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Habib MR, Bu L, Posavi M, Zhong D, Yan G, Zhang SM. Yolk proteins of the schistosomiasis vector snail Biomphalaria glabrata revealed by multi-omics analysis. Sci Rep 2024; 14:1820. [PMID: 38245605 PMCID: PMC10799875 DOI: 10.1038/s41598-024-52392-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2023] [Accepted: 01/18/2024] [Indexed: 01/22/2024] Open
Abstract
Vitellogenesis is the most important process in animal reproduction, in which yolk proteins play a vital role. Among multiple yolk protein precursors, vitellogenin (Vtg) is a well-known major yolk protein (MYP) in most oviparous animals. However, the nature of MYP in the freshwater gastropod snail Biomphalaria glabrata remains elusive. In the current study, we applied bioinformatics, tissue-specific transcriptomics, ovotestis-targeted proteomics, and phylogenetics to investigate the large lipid transfer protein (LLTP) superfamily and ferritin-like family in B. glabrata. Four members of LLTP superfamily (BgVtg1, BgVtg2, BgApo1, and BgApo2), one yolk ferritin (Bg yolk ferritin), and four soma ferritins (Bg ferritin 1, 2, 3, and 4) were identified in B. glabrata genome. The proteomic analysis demonstrated that, among the putative yolk proteins, BgVtg1 was the yolk protein appearing in the highest amount in the ovotestis, followed by Bg yolk ferritin. RNAseq profile showed that the leading synthesis sites of BgVtg1 and Bg yolk ferritin are in the ovotestis (presumably follicle cells) and digestive gland, respectively. Phylogenetic analysis indicated that BgVtg1 is well clustered with Vtgs of other vertebrates and invertebrates. We conclude that, vitellogenin (BgVtg1), not yolk ferritin (Bg yolk ferritin), is the major yolk protein precursor in the schistosomiasis vector snail B. glabrata.
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Affiliation(s)
- Mohamed R Habib
- Department of Biology, Center for Evolutionary and Theoretical Immunology, University of New Mexico, Albuquerque, NM, 87131, USA
| | - Lijing Bu
- Department of Biology, Center for Evolutionary and Theoretical Immunology, University of New Mexico, Albuquerque, NM, 87131, USA
| | - Marijan Posavi
- Department of Biology, Center for Evolutionary and Theoretical Immunology, University of New Mexico, Albuquerque, NM, 87131, USA
| | - Daibin Zhong
- Program in Public Health, College of Health Science, University of California, Irvine, CA, 92697, USA
| | - Guiyun Yan
- Program in Public Health, College of Health Science, University of California, Irvine, CA, 92697, USA
| | - Si-Ming Zhang
- Department of Biology, Center for Evolutionary and Theoretical Immunology, University of New Mexico, Albuquerque, NM, 87131, USA.
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Oulhen N, Morita S, Pieplow C, Onorato TM, Foster S, Wessel G. Conservation and contrast in cell states of echinoderm ovaries. Mol Reprod Dev 2023:10.1002/mrd.23721. [PMID: 38054259 PMCID: PMC11153327 DOI: 10.1002/mrd.23721] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2023] [Revised: 11/20/2023] [Accepted: 11/21/2023] [Indexed: 12/07/2023]
Abstract
Echinoderms produce functional gametes throughout their lifespan, in some cases exceeding 200 years. The histology and ultrastructure of echinoderm ovaries has been described but how these ovaries function and maintain the production of high-quality gametes remains a mystery. Here, we present the first single cell RNA sequencing data sets of mature ovaries from two sea urchin species (Strongylocentrotus purpuratus [Sp] and Lytechinus variegatus [Lv]), and one sea star species (Patiria miniata [Pm]). We find 14 cell states in the Sp ovary, 16 cell states in the Lv ovary and 13 cell states in the ovary of the sea star. This resource is essential to understand the structure and functional biology of the ovary in echinoderms, and better informs decisions in the utilization of in situ RNA hybridization probes selective for various cell types. We link key genes with cell clusters in validation of this approach. This resource also aids in the identification of the stem cells for prolonged and continuous gamete production, is a foundation for testing changes in the annual reproductive cycle, and is essential for understanding the evolution of reproduction of this important phylum.
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Affiliation(s)
- Nathalie Oulhen
- Department of Molecular and Cellular Biology & Biochemistry, Brown University, Providence, RI 02912, USA
| | - Shumpei Morita
- Department of Molecular and Cellular Biology & Biochemistry, Brown University, Providence, RI 02912, USA
- Asamushi Research Center for Marine Biology, Tohoku University, Aomori, 039-3501, Japan
| | - Cosmo Pieplow
- Department of Molecular and Cellular Biology & Biochemistry, Brown University, Providence, RI 02912, USA
| | - Thomas M. Onorato
- Department of Molecular and Cellular Biology & Biochemistry, Brown University, Providence, RI 02912, USA
- Department of Natural Sciences, LaGuardia Community College, Long Island City, NY 11101, USA
| | - Stephany Foster
- Department of Molecular and Cellular Biology & Biochemistry, Brown University, Providence, RI 02912, USA
| | - Gary Wessel
- Department of Molecular and Cellular Biology & Biochemistry, Brown University, Providence, RI 02912, USA
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Meyer A, Hinman V. The arm of the starfish: The far-reaching applications of Patiria miniata as a model system in evolutionary, developmental, and regenerative biology. Curr Top Dev Biol 2022; 147:523-543. [PMID: 35337461 DOI: 10.1016/bs.ctdb.2022.01.006] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
Abstract
Many species of echinoderms have long been considered model research organisms in biology. Historically, much of this research has focused on the embryology of sea urchins and the use of their extensive gene regulatory networks as a tool to understand how the genome controls cell state specification and patterning. The establishment of Patiria miniata, the bat sea star, as a research organism has allowed us to expand on the concepts explored with sea urchins, viewing these genetic networks through a comparative lens, gaining great insight into the evolutionary mechanisms that shape developmental diversity. Extensive molecular tools have been developed in P. miniata, designed to explore gene expression dynamics and build gene regulatory networks. Echinoderms also have a robust set of bioinformatic and computational resources, centered around echinobase.org, an extensive database containing multiomic, developmental, and experimental resources for researchers. In addition to comparative evolutionary development, P. miniata is a promising system in its own right for studying whole body regeneration, metamorphosis and body plan development, as well as marine disease.
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Affiliation(s)
- Anne Meyer
- Department of Biological Sciences, Carnegie Mellon University, Pittsburgh, PA, United States
| | - Veronica Hinman
- Department of Biological Sciences, Carnegie Mellon University, Pittsburgh, PA, United States.
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Eckelbarger KJ, Hodgson AN. Invertebrate oogenesis – a review and synthesis: comparative ovarian morphology, accessory cell function and the origins of yolk precursors. INVERTEBR REPROD DEV 2021. [DOI: 10.1080/07924259.2021.1927861] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
Affiliation(s)
- Kevin J. Eckelbarger
- Darling Marine Center, School of Marine Sciences, The University of Maine, Walpole, Maine, U.S.A
| | - Alan N. Hodgson
- Department of Zoology and Entomology, Rhodes University, Grahamstown, South Africa
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Kitano H, Nagano N, Sakaguchi K, Matsuyama M. Two vitellogenins in the loliginid squid Uroteuthis edulis: Identification and specific expression in ovarian follicles. Mol Reprod Dev 2017; 84:363-375. [PMID: 28218427 DOI: 10.1002/mrd.22786] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2016] [Accepted: 02/16/2017] [Indexed: 11/08/2022]
Abstract
Vitellogenenesis is a physiological process common in oviparous animals. The molecular profile, modifications, and utilization of vitellogenin (VTG), a precursor of yolk protein, have been characterized in various taxa to understand oogenesis within different modes of reproduction. Hormonal regulation of VTGs has been investigated in invertebrates, such as insects and crustaceans; conversely, little is known for cephalopods. In this study, we isolated two VTG genes (ue-VTG1 and ue-VTG2) from the loliginid swordtip squid, Uroteuthis edulis, via a comprehensive survey of a transcriptome database and subsequent cDNA cloning. Structural analysis of the two ue-VTGs revealed their unique features, namely the absence of two domains usually found in VTGs from other organisms: the von Willebrand factor D domain (vWD) and the domain of unknown function 1943 (DUF1943). Levels of ue-VTG1 and ue-VTG2 transcripts in the ovary, specifically in follicular cells, increased during the late-vitellogenic phase, suggesting that yolk accumulation progresses via paracrine interactions involving follicular cells and oocytes. N-terminal amino acid sequencing of biochemically purified yolk protein revealed its origins from these two VTGs, indicating that both are functional precursors of yolk protein. These results provide information that is essential to understanding the physiological pathway of yolk synthesis, accumulation, and storage in loliginid squids.
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Affiliation(s)
- Hajime Kitano
- Department of Joint Research, Faculty of Agriculture, Fisheries Research Institute of Karatsu, Kyushu University, Karatsu, Saga, Japan
| | - Naoki Nagano
- Department of Joint Research, Faculty of Agriculture, Fisheries Research Institute of Karatsu, Kyushu University, Karatsu, Saga, Japan
| | - Keishi Sakaguchi
- Department of Joint Research, Faculty of Agriculture, Fisheries Research Institute of Karatsu, Kyushu University, Karatsu, Saga, Japan
| | - Michiya Matsuyama
- Department of Bioresource Sciences, Faculty of Agriculture, Kyushu University, Fukuoka, Japan
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