Poland
| | | | - Przemysław Nowak
- Centre of Molecular and Macromolecular Studies, Polish Academy of Sciences, Sienkiewicza 112, 90-363, Łódź, Poland
- Bio-Med-Chem Doctoral School of University of Lodz and Lodz Institutes of the Polish Academy of Sciences, University of Łódź, Matejki 21/23, 90-237, Łódź, Poland
| | - Michał Gacki
- Institute of General and Ecological Chemistry, Faculty of Chemistry, Łódź University of Technology, Żeromskiego 116, 90-924, Łódź, Poland
| | - Justyn Ochocki
- Department of Bioinorganic Chemistry, Medical University of Łódź, Muszyńskiego 1, 90-151, Łódź, Poland
| | - Wojciech M Wolf
- Institute of General and Ecological Chemistry, Faculty of Chemistry, Łódź University of Technology, Żeromskiego 116, 90-924, Łódź, Poland
| |
Collapse
|
2
|
Niedbała P, Ceborska M, Mehmet M, Ignacak W, Jurczak J, Dąbrowa K. Anion Recognition by a Pincer-Type Host Constructed from Two Polyamide Macrocyclic Frameworks Jointed by a Photo-Addressable Azobenzene Switch. MATERIALS (BASEL, SWITZERLAND) 2022; 15:692. [PMID: 35057408 PMCID: PMC8777895 DOI: 10.3390/ma15020692] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/19/2021] [Revised: 01/04/2022] [Accepted: 01/10/2022] [Indexed: 12/10/2022]
Abstract
A sterically crowded light-responsive host 1 was synthetized with a 93% yield by applying a post-functionalization protocol utilizing the double amidation of 4,4'-azodibenzoyl dichloride with a readily available 26-membered macrocyclic amine. X-ray structures of two hydrates of trans-1 demonstrate a very different alignment of the azobenzene linkage, which is involved in T-shape or parallel-displaced π⋯π stacking interactions with the pyridine-2,6-dicarboxamide moieties from the macrocyclic backbone. Despite the rigidity of the macrocyclic framework, which generates a large steric hindrance around the azobenzene chromophore, the host 1 retains the ability to undergo a reversible cis⟷trans isomerization upon irradiation with UVA (368 nm) and blue (410 nm) light. Moreover, thermal cis→trans back-isomerization (ΔG0 = 106.5 kJ∙mol-1, t½ = 141 h) is markedly slowed down as compared to the non-macrocyclic analog. 1H NMR titration experiments in DMSO-d6/0.5% water solution reveal that trans-1 exhibits a strong preference for dihydrogenphosphate (H2PO4-) over other anions (Cl-, MeCO2-, and PhCO2-), whereas the photogenerated metastable cis-1 shows lower affinity for the H2PO4- anion.
Collapse
Affiliation(s)
- Patryk Niedbała
- Institute of Organic Chemistry, Polish Academy of Sciences, 01-224 Warsaw, Poland; (P.N.); (M.M.); (W.I.)
| | - Magdalena Ceborska
- Institute of Physical Chemistry, Polish Academy of Sciences, 01-224 Warsaw, Poland;
| | - Mart Mehmet
- Institute of Organic Chemistry, Polish Academy of Sciences, 01-224 Warsaw, Poland; (P.N.); (M.M.); (W.I.)
| | - Wiktor Ignacak
- Institute of Organic Chemistry, Polish Academy of Sciences, 01-224 Warsaw, Poland; (P.N.); (M.M.); (W.I.)
| | - Janusz Jurczak
- Institute of Organic Chemistry, Polish Academy of Sciences, 01-224 Warsaw, Poland; (P.N.); (M.M.); (W.I.)
| | - Kajetan Dąbrowa
- Institute of Organic Chemistry, Polish Academy of Sciences, 01-224 Warsaw, Poland; (P.N.); (M.M.); (W.I.)
| |
Collapse
|
3
|
Stabilization of Near Identical Hydrogen Bonded Octameric Water Clusters in Crystal Structures of Three Distinct Non-Charged Polyamide Macrocyclic Host Molecules. Molecules 2021; 26:molecules26092787. [PMID: 34065060 PMCID: PMC8125911 DOI: 10.3390/molecules26092787] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2021] [Revised: 04/27/2021] [Accepted: 05/06/2021] [Indexed: 11/16/2022] Open
Abstract
In this paper, we present a comparative analysis of the solid state structures of three well-resolved hydrates of macrocyclic host molecules 1a, 1b, and 2 containing an intrannular amide-aryl substituent (lariat arm) connected to a fixed 26-membered ring in a normal (-NHCOAr, hosts 1a and 1b) or reverse manner (-CONHAr, host 2). Despite different chemical structures, these hosts crystallize as isostructural tetrahydrates in the same P-1 space group. Moreover, their crystals exhibit identical hydrogen bond motifs resulting in a stabilization of an almost identical unusual octameric water cluster built from the cyclic tetramer core and four water molecules, attached sequentially in an "up-and-down" manner. Further analysis reveals that, among the series, the structure of host 2 provides the most suitable environment for the accommodation of this type of water cluster.
Collapse
|
4
|
Dąbrowa K, Lindner M, Tyszka-Gumkowska A, Jurczak J. Imino-thiolate-templated synthesis of a chloride-selective neutral macrocyclic host with a specific “turn-off–on” fluorescence response for hypochlorite (ClO −). Org Chem Front 2021. [DOI: 10.1039/d1qo00504a] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
A precise replacement of one oxygen atom with sulfur allowed a novel thioimidate anion-templated macrocyclization to form a crowded host 2 with the ability to act as a highly selective and sensitive fluorescence probe for hypochlorite (ClO−).
Collapse
Affiliation(s)
- Kajetan Dąbrowa
- Institute of Organic Chemistry Polish Academy of Sciences, 01-224 Warsaw, Poland
| | - Marcin Lindner
- Institute of Organic Chemistry Polish Academy of Sciences, 01-224 Warsaw, Poland
| | | | - Janusz Jurczak
- Institute of Organic Chemistry Polish Academy of Sciences, 01-224 Warsaw, Poland
| |
Collapse
|
5
|
Dąbrowa K, Niedbała P, Pawlak M, Lindner M, Ignacak W, Jurczak J. Tuning Anion-Binding Properties of 22-Membered Unclosed Cryptands by Structural Modification of the Lariat Arm. ACS OMEGA 2020; 5:29601-29608. [PMID: 33225192 PMCID: PMC7676298 DOI: 10.1021/acsomega.0c04660] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/22/2020] [Accepted: 10/21/2020] [Indexed: 05/03/2023]
Abstract
A series of 22-membered unclosed cryptands end-capped with intra-annular methyl (1), phenyl (2), p-tert-butylphenyl (3), and p-nitrophenyl (4) amide substituents (lariat arm) were synthesized to elucidate the effect of steric and electronic factors on their anion recognition behavior. The 1H NMR titrations in DMSO-d 6 with 0.5% water reveal enhanced selectivity for H2PO4 - vs Cl- and PhCO2 -. The para-attachment of the electron-withdrawing nitro group (-NO2 vs -H and -t-Bu) was found to increase anion-binding affinity, whereas the steric bulkiness of lariat arm (methyl vs aryl) has a marginal effect. DFT calculations reveal that binding of H2PO4 - is associated with minimal conformational change in the lariat arm moiety and involve four hydrogen bond acceptor and one donor sites of host.
Collapse
|
6
|
Kumar S, Khullar S, Mandal SK. Steric Effect of a Capping Ligand on the Formation of Supramolecular Coordination Networks of Ni(II): Solid-State Entrapment of Cyclic Water Dimer. ACS OMEGA 2020; 5:21873-21882. [PMID: 32905340 PMCID: PMC7469418 DOI: 10.1021/acsomega.0c03065] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/25/2020] [Accepted: 07/28/2020] [Indexed: 05/10/2023]
Abstract
Supramolecular dimer of water is the simplest of the small water clusters [(H2O) n , n = 2-10]. During the course of our work on supramolecular coordination networks of three-component systems (divalent metal ion, tridentate capping ligand, and ditopic carboxylate linker), a cyclic water dimer is found to be entrapped in the network of [Ni2(6-Mebpta)2(adc)2]·2H2O (1) (6-Mebpta = 2-methyl-N-((6-methylpyridin-2-yl)methyl)-N-(pyridin-2-ylmethyl)propan-2-amine and adc = acetylenedicarboxylate). Based on the single-crystal structure of 1, the water dimer plays an important role in connecting the bis(adc) bridged dinickel synthons to form a one-dimensional (1D) supramolecular network. To emphasize the role of 6-Mebpta in the judicious choice of components for 1, one simple modification to it by having another methyl group in the second pendant pyridyl group to make 6,6'-Me2bpta (2-methyl-N,N-bis((6-methylpyridin-2-yl)methyl)propan-2-amine) did not allow the formation of any water cluster in [Ni(6,6'-Me2bpta)(adc)(H2O)]·H2O (2), where a different coordination environment around Ni(II) is also observed. Further quantification of the difference in supramolecular interactions observed in 1 and 2 has been assessed by Hirshfeld surface analysis. Both 1 and 2 are obtained in good yields at room temperature (methanol as solvent) and are further characterized by elemental analysis, Fourier transform infrared (FTIR) and Raman spectroscopy, powder X-ray diffraction, and thermogravimetric analysis.
Collapse
Affiliation(s)
- Sandeep Kumar
- Department
of Chemical Sciences, Indian Institute of
Science Education and Research Mohali, Sector 81, Manauli PO, S.A.S. Nagar, Mohali, Punjab 140306, India
| | - Sadhika Khullar
- Department
of Chemistry, Dr B R Ambedkar National Institute
of Technology Jalandhar, G.T. Road, Amritsar Bypass, Jalandhar, Punjab 144011, India
| | - Sanjay K. Mandal
- Department
of Chemical Sciences, Indian Institute of
Science Education and Research Mohali, Sector 81, Manauli PO, S.A.S. Nagar, Mohali, Punjab 140306, India
| |
Collapse
|
7
|
Meng F, Zhang X, Sarma T, Yuan N, Yin Y, Duan Z, Lei C, Qian Q, Ding L, Zhang Z. A poly(pyridine–pyrrole) foldamer that binds isolated water molecules. CrystEngComm 2019. [DOI: 10.1039/c9ce00582j] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Abstract
A poly(pyridine–pyrrole) foldamer binding isolated water molecules were designed, synthesized and characterized.
Collapse
|
8
|
Jurczak J, Sobczuk A, Da Browa K, Lindner M, Niedbała P. An Indirect Synthetic Approach toward Conformationally Constrained 20-Membered Unclosed Cryptands via Late-Stage Installation of Intraannular Substituents. J Org Chem 2018; 83:13560-13567. [PMID: 30351944 DOI: 10.1021/acs.joc.8b02160] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
A new protocol for PTC-mediated O-alkylation of the intraannular position of 20-membered unclosed cryptands (UCs) is reported. In contrast to the classical, "direct" strategy, which requires functionalization of the lariat arm at the beginning of synthesis, this "indirect" approach enables the late-stage introduction of various benzylic substituents after an unfavorable macrocyclization step (11 examples, yields up to 98%). Notably, this method permits preparation of, previously inaccessible, crowded UCs bearing 1-acetylpyrene substituent and dimer joined by p-xylene linker.
Collapse
Affiliation(s)
- Janusz Jurczak
- Institute of Organic Chemistry , Polish Academy of Sciences , Kasprzaka 44/52 , 01-224 Warsaw , Poland
| | - Adam Sobczuk
- Institute of Organic Chemistry , Polish Academy of Sciences , Kasprzaka 44/52 , 01-224 Warsaw , Poland
| | - Kajetan Da Browa
- Institute of Organic Chemistry , Polish Academy of Sciences , Kasprzaka 44/52 , 01-224 Warsaw , Poland
| | - Marcin Lindner
- Institute of Organic Chemistry , Polish Academy of Sciences , Kasprzaka 44/52 , 01-224 Warsaw , Poland
| | - Patryk Niedbała
- Institute of Organic Chemistry , Polish Academy of Sciences , Kasprzaka 44/52 , 01-224 Warsaw , Poland
| |
Collapse
|