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Tremble K, Henkel T, Bradshaw A, Domnauer C, Brown LM, Thám LX, Furci G, Aime MC, Moncalvo JM, Dentinger B. A revised phylogeny of Boletaceae using whole genome sequences. Mycologia 2024; 116:392-408. [PMID: 38551379 DOI: 10.1080/00275514.2024.2314963] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2023] [Accepted: 01/30/2024] [Indexed: 05/01/2024]
Abstract
The porcini mushroom family Boletaceae is a diverse, widespread group of ectomycorrhizal (ECM) mushroom-forming fungi that so far has eluded intrafamilial phylogenetic resolution based on morphology and multilocus data sets. In this study, we present a genome-wide molecular data set of 1764 single-copy gene families from a global sampling of 418 Boletaceae specimens. The resulting phylogenetic analysis has strong statistical support for most branches of the tree, including the first statistically robust backbone. The enigmatic Phylloboletellus chloephorus from non-ECM Argentinian subtropical forests was recovered as a new subfamily sister to the core Boletaceae. Time-calibrated branch lengths estimate that the family first arose in the early to mid-Cretaceous and underwent a rapid radiation in the Eocene, possibly when the ECM nutritional mode arose with the emergence and diversification of ECM angiosperms. Biogeographic reconstructions reveal a complex history of vicariance and episodic long-distance dispersal correlated with historical geologic events, including Gondwanan origins and inferred vicariance associated with its disarticulation. Together, this study represents the most comprehensively sampled, data-rich molecular phylogeny of the Boletaceae to date, establishing a foundation for future robust inferences of biogeography in the group.
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Affiliation(s)
- Keaton Tremble
- Natural History Museum of Utah and School of Biological Sciences, University of Utah, Salt Lake City, Utah 84108, USA
| | - Terry Henkel
- Department of Biological Sciences, California State Polytechnic University, Humboldt, Arcata 95521, California
| | - Alexander Bradshaw
- Natural History Museum of Utah and School of Biological Sciences, University of Utah, Salt Lake City, Utah 84108, USA
| | - Colin Domnauer
- Natural History Museum of Utah and School of Biological Sciences, University of Utah, Salt Lake City, Utah 84108, USA
| | - Lyda M Brown
- Natural History Museum of Utah and School of Biological Sciences, University of Utah, Salt Lake City, Utah 84108, USA
| | - Lê Xuân Thám
- Laboratory for Computation and Applications in Life Sciences, Institute for Computation Science and Artificial Intelligence, Van Lang University, Ho Chi Minh City 700000, Viet Nam
- Faculty of Applied Technology, School of Technology, Van Lang University, Ho Chi Minh City 700000, Viet Nam
| | | | - M Catherine Aime
- Department of Botany and Plant Pathology, Purdue University, West Lafayette, Indiana 47906, USA
| | - Jean-Marc Moncalvo
- Department of Natural History, Royal Ontario Museum and Department of Ecology and Evolutionary Biology, University of Toronto, Toronto, Ontario M5S 2C6, Canada
| | - Bryn Dentinger
- Natural History Museum of Utah and School of Biological Sciences, University of Utah, Salt Lake City, Utah 84108, USA
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2
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Magnago AC, Alves-Silva G, Henkel TW, da Silveira RMB. New genera, species, and combinations of Boletaceae from Brazil and Guyana. Mycologia 2022; 114:1-19. [PMID: 35452350 DOI: 10.1080/00275514.2022.2037307] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2021] [Accepted: 01/31/2022] [Indexed: 10/18/2022]
Abstract
Brasilioporus olivaceoflavidus, gen. et sp. nov., Brasilioporus simoniarum, sp. nov., Neotropicomus australis, gen. et sp. nov., and Nevesoporus nigrostipitatus, gen. et sp. nov. (Boletaceae, Boletales, Basidiomycota), are described from the endangered Atlantic Forest biome of eastern Brazil. New combinations into these new genera are proposed for the Guyanese taxa Xerocomus parvogracilis, Tylopilus rufonigricans, and Tylopilus exiguus. Boletaceae subfamily Chalciporoideae was recircumscribed to include the new genus Nevesoporus. Molecular phylogenetic analyses using a multilocus data set (ITS+28S+TEF1+RPB1+RPB2) from a large taxon set across the Boletaceae justify recognition of the new genera. Morphological, ecological, and DNA sequence data are provided for the new species. A key to known native and introduced bolete species from the Brazilian Atlantic Forest is provided.
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Affiliation(s)
- Altielys Casale Magnago
- Departamento de Botânica, Universidade Federal do Espírito Santo, Campus Goiabeiras, Vitória, 29075-910, Brazil
- Departamento de Botânica, Instituto de Biociências, Universidade Federal do Rio Grande do Sul, Campus do Vale, Porto Alegre, 91509-900, Brazil
| | - Genivaldo Alves-Silva
- Departamento de Botânica, Instituto de Biociências, Universidade Federal do Rio Grande do Sul, Campus do Vale, Porto Alegre, 91509-900, Brazil
- MIND.Funga (Monitoring and Inventorying Neotropical Diversity of Fungi), Universidade Federal de Santa Catarina, Florianópolis, 88040-900, Brazil
- Departamento de Botânica, Centro de Ciências Biológicas, Universidade Federal de Santa Catarina, Campus Reitor João David Ferreira Lima, Florianópolis, 88040-900, Brazil
| | - Terry W Henkel
- Department of Biological Sciences, Humboldt State University, Arcata, California 95521, USA
| | - Rosa Mara Borges da Silveira
- Departamento de Botânica, Instituto de Biociências, Universidade Federal do Rio Grande do Sul, Campus do Vale, Porto Alegre, 91509-900, Brazil
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Vadthanarat S, Halling RE, Amalfi M, Lumyong S, Raspé O. An Unexpectedly High Number of New Sutorius (Boletaceae) Species From Northern and Northeastern Thailand. Front Microbiol 2021; 12:643505. [PMID: 33912149 PMCID: PMC8072293 DOI: 10.3389/fmicb.2021.643505] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2020] [Accepted: 03/08/2021] [Indexed: 11/13/2022] Open
Abstract
Sutorius is a poroid genus in Boletaceae that typically has chocolate brown to reddish brown or purplish brown basidiomata with a finely scaly stipe and produces a reddish brown spore deposit. During the survey on diversity of boletes in Northern and Northeastern Thailand, several Sutorius collections were obtained. Combined evidence from morphology and phylogenetic analyses of a combined three-gene data set (atp6, tef1 and rpb2) of the Sutorius collections along with selected Boletaceae in the Pulveroboletus group indicated that Thai collections represent seven new Sutorius species. The analyses also indicated that Tylopilus maculatoides belongs in Sutorius. Therefore, the transfer of T. maculatoides to Sutorius is proposed. Full descriptions and illustrations of the seven new species and S. maculatoides are presented in this study. With the seven new species and the new combination, eight of the eleven described Sutorius species are known to occur in Northern and Northeastern Thailand, whereas only one species is known from each of two continents, the Americas and Australia.
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Affiliation(s)
- Santhiti Vadthanarat
- Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai, Thailand.,Research Center of Microbial Diversity and Sustainable Utilization, Faculty of Science, Chiang Mai University, Chiang Mai, Thailand
| | - Roy E Halling
- Institute of Systematic Botany, New York Botanical Garden, Bronx, NY, United States
| | - Mario Amalfi
- Botanic Garden Meise, Meise, Belgium.,Fédération Wallonie-Bruxelles, Service Général de l'Enseignement Universitaire et de la Recherche Scientifique, Bruxelles, Belgium
| | - Saisamorn Lumyong
- Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai, Thailand.,Research Center of Microbial Diversity and Sustainable Utilization, Faculty of Science, Chiang Mai University, Chiang Mai, Thailand.,Academy of Science, The Royal Society of Thailand, Bangkok, Thailand
| | - Olivier Raspé
- School of Science, Mae Fah Luang University, Chiang Rai, Thailand.,Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, Thailand
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Chai H, Liang ZQ, Xue R, Jiang S, Luo SH, Wang Y, Wu LL, Tang LP, Chen Y, Hong D, Zeng NK. New and noteworthy boletes from subtropical and tropical China. MycoKeys 2019:55-96. [PMID: 30846903 PMCID: PMC6401544 DOI: 10.3897/mycokeys.46.31470] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2018] [Accepted: 01/09/2019] [Indexed: 01/05/2023] Open
Abstract
The morphology, ecology, and phylogenetic relationships of specimens of the family Boletaceae from subtropical and tropical China were investigated. Four species, Butyriboletushuangnianlaii, Lanmaoamacrocarpa, Neoboletusmultipunctatus, and Sutoriussubrufus, are new to science. Chalciporusradiatus and Caloboletusxiangtoushanensis are redescribed. Caloboletusguanyui is proposed to replace Boletusquercinus Hongo, an illegitimate later homonym. The recently described Tylopiluscallainus is synonymized with the Japanese Boletusvirescens, and the new combination T.virescens (Har. Takah. & Taneyama) N.K. Zeng et al. is proposed. Moreover, Neoboletus is treated as an independent genus based on evidence from morphology and molecular phylogenetic data in the present study, and many previously described taxa of Sutorius are recombined into Neoboletus: N.ferrugineus (G. Wu et al.) N.K. Zeng et al., N.flavidus (G. Wu & Zhu L. Yang) N.K. Zeng et al., N.hainanensis (T.H. Li & M. Zang) N.K. Zeng et al., N.obscureumbrinus (Hongo) N.K. Zeng et al., N.rubriporus (G. Wu & Zhu L. Yang) N.K. Zeng et al., N.sanguineoides (G. Wu & Zhu L. Yang) N.K. Zeng et al. , N.sanguineus (G. Wu & Zhu L. Yang) N.K. Zeng et al., and N.tomentulosus (M. Zang et al.) N.K. Zeng et al.
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Affiliation(s)
- Hui Chai
- College of Pharmacy-Transgenic Laboratory, Hainan Medical University, Haikou 571199, China Hainan Medical University Haikou China
| | - Zhi-Qun Liang
- College of Materials and Chemistry Engineering, Hainan University, Haikou 570228, China Hainan University Haikou China
| | - Rou Xue
- College of Pharmacy-Transgenic Laboratory, Hainan Medical University, Haikou 571199, China Hainan Medical University Haikou China
| | - Shuai Jiang
- Hainan Yinggeling National Nature Reserve, Baisha, 572800, China Hainan Yinggeling National Nature Reserve Baisha China
| | - Shi-Hong Luo
- College of Bioscience and Biotechnology, Shenyang Agricultural University, Shenyang 110866, China Shenyang Agricultural University Shenyang China
| | - Yong Wang
- College of Pharmacy-Transgenic Laboratory, Hainan Medical University, Haikou 571199, China Hainan Medical University Haikou China
| | - Lu-Ling Wu
- College of Pharmacy-Transgenic Laboratory, Hainan Medical University, Haikou 571199, China Hainan Medical University Haikou China
| | - Li-Ping Tang
- School of Pharmaceutical Sciences and Yunnan Key Laboratory of Pharmacology for Natural Products, Kunming Medical University, Kunming, 650500, China Kunming Medical University Kunming China
| | - Yun Chen
- Hainan Yinggeling National Nature Reserve, Baisha, 572800, China Hainan Yinggeling National Nature Reserve Baisha China
| | - Deng Hong
- College of Pharmacy-Transgenic Laboratory, Hainan Medical University, Haikou 571199, China Hainan Medical University Haikou China
| | - Nian-Kai Zeng
- College of Pharmacy-Transgenic Laboratory, Hainan Medical University, Haikou 571199, China Hainan Medical University Haikou China
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Smith ME, Amses KR, Elliott TF, Obase K, Aime MC, Henkel TW. New sequestrate fungi from Guyana: Jimtrappea guyanensis gen. sp. nov., Castellanea pakaraimophila gen. sp. nov., and Costatisporus cyanescens gen. sp. nov. (Boletaceae, Boletales). IMA Fungus 2015; 6:297-317. [PMID: 26732137 PMCID: PMC4681255 DOI: 10.5598/imafungus.2015.06.02.03] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2015] [Accepted: 09/19/2015] [Indexed: 11/04/2022] Open
Abstract
Jimtrappea guyanensis gen. sp. nov., Castellanea pakaraimophila gen. sp. nov., and Costatisporus cyanescens gen. sp. nov. are described as new to science. These sequestrate, hypogeous fungi were collected in Guyana under closed canopy tropical forests in association with ectomycorrhizal (ECM) host tree genera Dicymbe (Fabaceae subfam. Caesalpinioideae), Aldina (Fabaceae subfam. Papilionoideae), and Pakaraimaea (Dipterocarpaceae). Molecular data place these fungi in Boletaceae (Boletales, Agaricomycetes, Basidiomycota) and inform their relationships to other known epigeous and sequestrate taxa within that family. Macro- and micromorphological characters, habitat, and multi-locus DNA sequence data are provided for each new taxon. Unique morphological features and a molecular phylogenetic analysis of 185 taxa across the order Boletales justify the recognition of the three new genera.
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Affiliation(s)
- Matthew E Smith
- Department of Plant Pathology, University of Florida, Gainesville, FL 32611, USA
| | - Kevin R Amses
- Department of Biological Sciences, Humboldt State University, Arcata, CA 95521, USA
| | - Todd F Elliott
- Department of Integrative Studies, Warren Wilson College, Asheville, NC 28815, USA
| | - Keisuke Obase
- Department of Plant Pathology, University of Florida, Gainesville, FL 32611, USA
| | - M Catherine Aime
- Department of Botany & Plant Pathology, Purdue University, West Lafayette, IN 47907, USA
| | - Terry W Henkel
- Department of Biological Sciences, Humboldt State University, Arcata, CA 95521, USA
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Degagne RS, Henkel TW, Steinberg SJ, Fox III L. IdentifyingDicymbe corymbosaMonodominant Forests in Guyana Using Satellite Imagery. Biotropica 2009. [DOI: 10.1111/j.1744-7429.2008.00446.x] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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