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Huang J, Fu X, Li W, Ni Z, Zhao Y, Zhang P, Wang A, Xiao D, Zhan J, He L. Molecular Cloning, Expression Analysis, and Functional Analysis of Nine IbSWEETs in Ipomoea batatas (L.) Lam. Int J Mol Sci 2023; 24:16615. [PMID: 38068939 PMCID: PMC10706379 DOI: 10.3390/ijms242316615] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2023] [Revised: 11/08/2023] [Accepted: 11/09/2023] [Indexed: 12/18/2023] Open
Abstract
Sugar Will Eventually be Exported Transporter (SWEET) genes play an important regulatory role in plants' growth and development, stress response, and sugar metabolism, but there are few reports on the role of SWEET proteins in sweet potato. In this study, nine IbSWEET genes were obtained via PCR amplification from the cDNA of sweet potato. Phylogenetic analysis showed that nine IbSWEETs separately belong to four clades (Clade I~IV) and contain two MtN3/saliva domains or PQ-loop superfamily and six~seven transmembrane domains. Protein interaction prediction showed that seven SWEETs interact with other proteins, and SWEETs interact with each other (SWEET1 and SWEET12; SWEET2 and SWEET17) to form heterodimers. qRT-PCR analysis showed that IbSWEETs were tissue-specific, and IbSWEET1b was highly expressed during root growth and development. In addition to high expression in leaves, IbSWEET15 was also highly expressed during root expansion, and IbSWEET7, 10a, 10b, and 12 showed higher expression in the leaves. The expression of SWEETs showed a significant positive/negative correlation with the content of soluble sugar and starch in storage roots. Under abiotic stress treatment, IbSWEET7 showed a strong response to PEG treatment, while IbSWEET10a, 10b, and 12 responded significantly to 4 °C treatment and, also, at 1 h after ABA, to NaCl treatment. A yeast mutant complementation assay showed that IbSWEET7 had fructose, mannose, and glucose transport activity; IbSWEET15 had glucose transport activity and weaker sucrose transport activity; and all nine IbSWEETs could transport 2-deoxyglucose. These results provide a basis for further elucidating the functions of SWEET genes and promoting molecular breeding in sweet potato.
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Affiliation(s)
- Jingli Huang
- College of Agriculture, Guangxi University, Nanning 530004, China; (J.H.); (X.F.); (W.L.); (Z.N.); (Y.Z.); (P.Z.); (A.W.); (D.X.); (J.Z.)
- Agricultural and Animal Husbandry Industry Development Research Institute, Guangxi University, Nanning 530004, China
| | - Xuezhen Fu
- College of Agriculture, Guangxi University, Nanning 530004, China; (J.H.); (X.F.); (W.L.); (Z.N.); (Y.Z.); (P.Z.); (A.W.); (D.X.); (J.Z.)
| | - Wenyan Li
- College of Agriculture, Guangxi University, Nanning 530004, China; (J.H.); (X.F.); (W.L.); (Z.N.); (Y.Z.); (P.Z.); (A.W.); (D.X.); (J.Z.)
| | - Zhongwang Ni
- College of Agriculture, Guangxi University, Nanning 530004, China; (J.H.); (X.F.); (W.L.); (Z.N.); (Y.Z.); (P.Z.); (A.W.); (D.X.); (J.Z.)
| | - Yanwen Zhao
- College of Agriculture, Guangxi University, Nanning 530004, China; (J.H.); (X.F.); (W.L.); (Z.N.); (Y.Z.); (P.Z.); (A.W.); (D.X.); (J.Z.)
| | - Pinggang Zhang
- College of Agriculture, Guangxi University, Nanning 530004, China; (J.H.); (X.F.); (W.L.); (Z.N.); (Y.Z.); (P.Z.); (A.W.); (D.X.); (J.Z.)
- Agricultural and Animal Husbandry Industry Development Research Institute, Guangxi University, Nanning 530004, China
| | - Aiqin Wang
- College of Agriculture, Guangxi University, Nanning 530004, China; (J.H.); (X.F.); (W.L.); (Z.N.); (Y.Z.); (P.Z.); (A.W.); (D.X.); (J.Z.)
- Guangxi Key Laboratory of Agro-Environment and Agro-Product Safety, College of Agriculture, Guangxi University, Nanning 530004, China
- Key Laboratory of Crop Cultivation and Tillage, College of Agriculture, Guangxi University, Nanning 530004, China
| | - Dong Xiao
- College of Agriculture, Guangxi University, Nanning 530004, China; (J.H.); (X.F.); (W.L.); (Z.N.); (Y.Z.); (P.Z.); (A.W.); (D.X.); (J.Z.)
- Guangxi Key Laboratory of Agro-Environment and Agro-Product Safety, College of Agriculture, Guangxi University, Nanning 530004, China
- Key Laboratory of Crop Cultivation and Tillage, College of Agriculture, Guangxi University, Nanning 530004, China
| | - Jie Zhan
- College of Agriculture, Guangxi University, Nanning 530004, China; (J.H.); (X.F.); (W.L.); (Z.N.); (Y.Z.); (P.Z.); (A.W.); (D.X.); (J.Z.)
- Guangxi Key Laboratory of Agro-Environment and Agro-Product Safety, College of Agriculture, Guangxi University, Nanning 530004, China
- Key Laboratory of Crop Cultivation and Tillage, College of Agriculture, Guangxi University, Nanning 530004, China
| | - Longfei He
- Agricultural and Animal Husbandry Industry Development Research Institute, Guangxi University, Nanning 530004, China
- Guangxi Key Laboratory of Agro-Environment and Agro-Product Safety, College of Agriculture, Guangxi University, Nanning 530004, China
- Key Laboratory of Crop Cultivation and Tillage, College of Agriculture, Guangxi University, Nanning 530004, China
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Filyushin MA, Anisimova OK, Shchennikova AV, Kochieva EZ. Genome-Wide Identification, Expression, and Response to Fusarium Infection of the SWEET Gene Family in Garlic ( Allium sativum L.). Int J Mol Sci 2023; 24:ijms24087533. [PMID: 37108694 PMCID: PMC10138969 DOI: 10.3390/ijms24087533] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2023] [Revised: 04/17/2023] [Accepted: 04/18/2023] [Indexed: 04/29/2023] Open
Abstract
Proteins of the SWEET (Sugar Will Eventually be Exported Transporters) family play an important role in plant development, adaptation, and stress response by functioning as transmembrane uniporters of soluble sugars. However, the information on the SWEET family in the plants of the Allium genus, which includes many crop species, is lacking. In this study, we performed a genome-wide analysis of garlic (Allium sativum L.) and identified 27 genes putatively encoding clade I-IV SWEET proteins. The promoters of the A. sativum (As) SWEET genes contained hormone- and stress-sensitive elements associated with plant response to phytopathogens. AsSWEET genes had distinct expression patterns in garlic organs. The expression levels and dynamics of clade III AsSWEET3, AsSWEET9, and AsSWEET11 genes significantly differed between Fusarium-resistant and -susceptible garlic cultivars subjected to F. proliferatum infection, suggesting the role of these genes in the garlic defense against the pathogen. Our results provide insights into the role of SWEET sugar uniporters in A. sativum and may be useful for breeding Fusarium-resistant Allium cultivars.
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Affiliation(s)
- Mikhail A Filyushin
- Federal Research Center "Fundamentals of Biotechnology" of the Russian Academy of Sciences, 119071 Moscow, Russia
| | - Olga K Anisimova
- Federal Research Center "Fundamentals of Biotechnology" of the Russian Academy of Sciences, 119071 Moscow, Russia
| | - Anna V Shchennikova
- Federal Research Center "Fundamentals of Biotechnology" of the Russian Academy of Sciences, 119071 Moscow, Russia
| | - Elena Z Kochieva
- Federal Research Center "Fundamentals of Biotechnology" of the Russian Academy of Sciences, 119071 Moscow, Russia
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Ao J, Wang Z, Yang Q, Li B, Li Y, Li Y. Differentially enriched fungal communities in root rot resistant and susceptible varieties of tobacco ( Nicotiana tabacum L.) under continuous monoculture cropping. Front Microbiol 2022; 13:1036091. [PMID: 36569055 PMCID: PMC9768445 DOI: 10.3389/fmicb.2022.1036091] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2022] [Accepted: 11/17/2022] [Indexed: 12/12/2022] Open
Abstract
Root rot is a major disease of tobacco that causes crop losses of up to 15-20% of global tobacco production. The present study aimed to compare the fungal communities, and physicochemical properties of rhizosphere soil of root rot resistant (Yunyan 87; Y) and susceptible (Honghua Dajinyuan; H) tobacco varieties. Four treatments of each variety under continuous monocropping cultures included: control groups (HT0 and YT0); 2 years of continuous cropping (HT2 and YT2); 4 years of continuous cropping (HT4 and YT4); and 8 years of continuous cropping (YT8 and HT8). The soil physicochemical properties including available nitrogen (AN), available phosphorus (AP), available potassium (AK), and organic matter (OM) were increased (p < 0.05) from HT0 to HT8, whereas the resistant variety (Y) showed an inconsistent trend from YT0 to YT8. The pH was decreased (p < 0.05) from HT0 to HT8 and YT0 to YT8. Further, the disease incidence rate and disease index of the H variety also increased (p < 0.05) from HT0 to HT8. Alpha diversity analysis revealed that susceptible variety had higher fungal diversity from HT0 to HT8, while resistant variety exhibited lower diversity from YT0 to YT8. Ascomycota and Mortierellomycota were the dominant phyla in H and Y. Ascomycota abundance was increased (p < 0.05), whereas Mortierellomycota was decreased (p < 0.05) for continuous cropping years in H and Y. Penicillium, Fusarium, and Chrysosporium were the top three abundant genera in both varieties. The relative abundance of Penicillium spp. was increased (p < 0.05) in Y, whereas decreased (p < 0.05) in H variety. Specifically, Chrysosporium spp. was increased (p < 0.05) whereas Fusarium spp. was decreased (p < 0.05) in YT2. Redundancy analysis (RDA) revealed that fungal communities in H and Y rhizospheres were influenced by pH and carbon content, respectively. The top three highly enriched (p < 0.05) pathways in both varieties were fatty acid elongation, fatty acid β-oxidation I, and glyoxylate cycle. Our study concluded that resistant variety exhibited lower fungal diversity and functionally enriched metabolic pathways than susceptible variety that might be the result of molecular breeding practices, however, the relative abundance of Penicillium spp. were increased in resistant variety under long-term monoculture cropping.
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Affiliation(s)
- Jincheng Ao
- College of Plant Protection, Yunnan Agricultural University, Kunming, China,Yunnan Tuer Lanyi Agricultural Technology Co., Ltd., Kunming, China
| | - Zheng Wang
- China Tobacco Guangxi Industrial Co., Ltd., Nanning, China
| | - Qigang Yang
- China Tobacco Guangxi Industrial Co., Ltd., Nanning, China
| | - Bo Li
- College of Plant Protection, Yunnan Agricultural University, Kunming, China
| | - Ying Li
- College of Plant Protection, Yunnan Agricultural University, Kunming, China
| | - Yongmei Li
- College of Plant Protection, Yunnan Agricultural University, Kunming, China,*Correspondence: Yongmei Li,
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Gai X, Li S, Jiang N, Sun Q, Xuan YH, Xia Z. Comparative transcriptome analysis reveals that ATP synthases regulate Fusarium oxysporum virulence by modulating sugar transporter gene expressions in tobacco. FRONTIERS IN PLANT SCIENCE 2022; 13:978951. [PMID: 36061782 PMCID: PMC9433920 DOI: 10.3389/fpls.2022.978951] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/27/2022] [Accepted: 07/28/2022] [Indexed: 06/15/2023]
Abstract
Fusarium oxysporum is a main causative agent of tobacco root rot, severely affecting tobacco growth. Here, 200 F. oxysporum strains were isolated and examined for their virulence toward tobacco plants. These strains were divided into disease class 1-3 (weak virulence), 4-6 (moderate virulence), and 7-9 (strong virulence). To understand the virulence mechanism of F. oxysporum, a comparative transcriptome study was performed using weak, moderate, and strong virulence-inducing strains. The results showed that expression levels of 1,678 tobacco genes were positively correlated with virulence levels, while expression levels of 3,558 genes were negatively associated with virulence levels. Interestingly, the expression levels of ATP synthase genes were positively correlated with F. oxysporum virulence. To verify whether ATP synthase gene expression is associated with F. oxysporum virulence, 5 strains each of strong, moderate, and weak virulence-inducing strains were tested using qRT-PCR. The results confirmed that ATP synthase gene expression is positively correlated with virulence levels. Knock-out mutants of ATP synthase genes resulted in a relatively weak virulence compared to wild-type as well as the inhibition of F. oxysporum-mediated suppression of NtSUC4, NtSTP12, NtHEX6, and NtSWEET, suggesting that ATP synthase activity is also associated with the virulence. Taken together, our analyses show that ATP synthases are key genes for the regulation of F. oxysporum virulence and provide important information for understanding the virulence mechanism of F. oxysporum in tobacco root rot.
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Affiliation(s)
- Xiaotong Gai
- Research Center, Yunnan Academy of Tobacco Agricultural Sciences, Kunming, China
| | - Shuang Li
- College of Life Science, Yan’an University, Yan’an, China
| | - Ning Jiang
- Research Center, Yunnan Academy of Tobacco Agricultural Sciences, Kunming, China
| | - Qian Sun
- College of Plant Protection, Shenyang Agricultural University, Shenyang, China
| | - Yuan Hu Xuan
- College of Plant Protection, Shenyang Agricultural University, Shenyang, China
| | - Zhenyuan Xia
- Research Center, Yunnan Academy of Tobacco Agricultural Sciences, Kunming, China
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