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Giuditta A, Grassi Zucconi G, Sadile A. Brain metabolic DNA: recent evidence for a mitochondrial connection. Rev Neurosci 2020; 32:/j/revneuro.ahead-of-print/revneuro-2020-0050/revneuro-2020-0050.xml. [PMID: 32866135 DOI: 10.1515/revneuro-2020-0050] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2020] [Accepted: 07/18/2020] [Indexed: 02/24/2024]
Abstract
This review highlights recent data concerning the synthesis of brain metabolic DNA (BMD) by cytoplasmic reverse transcription and the prompt acquisition of the double-stranded configuration that allows its partial transfer to nuclei. BMD prevails in the mitochondrial fraction and is present in presynaptic regions and astroglial processes where it undergoes a turnover lasting a few weeks. Additional data demonstrate that BMD sequences are modified by learning, thus indicating that the modified synaptic activity allowing proper brain responses is encoded in learning BMD. In addition, several converging observations regarding the origin of BMD strongly suggest that BMD is reverse transcribed by mitochondrial telomerase.
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Affiliation(s)
- Antonio Giuditta
- Accademia di Scienze Fisiche e Matematiche, Via Mezzocannone 8, Naples, I-80134,Italy
| | | | - Adolfo Sadile
- Department of Experimental Medicine, L. Vanvitelli Medical School, University Campania, Via S. Andrea delle dame 7, Naples, I-80138,Italy
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Giuditta A, Grassi-Zucconi G, Sadile AG. Brain metabolic DNA in memory processing and genome turnover. Rev Neurosci 2017; 28:21-30. [DOI: 10.1515/revneuro-2016-0027] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2016] [Accepted: 07/15/2016] [Indexed: 11/15/2022]
Abstract
AbstractSophisticated methods are currently used to investigate the properties of brain DNA and clarify its role under physiological conditions and in neurological and psychiatric disorders. Attention is now called on a DNA fraction present in the adult rat brain that is characterized by an elevated turnover and is not involved in cell division or DNA repair. The fraction, known as brain metabolic DNA (BMD), is modulated by strain, stress, circadian oscillations, exposure to enriched or impoverished environment, and notably by several training protocols and post-trial sleep. BMD is frequently localized in glial cells but is also present in neurons, often in the perinucleolar region. Its distribution in repetitive and non-repetitive DNA fractions shows that BMD differs from native DNA and that in learning rats its profile differs from that of control rats. More detailed knowledge of the molecular, cellular, and time-dependent BMD features will be necessary to define its role in memory acquisition and processing and in the pathogenesis of neurologic disorders.
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Affiliation(s)
- Antonio Giuditta
- 1Department of Biology, Federico II University, Via Mezzocannone 8, I-80134 Napoli, Italy
| | - Gigliola Grassi-Zucconi
- 2Department of Neuroscience, Biomedicine and Movement Sciences, University of Verona, Strada Le Grazie 8, I-37129 Verona, Italy
| | - Adolfo G. Sadile
- 3Department of Experimental Medicine, Second University of Naples, Via S. Andrea delle dame 7, I-80138 Naples, Italy
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Gahan PB, Stroun M. The virtosome-a novel cytosolic informative entity and intercellular messenger. Cell Biochem Funct 2011; 28:529-38. [PMID: 20941743 DOI: 10.1002/cbf.1690] [Citation(s) in RCA: 101] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
Studies on a range of prokaryote and eukaryote cells and tissues have shown that a newly synthesized DNA/RNA-lipoprotein complex is released in a regulated manner. This complex, termed a virtosome, is a novel cytosolic component of eukaryote cells. The released virtosomes can readily enter other cells where they can modify the biology of the recipient cells. Such modifications include immunological changes and transformation from normal to cancer cells. The virtosomes form a normal component of the circulating nucleic acids in plasma and serum currently used for clinical diagnostic purposes. Given the transformative powers of virtosomes released from tumour cells, the presence of such a complex in human plasma could readily offer the basis of an alternative mechanism for the initiation of metastases.
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Viola-Magni MP. An analysis of DNA loss and synthesis in the rat adrenal medulla nuclei upon cold stimulation. ACTA ACUST UNITED AC 2010; 30:213-25. [PMID: 19866697 PMCID: PMC2107009 DOI: 10.1083/jcb.30.2.213] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
The peculiar changes previously observed in DNA content of rat adrenal medulla cell nuclei upon intermittent cold exposure (15 hr at +4°C followed by 9 hr at room temperature) have been further studied with the aid of Feulgen histophotometry and H3-thymidine radioautography. The amount of DNA decreases progressively with increasing length of cold exposure until 300 hr (-32%). Later a rapid change takes place, whereby DNA content per nucleus returns to values which are slightly, but consistently lower than normal. At termination of a period of cumulative exposure to cold, an analysis of a whole-day experimental cycle shows that the DNA decrease is due to loss of DNA during cold exposure and that DNA synthesis occurs upon return to room temperature. The balance between these two processes can be divided into three stages: (a) loss of DNA up to 300 hr of cumulative cold exposure; (b) marked increase in DNA by 350 hr; (c) oscillation around zero or slightly negative at 400 hr and beyond. These variations are due to: (1) the extension of DNA synthesis into the period of cold exposure as clearly demonstrated by radioautography (stage b), and (2) a later still greater DNA loss (stage c) which partly offsets the increased synthesis. A complex pattern of adaptation of the adrenal medulla cells, as regards DNA content, to the repetitive cold stimulus is thus demonstrated.
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Gahan PB, Anker P, Stroun M. Metabolic DNA as the origin of spontaneously released DNA? Ann N Y Acad Sci 2008; 1137:7-17. [PMID: 18837918 DOI: 10.1196/annals.1448.046] [Citation(s) in RCA: 63] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
Abstract
A DNA fraction is spontaneously released from living, but not dead or dying, human, other mammalian, avian, amphibian, plant, and prokaryote cells. The spontaneously released DNA fraction has been shown to be (a) present in both actively dividing and nondividing, differentiated cell populations; (b) labile; (c) associated with DNA-dependent RNA or DNA polymerase; (d) associated with an RNA fraction; and to have (e) a lower molecular weight than the typical genetic DNA fraction; and (f) Alu repeat sequences in increased proportions compared to a unique gene in plasma/serum. On the other hand, early autoradiographic and biochemical and quantitative cytochemical and cytophysical studies on DNA permitted the identification of a DNA fraction which was (1) present in both actively dividing and nondividing, differentiated cell populations; (2) labile; and (3) had a lower molecular weight than the typical genetic DNA fraction. This DNA fraction was termed metabolic DNA (m-DNA) and was proposed as possibly forming extra gene copies for the rapid production of m-RNA, to be destroyed subsequently. Therefore, we suggest that the metabolic DNA fraction might represent the precursor to the formation of the spontaneously released DNA fraction.
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Affiliation(s)
- Peter B Gahan
- Anatomy and Human Sciences, King's College, London, London, United Kingdom.
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Mares V, van der Ploeg M. Cytophotometric re-investigation of DNA content in Purkinje cells of the rat cerebellum. HISTOCHEMISTRY 1980; 69:161-7. [PMID: 7007296 DOI: 10.1007/bf00533133] [Citation(s) in RCA: 21] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Abstract
Stage scanning cytophotometry of Feulgen-stained cell nuclei of the cerebellum of young adult rats revealed that the absorbance values of the majority of the Purkinje cells show a Gaussian distribution with a low coefficient of variance. The peak absorbance of this population is the same as that of the granule cells. About 1% of the Purkinje cells measured, were found to have a stain content which indicates a 4C amount of DNA. For both the granular and the Purkinje cell population, a very small number of nuclei possesses absorbance values intermediate between 2C and 4C. The present data suggest prevalent diploidy of the Purkinje cells, and are at variance with those postulating a 'tetraploid and/or hyperdiploid' status of this population.
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Bibbiani C, Viola-Magni MP. Metabolic DNA in the hepatocyte nuclei in newborn rats. HISTOCHEMISTRY 1975; 43:63-72. [PMID: 1170148 DOI: 10.1007/bf00490155] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Abstract
The behaviour in time of labelled nuclear DNA in the hepatocytes of newborn rats was studied using autoradiographic and biochemical techniques in two groups of experiments. In the first group H-3-thymidine was injected to the mothers at the 16th day of pregnancy and the amount of labelled DNA was evaluated in the newborns after delivery. In the second group H-3-thymidine was injected to the newborns two hours after birth and the labelled DNA was studied at the same time intervals as the first group. The amount of labelled thymidine incorporated into the first group of animals remains constant for the first three days of life, thereafter a reduction in specific activity of DNA is observed concomitant with an increase of the percentage of labelled nuclei and a decrease of the number of grains per nucleus. These results show that mitotic divisions, which are absent during the first three days of life, take place between the third and sixth days of life. The decrease of the specific activity is therefore due to dilution and not to loss of labelled DNA. In the second group of experiments the DNA labelled with H-3-thymidine shows a decrease by about 30--40% per day during the first three days of life accompanied by a decrease in the number of grains per nucleus without changes in the percentage of labelled nuclei. These data show that DNA synthesized during the first day after birth is metabolically unstable, unlike that synthesized during foetal life.
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Sawicki W, Rowiński J, Abramczuk J. Image analysis of chromatin in cells of reimplantation mouse embryos. J Biophys Biochem Cytol 1974; 63:227-33. [PMID: 4607859 PMCID: PMC2109330 DOI: 10.1083/jcb.63.1.227] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023] Open
Abstract
Mouse two-celled embryos and blastulae were Feulgen stained and the DNA content of their nuclei was measured with an integrating microdensitometer. The cells considered on the basis of their nuclear DNA content to be in G(1), S, and G(2) phases of the cell cycle were selected and their total chromatin area and chromatin areas at different gray levels were measured by the image analyzing computer, Quantimet. The measurements were aimed at quantitation of several features of the chromatin morphology of cells in different functional states. The total area of chromatin was found to increase, and the mean density of chromatin to decrease, from the G(1) to the G(2) phase of the cell cycle in both two-celled embryos and blastulae. The area of chromatin decreased, and the mean density of chromatin increased, as embryos developed from two-celled to blastula stage. It was concluded that nuclear morphology in preimplantation mouse embryos depends on both the phase of the cell cycle and the stage of development. The method of image analysis described was found to be useful for quantitation of changes in chromatin morphology.
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Viola-Magni MP, Samoncini G. DNA turnover in adrenal medullary cells of Long Evans rats. Differentiation 1973; 1:431-6. [PMID: 4807694 DOI: 10.1111/j.1432-0436.1973.tb00142.x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
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Bibbiani C, Tongiani R, Viola-Magni MP. Changes of DNA content per nucleus in hepatocytes of rat during the first days of postnatal life. HISTOCHEMIE. HISTOCHEMISTRY. HISTOCHIMIE 1973; 35:189-98. [PMID: 4730637 DOI: 10.1007/bf00305931] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
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Schmahl W, Hoffmann R, Weiss E. [Cytophotometric studies on normal lymph node cells in sheep]. EXPERIENTIA 1972; 28:1074-6. [PMID: 4665304 DOI: 10.1007/bf01918682] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
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Malvaldi G, Viola-Magni MP. DNA turnover in adrenal medullary cells of different strains of rats and its enhancement after intermittent exposure to cold. CELL AND TISSUE KINETICS 1972; 5:103-13. [PMID: 5025380 DOI: 10.1111/j.1365-2184.1972.tb01007.x] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
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Pelc SR. Metabolic DNA in ciliated protozoa, salivary gland chromosomes, and mammalian cells. INTERNATIONAL REVIEW OF CYTOLOGY 1972; 32:327-55. [PMID: 4623842 DOI: 10.1016/s0074-7696(08)60344-7] [Citation(s) in RCA: 62] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
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Bibbiani C, Viola-Magni MP. Catecholamine synthesis and excretion in rats exposed intermittently to cold. J Physiol 1971; 217:533-45. [PMID: 5098080 PMCID: PMC1331561 DOI: 10.1113/jphysiol.1971.sp009584] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023] Open
Abstract
Previous findings have shown a turnover of nuclear DNA, a condition related to the functional activity of these cells, in the adrenal medullae of rats intermittently exposed to cold. Striking differences have been observed between various strains of rats, particularly Italico and Wistar rats. In order to evaluate the function of the adrenal medullary cells, the content of catecholamines in the organ and their urinary excretion have been evaluated, with the fluorimetric method, in rats of Italico and Wistar strains kept at room temperature and exposed intermittently to cold. The results show that (i) at room temperature the levels of excretion are lower in Italico than in Wistar rats in spite of the equal amine contents of the adrenal medullae, (ii) the first exposure to cold causes a large increase in the urinary excretion and a decrease of adrenaline and noradrenaline content of the adrenal glands in both strains, (iii) after 3 days the catecholamine content in the organ was higher than normal in Wistar rats, whereas in the Italico strain it continued to decrease, and (iv) a new steady state at higher levels is reached after 20 days of exposure, when not only the catecholamine content but also the urinary excretion is equal in both strains. These differences between the two strains of rats during intermittent cold exposure are discussed in relation to the behaviour of DNA.
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Bibbiani C, Tongiani R, Viola-Magni MP. I. Quantitative determination of the amount of DNA per nucleus by interference microscopy. J Cell Biol 1969; 42:444-51. [PMID: 5792332 PMCID: PMC2107661 DOI: 10.1083/jcb.42.2.444] [Citation(s) in RCA: 19] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023] Open
Abstract
A method for the determination of the DNA content of isolated nuclei of different ploidy has been developed. It is based on measurement of the nuclear dry mass, with an integrating microinterferometer, before and after DNase treatment. The values found are slightly low, because, as indicated by biochemical determinations, consistently 5% to 8% of DNA is not extracted by DNase under these conditions. The average DNA values thus obtained for diploid and tetraploid nuclei of adult rat liver are 7.7 and 15.6 pg (10(-12) g), respectively. Definite advantages of this procedure are: i) comparisons with biochemical determinations to give DNA values for each class of ploidy, ii) comparisons with histophotometry of the Feulgen dye-DNA complex to give absolute values instead of arbitrary units.
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Pelc SR, Viola-Magni MP. 3. Decrease of labeled DNA in cells of the adrenal medulla after intermittent exposure to cold. J Cell Biol 1969; 42:460-8. [PMID: 5792334 PMCID: PMC2107685 DOI: 10.1083/jcb.42.2.460] [Citation(s) in RCA: 24] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023] Open
Abstract
Italico rats were injected with thymidine-(3)H 6 hr after the end of 300 hr of intermittent cold treatment. This plan of experiment ensured replacement in the adrenal medulla of lost DNA which is specifically sensitive to cold treatment and has a labeling index sufficiently high for statistical evaluation. The labeling index in the adrenal medulla decreases to one-half of the initial value within 10 days in animals subjected to further intermittent cold treatment and within 32 days in animals kept at room temperature. The very low mitotic index and the absence of doubling of the labeling index show that the observed labeling cannot be ascribed to pre-mitotic DNA synthesis. The concept of metabolic DNA adequately explains the findings.
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Tongiani R, Viola-Magni MP. II. Differences in adrenal medulla nuclear DNA content among rats of different strains following intermittent exposure to cold. J Cell Biol 1969; 42:452-9. [PMID: 5792333 PMCID: PMC2107679 DOI: 10.1083/jcb.42.2.452] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023] Open
Abstract
The amount of DNA per nucleus in the adrenal medulla cells of four different strains of rats (Wistar, Sprague-Dawley, Long-Evans, and Italico) is determined both under control conditions and after 300 hr of intermittent exposure to cold. The adrenal medulla nuclei of the four strains of rats contain the same amount of DNA; however, the loss of DNA observed after the same experimental treatment differs markedly in the different strains. The loss is small in Wistar and Sprague-Dawley rats (8-13%), larger in Long-Evans rats (20%) and still larger in Italico rats (45%). The DNA loss in Wistar rats increases if the animals are fed the same diet as the Italico rats, and the DNA loss in Italico rats is reduced if the animals are fed the same diet as the Wistar rats. The different behavior of the four strains is discussed in terms of turnover of DNA.
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Edelman M, Hirsch CA, Hiatt HH, Fox M. Apparent changes in mouse liver DNA content due to interference by non-DNA diphenylamine-reacting cytoplasmic material. BIOCHIMICA ET BIOPHYSICA ACTA 1969; 179:172-8. [PMID: 5787641 DOI: 10.1016/0005-2787(69)90133-6] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
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Sod-Moriah UA, Schmidt GH. Deoxyribonucleic acid content and proliferative activity of rabbit mammary gland epithelial cells. Exp Cell Res 1968; 49:584-97. [PMID: 5646600 DOI: 10.1016/0014-4827(68)90206-1] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
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Cohn NS, van Duijn P. Constancy of DNA content in adrenal medulla nuclei of cold-treated rats. J Biophys Biochem Cytol 1967; 33:349-54. [PMID: 6039376 PMCID: PMC2108354 DOI: 10.1083/jcb.33.2.349] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023] Open
Abstract
Reports of changes in DNA content of certain types of cells following exposure to conditions of stress has led to the suggestion that two kinds of DNA may be present. One is genetic DNA, and the other is called "metabolic" DNA. In a further attempt to investigate the possibility of this phenomenon, determinations of DNA content were made on Feulgen-stained nuclei of adrenal glands and kidneys in cold-treated rats. Feulgen-stained nuclei were measured by two-wavelength microspectrophotometry. Particular attention was given to the handling of the smears in hydrolysis and staining. Mean values of Feulgen-DNA contents in a total of 720 nuclei demonstrated (a) a constancy of DNA content within 2% in individual nuclei both in adrenal medulla and kidney cortex, (b) no more than an average of 2% difference in DNA content between control and experimental nuclei, and (c) no more than an average of 1.5% difference in DNA content between normal kidney cortex nuclei and normal adrenal medulla nuclei. These results confirm the view that the more precise the measurement, the more accurately the constancy rule is obeyed. Moreover, there is no support for the concept of a metabolic DNA in the rat adrenal medulla.
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Arold R, Sandritter W. [Cytophotometric determination of DNA content in cell nuclei of the adrenal medulla, adrenal cortex and thyroid gland under various experimental conditions]. HISTOCHEMIE. HISTOCHEMISTRY. HISTOCHIMIE 1967; 10:88-97. [PMID: 5594554 DOI: 10.1007/bf00304377] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
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Viola-Magni MP. A radioautographic study with H3-thymidine on adrenal medulla nuclei of rats intermittently exposed to cold. J Biophys Biochem Cytol 1966; 28:9-19. [PMID: 5901503 PMCID: PMC2106896 DOI: 10.1083/jcb.28.1.9] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023] Open
Abstract
A considerable decrease (24 to 40%) of DNA content per nucleus previously observed in the adrenal medulla of rats exposed intermittently to cold is followed by restoration to normal and supranormal values. This phenomenon has now been studied by use of H(3)-thymidine, which was given to normal rats, to rats exposed to cold, and to animals brought to room temperature after cold exposure. In the first two conditions, no significant labeling of nuclei was observed. In the third, labeling took place clearly in the 1st 3 days. The grain counts showed that the early labeled nuclei had more grains than those labeled later, indicating differences in the rate of DNA synthesis. A statistically significant correlation was found, on the same nuclei, between amount of Feulgen dye and number of grains. It is concluded that net synthesis of DNA takes place in the phase of recovery from cold. This fact is not related to cell division, as no mitoses could ever be detected, but rather to the cold-induced loss of DNA. Clear demonstration is thus given of a marked variation in the amount of DNA per nucleus in relation to the functional conditions of adrenal medulla cells.
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Viola-Magni M. The incorporation of H3-thymidine in the nuclei of the cells of adrenal medulla of rats. EXPERIENTIA 1965; 21:716-7. [PMID: 5869712 DOI: 10.1007/bf02138492] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
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