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Liang Y, Fang X, Zheng L, Wu H, He Z, Xiong Z, Hong J, Ai X, Liang G. The complete mitochondrial genome of Choristoneura metasequoiacola Liu,1983 (Lepidoptera: Tortricidae). Mitochondrial DNA B Resour 2023; 8:653-657. [PMID: 37303610 PMCID: PMC10251794 DOI: 10.1080/23802359.2023.2221350] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2022] [Accepted: 05/30/2023] [Indexed: 06/13/2023] Open
Abstract
Choristoneura metasequoiacola Liu, 1983 is an important caterpillar species that specifically infests the leaves and branches of Metasequoia glyptostroboides Hu & W. C. Cheng 1948 with short larval infestations, long-term dormancy, and has a limited distribution in Lichuan, Hubei, China. The complete mitochondria genome of C. metasequoiacola was determined by using Illumina NovaSeq, and analyzed based on previously annotated sibling species. In total, we obtained mitochondria genome with 15,128 bp in length, circular in shape with a double-stranded closed ring structure, including 13 protein-coding genes, 2 rRNA genes, 22 tRNA genes, and an AT-rich region. Of which the nucleotide composition was highly A + T biased, accounting for 81.98% of the whole mitogenome. Thirteen protein-coding genes (PCGs) were 11,142 bp; Twenty-two tRNA genes and AT-rich region were 1,472 and 199 bp, respectively. Phylogenetically, the relationship between Choristoneura spp. (containing C. metasequoiacola) and Adoxophyes spp. was closer than any other two genera from Tortricidae, and the relationship between C. metasequoiacola and C.murinana was the closest among nine sibling species from that genus, which helps to explain species evolution within the family Tortricidae.
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Affiliation(s)
- Yun Liang
- College of Forestry, Fujian Agriculture and Forestry University, Fuzhou, China
- Key Laboratory of Integrated Pest Management in Ecological Forests of Fujian Province Universities, Fujian Agriculture and Forestry University, Fuzhou, China
| | - Xinyuan Fang
- College of Forestry, Fujian Agriculture and Forestry University, Fuzhou, China
- Key Laboratory of Integrated Pest Management in Ecological Forests of Fujian Province Universities, Fujian Agriculture and Forestry University, Fuzhou, China
| | - Lingzhi Zheng
- College of Forestry, Fujian Agriculture and Forestry University, Fuzhou, China
- Key Laboratory of Integrated Pest Management in Ecological Forests of Fujian Province Universities, Fujian Agriculture and Forestry University, Fuzhou, China
| | - Hongmin Wu
- College of Forestry, Fujian Agriculture and Forestry University, Fuzhou, China
- Key Laboratory of Integrated Pest Management in Ecological Forests of Fujian Province Universities, Fujian Agriculture and Forestry University, Fuzhou, China
| | - Zewei He
- Xingdou Mount National Nature Reserve Administration of Hubei, Enshi, China
| | - Zhongwu Xiong
- Xingdou Mount National Nature Reserve Administration of Hubei, Enshi, China
| | - Jianfeng Hong
- Xingdou Mount National Nature Reserve Administration of Hubei, Enshi, China
| | - Xunru Ai
- School of Forestry and Horticulture, Hubei Minzu University, Enshi, China
| | - Guanghong Liang
- College of Forestry, Fujian Agriculture and Forestry University, Fuzhou, China
- Key Laboratory of Integrated Pest Management in Ecological Forests of Fujian Province Universities, Fujian Agriculture and Forestry University, Fuzhou, China
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Jiang HY, Chen SC, Hu X, Wang XQ. Characterization of the complete mitochondrial genome of the tea slug moth, Iragoides fasciata (Lepidoptera: Limacodidae). Mitochondrial DNA B Resour 2022; 7:1545-1547. [PMID: 36046106 PMCID: PMC9423865 DOI: 10.1080/23802359.2022.2110008] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Moths of the family Limacodidae are major pests that damage tea trees, fruit trees, and forests. The complete mitochondrial genome of Iragoides fasciata (Lepidoptera: Limacodidae) was sequenced. The genome was found to be 15,645 bp in size (GenBank accession no. MK250437), including 13 protein-coding genes (PCGs), two ribosomal RNA genes (rRNAs), 22 transfer RNA genes (tRNAs), and a 431 bp A + T-rich region. Nucleotide composition showed a total A + T content of 82.03% with significant AT-bias. All PCGs were found to start with ATN codons and use the canonical stop codons TAA or incomplete T, except for cox1, which was found to utilize CGA as a start codon. Phylogenetic relationships were based on the 13 PCGs with 24 moths, showing that I. fasciata is more closely related to other slug moths in the family Limacodidae.
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Affiliation(s)
- Hong-Yan Jiang
- Tea Research Institute of Chongqing Academy of Agricultural Science, Chongqing, PR China
| | - Shi-Chun Chen
- Tea Research Institute of Chongqing Academy of Agricultural Science, Chongqing, PR China
| | - Xiang Hu
- Tea Research Institute of Chongqing Academy of Agricultural Science, Chongqing, PR China
| | - Xiao-Qing Wang
- Tea Research Institute of Chongqing Academy of Agricultural Science, Chongqing, PR China
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Zhang R, Li J, Geng S, Yang J, Zhang X, An Y, Li C, Cui H, Li X, Wang Y. The first mitochondrial genome for Phaudidae (Lepidoptera) with phylogenetic analyses of Zygaenoidea. Int J Biol Macromol 2020; 149:951-961. [PMID: 32018010 DOI: 10.1016/j.ijbiomac.2020.01.307] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2019] [Revised: 01/17/2020] [Accepted: 01/31/2020] [Indexed: 10/25/2022]
Abstract
Phauda flammans Walker belongs to Phaudidae (Lepidoptera), which is a holometabolous and leaf-eating pest that harms trees. So far, there is no mitochondrial (mt) genome reported of Phaudidae. Herein, we sequenced and annotated the complete mt genome of P. flammans representing the first mt genome of Phaudidae and predicted the secondary structures of its RNAs in this study. This mt genome is 15470 bp long consisting of 13 protein coding genes (PCGs), 22 tRNAs, 2 rRNAs and the control region, which are usually conserved in insects. Most PCGs used the standard ATN start codons and complete TAA/TAG termination codons. Almost all of tRNA genes exhibited cloverleaf secondary structures except that the dihydorouridine (DHU) arm of tRNASer(AGN) was absent. The phylogenetic analyses using both Bayesian inference (BI) and maximum likelihood (ML) methods all supported that Phaudidae was a single family being the sister group to Zygaenidae. More mt genomes are needed to better understand the phylogenetic relationships within Zygaenoidea in the future.
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Affiliation(s)
- Ruyue Zhang
- College of Plant Protection, Hebei Agricultural University, Baoding 071001, PR China
| | - Jing Li
- College of Plant Protection, Hebei Agricultural University, Baoding 071001, PR China
| | - Shuo Geng
- College of Plant Protection, Hebei Agricultural University, Baoding 071001, PR China
| | - Juan Yang
- National Demonstration Center for Experimental Plant Science Education, College of Agriculture, Guangxi University, Nanning 530004, PR China
| | - Xiao Zhang
- Key Lab of Integrated Crop Pest Management of Shandong Province, College of Plant Health and Medicine, Qingdao Agricultural University, Qingdao 266109, PR China
| | - Yuxin An
- College of Plant Protection, Hebei Agricultural University, Baoding 071001, PR China
| | - Cong Li
- College of Plant Protection, Hebei Agricultural University, Baoding 071001, PR China
| | - Haoran Cui
- College of Plant Protection, Hebei Agricultural University, Baoding 071001, PR China
| | - Xiaoying Li
- College of Plant Protection, Hebei Agricultural University, Baoding 071001, PR China
| | - Yuyu Wang
- College of Plant Protection, Hebei Agricultural University, Baoding 071001, PR China.
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Jiang HY, Chen SC, Peng P, Hu X, Lin Q, Yang PX, Wang XQ. The complete mitochondrial genome of a slug moth, Narosa nigrisigna (Lepidoptera: Limacodidae). Mitochondrial DNA B Resour 2019. [DOI: 10.1080/23802359.2018.1536471] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022] Open
Affiliation(s)
- Hong-Yan Jiang
- Tea Research Institute of Chongqing Academy of Agricultural Science, Chongqing, China
| | - Shi-Chun Chen
- Tea Research Institute of Chongqing Academy of Agricultural Science, Chongqing, China
| | - Ping Peng
- Tea Research Institute of Chongqing Academy of Agricultural Science, Chongqing, China
| | - Xiang Hu
- Tea Research Institute of Chongqing Academy of Agricultural Science, Chongqing, China
| | - Qiang Lin
- Tea Research Institute of Chongqing Academy of Agricultural Science, Chongqing, China
| | - Pu-Xiang Yang
- Jiangxi Sericulture and Tea Research Institute, Jiangxi, China
| | - Xiao-Qing Wang
- Tea Research Institute of Chongqing Academy of Agricultural Science, Chongqing, China
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Wang Z, Yao S, Zhu X, Hao J. The complete mitochondrial genome of Pidorus atratus (Lepidoptera: Zygaenoidea: Zygaenidae). Mitochondrial DNA B Resour 2018; 3:448-449. [PMID: 33474200 PMCID: PMC7799902 DOI: 10.1080/23802359.2018.1450670] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2018] [Accepted: 03/06/2018] [Indexed: 12/02/2022] Open
Abstract
The complete mitochondrial genome (mitogenome) of Pidorus atratus (Lepidoptera: Zygaenoidea: Zygaenidae) is described in this study. The circular molecule is 15,383 bp in length and contains 37 typical mitochondrial genes and one non-coding AT-rich region. All protein-coding genes (PCGs) start with ATN, except for cox1 gene with CGA; 10 of the 13 PCGs harbour the typical stop codon TAA, whereas cox1, cox2, and nad4 end with a single T. Two ribosomal RNA genes (rRNAs) are 1366 bp and 544 bp in length, respectively. The AT-rich region is 658 bp in size and harbours several features characteristic of the lepidopterans, including the motif ATAGA followed by a 20 bp poly-T stretch and a microsatellite-like (TA)9 element. The complete mitogenome data would be useful for further understanding the taxonomy and phylogeny of Zygaenoidea.
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Affiliation(s)
- Zihui Wang
- Laboratory of Molecular Evolution and Biodiversity, College of Life Sciences, Anhui Normal University, Wuhu, PR China
| | - Shun Yao
- Laboratory of Molecular Evolution and Biodiversity, College of Life Sciences, Anhui Normal University, Wuhu, PR China
| | - Xiaoyue Zhu
- Laboratory of Molecular Evolution and Biodiversity, College of Life Sciences, Anhui Normal University, Wuhu, PR China
| | - Jiasheng Hao
- Laboratory of Molecular Evolution and Biodiversity, College of Life Sciences, Anhui Normal University, Wuhu, PR China
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