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De Wilde D, Zanier O, Da Mutten R, Jin M, Regli L, Serra C, Staartjes VE. Strategies for generating synthetic computed tomography-like imaging from radiographs: A scoping review. Med Image Anal 2025; 101:103454. [PMID: 39793215 DOI: 10.1016/j.media.2025.103454] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2024] [Revised: 11/18/2024] [Accepted: 01/03/2025] [Indexed: 01/13/2025]
Abstract
BACKGROUND Advancements in tomographic medical imaging have revolutionized diagnostics and treatment monitoring by offering detailed 3D visualization of internal structures. Despite the significant value of computed tomography (CT), challenges such as high radiation dosage and cost barriers limit its accessibility, especially in low- and middle-income countries. Recognizing the potential of radiographic imaging in reconstructing CT images, this scoping review aims to explore the emerging field of synthesizing 3D CT-like images from 2D radiographs by examining the current methodologies. METHODS A scoping review was carried out following PRISMA-SR guidelines. Eligibility criteria for the articles included full-text articles published up to September 9, 2024, studying methodologies for the synthesis of 3D CT images from 2D biplanar or four-projection x-ray images. Eligible articles were sourced from PubMed MEDLINE, Embase, and arXiv. RESULTS 76 studies were included. The majority (50.8 %, n = 30) were published between 2010 and 2020 (38.2 %, n = 29) and from 2020 onwards (36.8 %, n = 28), with European (40.8 %, n = 31), North American (26.3 %, n = 20), and Asian (32.9 %, n = 25) institutions being primary contributors. Anatomical regions varied, with 17.1 % (n = 13) of studies not using clinical data. Further, studies focused on the chest (25 %, n = 19), spine and vertebrae (17.1 %, n = 13), coronary arteries (10.5 %, n = 8), and cranial structures (10.5 %, n = 8), among other anatomical regions. Convolutional neural networks (CNN) (19.7 %, n = 15), generative adversarial networks (21.1 %, n = 16) and statistical shape models (15.8 %, n = 12) emerged as the most applied methodologies. A limited number of studies included explored the use of conditional diffusion models, iterative reconstruction algorithms, statistical shape models, and digital tomosynthesis. CONCLUSION This scoping review summarizes current strategies and challenges in synthetic imaging generation. The development of 3D CT-like imaging from 2D radiographs could reduce radiation risk while simultaneously addressing financial and logistical obstacles that impede global access to CT imaging. Despite initial promising results, the field encounters challenges with varied methodologies and frequent lack of proper validation, requiring further research to define synthetic imaging's clinical role.
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Affiliation(s)
- Daniel De Wilde
- Machine Intelligence in Clinical Neuroscience & Microsurgical Neuroanatomy (MICN) Laboratory, Department of Neurosurgery, Clinical Neuroscience Center, University Hospital Zurich, University of Zurich, Zurich, Switzerland
| | - Olivier Zanier
- Machine Intelligence in Clinical Neuroscience & Microsurgical Neuroanatomy (MICN) Laboratory, Department of Neurosurgery, Clinical Neuroscience Center, University Hospital Zurich, University of Zurich, Zurich, Switzerland
| | - Raffaele Da Mutten
- Machine Intelligence in Clinical Neuroscience & Microsurgical Neuroanatomy (MICN) Laboratory, Department of Neurosurgery, Clinical Neuroscience Center, University Hospital Zurich, University of Zurich, Zurich, Switzerland
| | - Michael Jin
- Department of Neurosurgery, Stanford University, Stanford, California, USA
| | - Luca Regli
- Machine Intelligence in Clinical Neuroscience & Microsurgical Neuroanatomy (MICN) Laboratory, Department of Neurosurgery, Clinical Neuroscience Center, University Hospital Zurich, University of Zurich, Zurich, Switzerland
| | - Carlo Serra
- Machine Intelligence in Clinical Neuroscience & Microsurgical Neuroanatomy (MICN) Laboratory, Department of Neurosurgery, Clinical Neuroscience Center, University Hospital Zurich, University of Zurich, Zurich, Switzerland
| | - Victor E Staartjes
- Machine Intelligence in Clinical Neuroscience & Microsurgical Neuroanatomy (MICN) Laboratory, Department of Neurosurgery, Clinical Neuroscience Center, University Hospital Zurich, University of Zurich, Zurich, Switzerland.
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Frisken S, Haouchine N, Du R, Golby AJ. Using temporal and structural data to reconstruct 3D cerebral vasculature from a pair of 2D digital subtraction angiography sequences. Comput Med Imaging Graph 2022; 99:102076. [PMID: 35636377 PMCID: PMC10801782 DOI: 10.1016/j.compmedimag.2022.102076] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2021] [Revised: 02/28/2022] [Accepted: 05/05/2022] [Indexed: 11/24/2022]
Abstract
PURPOSE The purpose of this work is to present a new method for reconstructing patient-specific three-dimensional (3D) vasculature of the brain from a pair of digital subtraction angiography (DSA) image sequences from different viewpoints, e.g., from bi-plane angiography. Our long-term goal is to provide high resolution visualization of 3D vasculature with dynamic flow of contrast agent from limited data that is readily available during surgical procedures. The proposed method is the second of a three-stage process composed of 1) augmenting vessel segmentation with vessel radii and timing of the arrival of a bolus of contrast agent, 2) reconstructing a volumetric representation of the augmented vessel data from the augmented 2D segmentations, and 3) generating a 3D model of vessels and flow of contrast agent from the volumetric reconstruction. Unlike previous methods, which are either limited to relatively simple vessel structures or rely on multiple views and/or prior models of the vasculature, our method requires only a single pair of 2D DSA sequences taken from different view directions. METHODS We developed a new mathematical algorithm that augments vessel centerlines with vessel radii and bolus arrival times derived directly from the 2D DSA sequences to constrain the 3D reconstruction. We validated this method on digital phantoms derived from clinical data and from fractal models of branching tree structures. RESULTS In standard reconstruction methods, reconstruction by projection of two views into 3D space results in 'ghosting' artifacts, i.e., false 3D structure that occurs where vessels or vessel segments overlap in the 2D images. For the complex vascular of the brain, this ghosting is severe and is a major hurdle for methods that attempt to generate 3D structure from 2D images. We show that our approach reduces ghosting by up to 99% in digital phantoms derived from clinical data. CONCLUSION Our dramatic reduction in ghosting artifacts in 3D reconstructions from a pair of 2D image sequences is an important step towards generating high resolution 3D vasculature with dynamic flow information from a single DSA sequence acquired using bi-plane angiography.
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Affiliation(s)
- Sarah Frisken
- Department of Radiology, Brigham and Women's Hospital, United States; Harvard Medical School, United States.
| | - Nazim Haouchine
- Department of Radiology, Brigham and Women's Hospital, United States; Harvard Medical School, United States
| | - Rose Du
- Department of Radiology, Brigham and Women's Hospital, United States; Department of Neurosurgery, Brigham and Women's Hospital, United States; Harvard Medical School, United States
| | - Alexandra J Golby
- Department of Radiology, Brigham and Women's Hospital, United States; Department of Neurosurgery, Brigham and Women's Hospital, United States; Harvard Medical School, United States
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Kyme AZ, Fulton RR. Motion estimation and correction in SPECT, PET and CT. Phys Med Biol 2021; 66. [PMID: 34102630 DOI: 10.1088/1361-6560/ac093b] [Citation(s) in RCA: 37] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2020] [Accepted: 06/08/2021] [Indexed: 11/11/2022]
Abstract
Patient motion impacts single photon emission computed tomography (SPECT), positron emission tomography (PET) and X-ray computed tomography (CT) by giving rise to projection data inconsistencies that can manifest as reconstruction artifacts, thereby degrading image quality and compromising accurate image interpretation and quantification. Methods to estimate and correct for patient motion in SPECT, PET and CT have attracted considerable research effort over several decades. The aims of this effort have been two-fold: to estimate relevant motion fields characterizing the various forms of voluntary and involuntary motion; and to apply these motion fields within a modified reconstruction framework to obtain motion-corrected images. The aims of this review are to outline the motion problem in medical imaging and to critically review published methods for estimating and correcting for the relevant motion fields in clinical and preclinical SPECT, PET and CT. Despite many similarities in how motion is handled between these modalities, utility and applications vary based on differences in temporal and spatial resolution. Technical feasibility has been demonstrated in each modality for both rigid and non-rigid motion, but clinical feasibility remains an important target. There is considerable scope for further developments in motion estimation and correction, and particularly in data-driven methods that will aid clinical utility. State-of-the-art machine learning methods may have a unique role to play in this context.
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Affiliation(s)
- Andre Z Kyme
- School of Biomedical Engineering, The University of Sydney, Sydney, New South Wales, AUSTRALIA
| | - Roger R Fulton
- Sydney School of Health Sciences, The University of Sydney, Sydney, New South Wales, AUSTRALIA
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Li S, Nunes J, Toumoulin C, Luo L. 3D Coronary Artery Reconstruction by 2D Motion Compensation Based on Mutual Information. Ing Rech Biomed 2018. [DOI: 10.1016/j.irbm.2017.11.005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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Unberath M, Aichert A, Achenbach S, Maier A. Consistency-based respiratory motion estimation in rotational angiography. Med Phys 2017; 44:e113-e124. [DOI: 10.1002/mp.12021] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2016] [Revised: 11/03/2016] [Accepted: 11/18/2016] [Indexed: 11/06/2022] Open
Affiliation(s)
- Mathias Unberath
- Pattern Recognition Lab, Computer Science Department; Friedrich-Alexander-University Erlangen-Nuremberg; Erlangen Germany
- Graduate School in Advanced Optical Technologies (SAOT); Erlangen Germany
| | - André Aichert
- Pattern Recognition Lab, Computer Science Department; Friedrich-Alexander-University Erlangen-Nuremberg; Erlangen Germany
| | - Stephan Achenbach
- Department of Cardiology; Friedrich-Alexander-University Erlangen-Nuremberg; Erlangen Germany
| | - Andreas Maier
- Pattern Recognition Lab, Computer Science Department; Friedrich-Alexander-University Erlangen-Nuremberg; Erlangen Germany
- Graduate School in Advanced Optical Technologies (SAOT); Erlangen Germany
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Ruhlandt A, Töpperwien M, Krenkel M, Mokso R, Salditt T. Four dimensional material movies: High speed phase-contrast tomography by backprojection along dynamically curved paths. Sci Rep 2017; 7:6487. [PMID: 28747663 PMCID: PMC5529574 DOI: 10.1038/s41598-017-06333-6] [Citation(s) in RCA: 40] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2017] [Accepted: 06/12/2017] [Indexed: 11/09/2022] Open
Abstract
We present an approach towards four dimensional (4d) movies of materials, showing dynamic processes within the entire 3d structure. The method is based on tomographic reconstruction on dynamically curved paths using a motion model estimated by optical flow techniques, considerably reducing the typical motion artefacts of dynamic tomography. At the same time we exploit x-ray phase contrast based on free propagation to enhance the signal from micron scale structure recorded with illumination times down to a millisecond (ms). The concept is demonstrated by observing the burning process of a match stick in 4d, using high speed synchrotron phase contrast x-ray tomography recordings. The resulting movies reveal the structural changes of the wood cells during the combustion.
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Affiliation(s)
- A Ruhlandt
- Institut für Röntgenphysik, Universität Göttingen, Friedrich-Hund-Platz 1, Göttingen, Germany
| | - M Töpperwien
- Institut für Röntgenphysik, Universität Göttingen, Friedrich-Hund-Platz 1, Göttingen, Germany
| | - M Krenkel
- Institut für Röntgenphysik, Universität Göttingen, Friedrich-Hund-Platz 1, Göttingen, Germany
| | - R Mokso
- Swiss Light Source, Paul Scherrer Institute, 5232, Villigen, Switzerland
| | - T Salditt
- Institut für Röntgenphysik, Universität Göttingen, Friedrich-Hund-Platz 1, Göttingen, Germany.
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Kim S, Chang Y, Ra JB. Cardiac motion correction based on partial angle reconstructed images in x-ray CT. Med Phys 2016; 42:2560-71. [PMID: 25979048 DOI: 10.1118/1.4918580] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
Abstract
PURPOSE Cardiac x-ray CT imaging is still challenging due to heart motion, which cannot be ignored even with the current rotation speed of the equipment. In response, many algorithms have been developed to compensate remaining motion artifacts by estimating the motion using projection data or reconstructed images. In these algorithms, accurate motion estimation is critical to the compensated image quality. In addition, since the scan range is directly related to the radiation dose, it is preferable to minimize the scan range in motion estimation. In this paper, the authors propose a novel motion estimation and compensation algorithm using a sinogram with a rotation angle of less than 360°. The algorithm estimates the motion of the whole heart area using two opposite 3D partial angle reconstructed (PAR) images and compensates the motion in the reconstruction process. METHODS A CT system scans the thoracic area including the heart over an angular range of 180° + α + β, where α and β denote the detector fan angle and an additional partial angle, respectively. The obtained cone-beam projection data are converted into cone-parallel geometry via row-wise fan-to-parallel rebinning. Two conjugate 3D PAR images, whose center projection angles are separated by 180°, are then reconstructed with an angular range of β, which is considerably smaller than a short scan range of 180° + α. Although these images include limited view angle artifacts that disturb accurate motion estimation, they have considerably better temporal resolution than a short scan image. Hence, after preprocessing these artifacts, the authors estimate a motion model during a half rotation for a whole field of view via nonrigid registration between the images. Finally, motion-compensated image reconstruction is performed at a target phase by incorporating the estimated motion model. The target phase is selected as that corresponding to a view angle that is orthogonal to the center view angles of two conjugate PAR images. To evaluate the proposed algorithm, digital XCAT and physical dynamic cardiac phantom datasets are used. The XCAT phantom datasets were generated with heart rates of 70 and 100 bpm, respectively, by assuming a system rotation time of 300 ms. A physical dynamic cardiac phantom was scanned using a slowly rotating XCT system so that the effective heart rate will be 70 bpm for a system rotation speed of 300 ms. RESULTS In the XCAT phantom experiment, motion-compensated 3D images obtained from the proposed algorithm show coronary arteries with fewer motion artifacts for all phases. Moreover, object boundaries contaminated by motion are well restored. Even though object positions and boundary shapes are still somewhat different from the ground truth in some cases, the authors see that visibilities of coronary arteries are improved noticeably and motion artifacts are reduced considerably. The physical phantom study also shows that the visual quality of motion-compensated images is greatly improved. CONCLUSIONS The authors propose a novel PAR image-based cardiac motion estimation and compensation algorithm. The algorithm requires an angular scan range of less than 360°. The excellent performance of the proposed algorithm is illustrated by using digital XCAT and physical dynamic cardiac phantom datasets.
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Affiliation(s)
- Seungeon Kim
- Department of Electrical Engineering, KAIST, Daejeon 305-701, Republic of Korea
| | - Yongjin Chang
- Department of Electrical Engineering, KAIST, Daejeon 305-701, Republic of Korea
| | - Jong Beom Ra
- Department of Electrical Engineering, KAIST, Daejeon 305-701, Republic of Korea
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Reconstruction of coronary arteries from X-ray angiography: A review. Med Image Anal 2016; 32:46-68. [PMID: 27054277 DOI: 10.1016/j.media.2016.02.007] [Citation(s) in RCA: 54] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2015] [Revised: 01/29/2016] [Accepted: 02/22/2016] [Indexed: 01/18/2023]
Abstract
Despite continuous progress in X-ray angiography systems, X-ray coronary angiography is fundamentally limited by its 2D representation of moving coronary arterial trees, which can negatively impact assessment of coronary artery disease and guidance of percutaneous coronary intervention. To provide clinicians with 3D/3D+time information of coronary arteries, methods computing reconstructions of coronary arteries from X-ray angiography are required. Because of several aspects (e.g. cardiac and respiratory motion, type of X-ray system), reconstruction from X-ray coronary angiography has led to vast amount of research and it still remains as a challenging and dynamic research area. In this paper, we review the state-of-the-art approaches on reconstruction of high-contrast coronary arteries from X-ray angiography. We mainly focus on the theoretical features in model-based (modelling) and tomographic reconstruction of coronary arteries, and discuss the evaluation strategies. We also discuss the potential role of reconstructions in clinical decision making and interventional guidance, and highlight areas for future research.
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Liu B, Zhou F, Bai X. Improved C-arm cardiac cone beam CT based on alternate reconstruction and segmentation. Biomed Signal Process Control 2014. [DOI: 10.1016/j.bspc.2014.04.002] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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10
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Choi JH, Fahrig R, Keil A, Besier TF, Pal S, McWalter EJ, Beaupré GS, Maier A. Fiducial marker-based correction for involuntary motion in weight-bearing C-arm CT scanning of knees. Part I. Numerical model-based optimization. Med Phys 2014; 40:091905. [PMID: 24007156 DOI: 10.1118/1.4817476] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
Abstract
PURPOSE Human subjects in standing positions are apt to show much more involuntary motion than in supine positions. The authors aimed to simulate a complicated realistic lower body movement using the four-dimensional (4D) digital extended cardiac-torso (XCAT) phantom. The authors also investigated fiducial marker-based motion compensation methods in two-dimensional (2D) and three-dimensional (3D) space. The level of involuntary movement-induced artifacts and image quality improvement were investigated after applying each method. METHODS An optical tracking system with eight cameras and seven retroreflective markers enabled us to track involuntary motion of the lower body of nine healthy subjects holding a squat position at 60° of flexion. The XCAT-based knee model was developed using the 4D XCAT phantom and the optical tracking data acquired at 120 Hz. The authors divided the lower body in the XCAT into six parts and applied unique affine transforms to each so that the motion (6 degrees of freedom) could be synchronized with the optical markers' location at each time frame. The control points of the XCAT were tessellated into triangles and 248 projection images were created based on intersections of each ray and monochromatic absorption. The tracking data sets with the largest motion (Subject 2) and the smallest motion (Subject 5) among the nine data sets were used to animate the XCAT knee model. The authors defined eight skin control points well distributed around the knees as pseudo-fiducial markers which functioned as a reference in motion correction. Motion compensation was done in the following ways: (1) simple projection shifting in 2D, (2) deformable projection warping in 2D, and (3) rigid body warping in 3D. Graphics hardware accelerated filtered backprojection was implemented and combined with the three correction methods in order to speed up the simulation process. Correction fidelity was evaluated as a function of number of markers used (4-12) and marker distribution in three scenarios. RESULTS Average optical-based translational motion for the nine subjects was 2.14 mm (± 0.69 mm) and 2.29 mm (± 0.63 mm) for the right and left knee, respectively. In the representative central slices of Subject 2, the authors observed 20.30%, 18.30%, and 22.02% improvements in the structural similarity (SSIM) index with 2D shifting, 2D warping, and 3D warping, respectively. The performance of 2D warping improved as the number of markers increased up to 12 while 2D shifting and 3D warping were insensitive to the number of markers used. The minimum required number of markers for 2D shifting, 2D warping, and 3D warping was 4-6, 12, and 8, respectively. An even distribution of markers over the entire field of view provided robust performance for all three correction methods. CONCLUSIONS The authors were able to simulate subject-specific realistic knee movement in weight-bearing positions. This study indicates that involuntary motion can seriously degrade the image quality. The proposed three methods were evaluated with the numerical knee model; 3D warping was shown to outperform the 2D methods. The methods are shown to significantly reduce motion artifacts if an appropriate marker setup is chosen.
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Affiliation(s)
- Jang-Hwan Choi
- Department of Radiology, Stanford University, Stanford, California 94305, USA.
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Breuilly M, Malandain G, Guglielmi J, Marsault R, Pourcher T, Franken PR, Darcourt J. Amplitude-based data selection for optimal retrospective reconstruction in micro-SPECT. Phys Med Biol 2013; 58:2657-74. [DOI: 10.1088/0031-9155/58/8/2657] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
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Tang Q, Cammin J, Srivastava S, Taguchi K. A fully four-dimensional, iterative motion estimation and compensation method for cardiac CT. Med Phys 2012; 39:4291-305. [PMID: 22830763 PMCID: PMC3396707 DOI: 10.1118/1.4725754] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2011] [Revised: 05/19/2012] [Accepted: 05/21/2012] [Indexed: 01/18/2023] Open
Abstract
PURPOSE To develop a new fully four-dimensional (4D), iterative image reconstruction algorithm for cardiac CT that alternates the following two methods: estimation of a time-dependent motion vector field (MVF) of the heart from image data and reconstruction of images using the estimated MVF and projection data. METHODS Volumetric image data at different cardiac phase points were obtained using electrocardiogram-gated CT. Motion estimation (ME) and motion-compensated image reconstruction (MCR) were performed alternately until convergence was achieved. The ME method estimated the cardiac MVF using 4D nonrigid image registration between a cardiac reference phase and all the other phases. The nonrigid deformation of the heart was modeled using cubic B-splines. The cost function consisted of a sum of squared weighted differences and spatial and temporal regularization terms. A nested conjugate gradient optimization algorithm was applied to minimize the cost function and estimate the MVFs. Cardiac images were reconstructed using a motion-tracking algorithm that utilized the MVFs estimated by the ME method. The reconstructed images supplied the input to the ME of the next iteration. The performance of the proposed method was evaluated using four patient data sets acquired with a 64-slice CT scanner. The heart rates of the patients ranged from 52 to 71 beats/min. RESULTS Motion artifacts were significantly reduced, and the image quality increased with the number of iterations. Without MCR, the right coronary artery (RCA) was deformed into an arc in axial images of rapid phases. With the proposed method the RCA appeared sharper and was reconstructed similar in shape to the reconstruction at the quiescent phase at mid-diastole. The boundary between the interventricular septum and the right ventricle was also clearer and sharper using the proposed algorithm. The steepness of the transition range at a rapid phase (35% R-R) was increased from 6.8 HU∕pixel to 11.5 HU∕pixel. The ME-MCR algorithm converged in just four iterations. CONCLUSION We developed a fully 4D image reconstruction method that alternates ME and MCR algorithms in an iterative fashion. Performance tests using clinical patient data resulted in reduced motion artifacts.
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Affiliation(s)
- Qiulin Tang
- The Johns Hopkins University School of Medicine, Baltimore, MD 21287, USA.
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Isola A, Metz C, Schaap M, Klein S, Grass M, Niessen W. Cardiac motion-corrected iterative cone-beam CT reconstruction using a semi-automatic minimum cost path-based coronary centerline extraction. Comput Med Imaging Graph 2012; 36:215-26. [DOI: 10.1016/j.compmedimag.2011.12.005] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2010] [Revised: 10/14/2011] [Accepted: 12/19/2011] [Indexed: 11/30/2022]
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Onuma Y, Girasis C, Aben JP, Sarno G, Piazza N, Lokkerbol C, Morel MA, Serruys P. A novel dedicated 3-dimensional quantitative coronary analysis methodology for bifurcation lesions. EUROINTERVENTION 2011; 7:629-35. [DOI: 10.4244/eijv7i5a100] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Kakadiaris IA, Santamaría-Pang A, Pednekar A. Functional Morphology Analysis of the Left Anterior Descending Coronary Artery in EBCT Images. IEEE Trans Biomed Eng 2010; 57:1886-96. [DOI: 10.1109/tbme.2010.2043254] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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Isola A, Ziegler A, Schäfer D, Köhler T, Niessen W, Grass M. Motion compensated iterative reconstruction of a region of interest in cardiac cone-beam CT. Comput Med Imaging Graph 2010; 34:149-59. [DOI: 10.1016/j.compmedimag.2009.08.004] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2008] [Revised: 05/27/2009] [Accepted: 08/17/2009] [Indexed: 10/20/2022]
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Isola AA, Grass M, Niessen WJ. Fully automatic nonrigid registration-based local motion estimation for motion-corrected iterative cardiac CT reconstruction. Med Phys 2010; 37:1093-109. [PMID: 20384245 DOI: 10.1118/1.3301600] [Citation(s) in RCA: 43] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
Affiliation(s)
- Alfonso A Isola
- Philips Technologie GmbH Forschungslaboratorien, Roentgenstrasse 24-26, 22335 Hamburg, Germany.
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Liao R, Luc D, Sun Y, Kirchberg K. 3-D reconstruction of the coronary artery tree from multiple views of a rotational X-ray angiography. Int J Cardiovasc Imaging 2009; 26:733-49. [PMID: 19885737 DOI: 10.1007/s10554-009-9528-0] [Citation(s) in RCA: 46] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 02/06/2009] [Accepted: 10/18/2009] [Indexed: 01/28/2023]
Abstract
To present an efficient and robust method for 3-D reconstruction of the coronary artery tree from multiple ECG-gated views of an X-ray angiography. 2-D coronary artery centerlines are extracted automatically from X-ray projection images using an enhanced multi-scale analysis. For the difficult data with low vessel contrast, a semi-automatic tool based on fast marching method is implemented to allow manual correction of automatically-extracted 2-D centerlines. First, we formulate the 3-D symbolic reconstruction of coronary arteries from multiple views as an energy minimization problem incorporating a soft epipolar line constraint and a smoothness term evaluated in 3-D. The proposed formulation results in the robustness of the reconstruction to the imperfectness in 2-D centerline extraction, as well as the reconstructed coronary artery tree being inherently smooth in 3-D. We further propose to solve the energy minimization problem using α-expansion moves of Graph Cuts, a powerful optimization technique that yields a local minimum in a strong sense at a relatively low computational complexity. We show experimental results on a synthetic coronary phantom, a porcine data set and 11 patient data sets. For the coronary phantom, results obtained using different number of views are presented. 3-D reconstruction error evaluated by the mean plus one standard deviation is below one millimeter when 4 or more views are used. For real data, reconstruction using 4 to 5 views and 256 depth labels averaged around 12 s on a computer with 2.13 GHz Intel Pentium M and achieves a mean 2-D back-projection error of 1.18 mm (ranging from 0.84 to 1.71 mm) in 12 cases. The accuracy for multi-view reconstruction of the coronary artery tree as reported from the phantom and patient studies is promising, and the efficiency is significantly improved compared to other approaches reported in the literature, which range from a few to tens of minutes. Visually good and smooth reconstruction is demonstrated.
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Affiliation(s)
- Rui Liao
- Imaging & Visualization Department, Siemens Corporate Research, Princeton, NJ 08540, USA.
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Schoonenberg G, Neubauer A, Grass M. Three-dimensional coronary visualization, Part 2: 3D reconstruction. Cardiol Clin 2009; 27:453-65. [PMID: 19573717 DOI: 10.1016/j.ccl.2009.03.006] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
Abstract
Fully automatic generation of a volumetric representation of the coronary artery tree can be achieved by rotational coronary angiography acquisition and three-dimensional tomographic reconstruction. The generated volume datasets can assist the physician during percutaneous coronary interventions by visualizing three-dimensional coronary morphology and offering utility tools to derive various quantitative measurements. These utility tools allow lesion assessment, optimal working-view selection for specific vessel segments, and improved guidance via overlay functionality or follow C-arc. This article gives an overview of reconstruction methods, clinical tools, and present clinical data.
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Affiliation(s)
- Gert Schoonenberg
- Department of Cardiovascular Innovation, Business Unit Cardio/Vascular X-Ray, Philips Healthcare, Veenpluis 4-6, 5680 DA Best, The Netherlands.
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20
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Rit S, Sarrut D, Desbat L. Comparison of analytic and algebraic methods for motion-compensated cone-beam CT reconstruction of the thorax. IEEE TRANSACTIONS ON MEDICAL IMAGING 2009; 28:1513-1525. [PMID: 19211348 DOI: 10.1109/tmi.2008.2008962] [Citation(s) in RCA: 39] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
Respiratory motion is a major concern in cone-beam (CB) computed tomography (CT) of the thorax. It causes artifacts such as blur, streaks, and bands, in particular when using slow-rotating scanners mounted on the gantry of linear accelerators. In this paper, we compare two approaches for motion-compensated CBCT reconstruction of the thorax. The first one is analytic; it is heuristically adapted from the method of Feldkamp, Davis, and Kress (FDK). The second one is algebraic: the system of linear equations is generated using a new algorithm for the projection of deformable volumes and solved using the Simultaneous Algebraic Reconstruction Technique (SART). For both methods, we propose to estimate the motion on patient data using a previously acquired 4-D CT image. The methods were tested on two digital and one mechanical motion-controlled phantoms and on a patient dataset. Our results indicate that the two methods correct most motion artifacts. However, the analytic method does not fully correct streaks and bands even if the motion is perfectly estimated due to the underlying approximation. In contrast, the algebraic method allows us full correction of respiratory-induced artifacts.
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Affiliation(s)
- Simon Rit
- Department of Radiation Oncology, The Netherlands Cancer Institute-Antoni van Leeuwenhoek Hospital, 1066 CX Amsterdam, The Netherlands
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21
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Schirra CO, Bontus C, van Stevendaal U, Dössel O, Grass M. Improvement of cardiac CT reconstruction using local motion vector fields. Comput Med Imaging Graph 2008; 33:122-30. [PMID: 19097853 DOI: 10.1016/j.compmedimag.2008.10.012] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2008] [Accepted: 10/30/2008] [Indexed: 10/21/2022]
Abstract
The motion of the heart is a major challenge for cardiac imaging using CT. A novel approach to decrease motion blur and to improve the signal to noise ratio is motion compensated reconstruction which takes motion vector fields into account in order to correct motion. The presented work deals with the determination of local motion vector fields from high contrast objects and their utilization within motion compensated filtered back projection reconstruction. Image registration is applied during the quiescent cardiac phases. Temporal interpolation in parameter space is used in order to estimate motion during strong motion phases. The resulting motion vector fields are during image reconstruction. The method is assessed using a software phantom and several clinical cases for calcium scoring. As a criterion for reconstruction quality, calcium volume scores were derived from both, gated cardiac reconstruction and motion compensated reconstruction throughout the cardiac phases using low pitch helical cone beam CT acquisitions. The presented technique is a robust method to determine and utilize local motion vector fields. Motion compensated reconstruction using the derived motion vector fields leads to superior image quality compared to gated reconstruction. As a result, the gating window can be enlarged significantly, resulting in increased SNR, while reliable Hounsfield units are achieved due to the reduced level of motion artefacts. The enlargement of the gating window can be translated into reduced dose requirements.
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Affiliation(s)
- Carsten Oliver Schirra
- Insitute for Biomedical Engineering, University of Karlsruhe, Fritz-Haber-Weg 1, 76131 Karlsruhe, Germany.
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Jandt U, Schäfer D, Grass M, Rasche V. Automatic generation of time resolved motion vector fields of coronary arteries and 4D surface extraction using rotational x-ray angiography. Phys Med Biol 2008; 54:45-64. [PMID: 19060360 DOI: 10.1088/0031-9155/54/1/004] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
Rotational coronary angiography provides a multitude of x-ray projections of the contrast agent enhanced coronary arteries along a given trajectory with parallel ECG recording. These data can be used to derive motion information of the coronary arteries including vessel displacement and pulsation. In this paper, a fully automated algorithm to generate 4D motion vector fields for coronary arteries from multi-phase 3D centerline data is presented. The algorithm computes similarity measures of centerline segments at different cardiac phases and defines corresponding centerline segments as those with highest similarity. In order to achieve an excellent matching accuracy, an increasing number of bifurcations is included as reference points in an iterative manner. Based on the motion data, time-dependent vessel surface extraction is performed on the projections without the need of prior reconstruction. The algorithm accuracy is evaluated quantitatively on phantom data. The magnitude of longitudinal errors (parallel to the centerline) reaches approx. 0.50 mm and is thus more than twice as large as the transversal 3D extraction errors of the underlying multi-phase 3D centerline data. It is shown that the algorithm can extract asymmetric stenoses accurately. The feasibility on clinical data is demonstrated on five different cases. The ability of the algorithm to extract time-dependent surface data, e.g. for quantification of pulsating stenosis is demonstrated.
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Affiliation(s)
- Uwe Jandt
- Philips Research Europe-Hamburg, Roentgenstr. 24, 22335 Hamburg, Germany.
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Isola AA, Ziegler A, Koehler T, Niessen WJ, Grass M. Motion-compensated iterative cone-beam CT image reconstruction with adapted blobs as basis functions. Phys Med Biol 2008; 53:6777-97. [PMID: 18997267 DOI: 10.1088/0031-9155/53/23/009] [Citation(s) in RCA: 49] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
This paper presents a three-dimensional method to reconstruct moving objects from cone-beam X-ray projections using an iterative reconstruction algorithm and a given motion vector field. For the image representation, adapted blobs are used, which can be implemented efficiently as basis functions. Iterative reconstruction requires the calculation of line integrals (forward projections) through the image volume, which are compared with the actual measurements to update the image volume. In the existence of a divergent motion vector field, a change in the volumes of the blobs has to be taken into account in the forward and backprojections. An efficient method to calculate the line integral through the adapted blobs is proposed. It solves the problem, how to compensate for the divergence in the motion vector field on a grid of basis functions. The method is evaluated on two phantoms, which are subject to three different known motions. Moreover, a motion-compensated filtered back-projection reconstruction method is used, and the reconstructed images are compared. Using the correct motion vector field with the iterative motion-compensated reconstruction, sharp images are obtained, with a quality that is significantly better than gated reconstructions.
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Affiliation(s)
- A A Isola
- Philips Research Europe - Hamburg, Sector Technical Systems, Roentgenstr. 24-26, D-22335 Hamburg, Germany.
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van Stevendaal U, von Berg J, Lorenz C, Grass M. A motion-compensated scheme for helical cone-beam reconstruction in cardiac CT angiography. Med Phys 2008; 35:3239-51. [PMID: 18697549 DOI: 10.1118/1.2938733] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
Affiliation(s)
- U van Stevendaal
- Philips Research Europe - Hamburg, Sector Medical Imaging Systems, Röntgenstrasse 24-26, D-22335 Hamburg, Germany.
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Desbat L, Roux S, Grangeat P. Compensation of some time dependent deformations in tomography. IEEE TRANSACTIONS ON MEDICAL IMAGING 2007; 26:261-9. [PMID: 17304739 DOI: 10.1109/tmi.2006.889743] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/14/2023]
Abstract
This work concerns 2D + t dynamic tomography. We show that a much larger class of deformations than the affine transforms can be compensated analytically within filtered back projection algorithms in 2D parallel beam and fan beam dynamic tomography. We present numerical experiments on the Shepp and Logan phantom showing that nonaffine deformations can be compensated. A generalization to 3D cone beam tomography is proposed.
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Affiliation(s)
- Laurent Desbat
- TIMC-IMAG, UMR UJF-CNRS 5525, Joseph Fourier Grenoble University Faculté de Médecine, 38706 La Tronche, France.
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Desbat L, Rit S, Clackdoyle R, Mennessier C, Promayon E, Ntalampeki S. Algebraic and analytic reconstruction methods for dynamic tomography. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2007; 2007:726-730. [PMID: 18002059 DOI: 10.1109/iembs.2007.4352393] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/25/2023]
Abstract
In this work, we discuss algebraic and analytic approaches for dynamic tomography. We present a framework of dynamic tomography for both algebraic and analytic approaches. We finally present numerical experiments.
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Affiliation(s)
- L Desbat
- TIMC-IMAG, In3S, Medical Faculty, Grenoble University, Grenoble, France.
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Schäfer D, Borgert J, Rasche V, Grass M. Motion-compensated and gated cone beam filtered back-projection for 3-D rotational X-ray angiography. IEEE TRANSACTIONS ON MEDICAL IMAGING 2006; 25:898-906. [PMID: 16827490 DOI: 10.1109/tmi.2006.876147] [Citation(s) in RCA: 72] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/10/2023]
Abstract
This paper presents a method to reconstruct moving objects from cone beam X-ray projections acquired during a single rotational run using a given motion vector field. The method is applicable to voxel driven cone-beam filtered back-projection reconstruction approaches. Here, a formulation based on the algorithm of Feldkamp, Davis, and Kress (FDK) is presented. The motion correction is applied during the back-projection step by shifting the voxel to be reconstructed according to the motion vector field. The method is applied to three-dimensional (3-D) rotational X-ray angiography. Projections from a beating coronary heart phantom are simulated. Motion-compensated reconstructions with varying accuracy of the applied motion field are carried out for a late diastolic heart phase and compared to the reconstruction obtained with the standard FDK-method from projections of the corresponding motion-free model in the same heart phase. Furthermore, gated reconstructions are calculated by weighting the projections according to their cardiac phase without using a motion vector field. Different gating window widths are applied, and the reconstructions are compared. Using the correct motion field with the motion-compensated reconstruction, the image quality of the standard reconstruction from the corresponding motion-free coronary model can almost be recovered. The reconstructed image quality stays acceptable if the accuracy of the motion field sampling points is better than 1 mm. The gated reconstructions with a window width of 15%-20% of the cardiac cycle lead to superior results compared to nearest neighbor gating, especially for histogram based visualization and analysis. The motion-compensated reconstructions provide sharp images of the coronaries far surpassing the image quality of gated reconstructions.
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Lauritsch G, Boese J, Wigström L, Kemeth H, Fahrig R. Towards cardiac C-arm computed tomography. IEEE TRANSACTIONS ON MEDICAL IMAGING 2006; 25:922-34. [PMID: 16827492 DOI: 10.1109/tmi.2006.876166] [Citation(s) in RCA: 66] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/10/2023]
Abstract
Cardiac interventional procedures would benefit tremendously from sophisticated three-dimensional image guidance. Such procedures are typically performed with C-arm angiography systems, and tomographic imaging is currently available only by using preprocedural computed tomography (CT) or magnetic resonance imaging (MRI) scans. Recent developments in C-arm CT (Angiographic CT) allow three-dimensional (3-D) imaging of low contrast details with angiography imaging systems for noncardiac applications. We propose a new approach for cardiac imaging that takes advantage of this improved contrast resolution and is based on intravenous contrast injection. The method is an analogue to multisegment reconstruction in cardiac CT adapted to the much slower rotational speed of C-arm CT. Motion of the heart is considered in the reconstruction process by retrospective electrocardiogram (ECG)-gating, using only projections acquired at a similar heart phase. A series of N almost identical rotational acquisitions is performed at different heart phases to obtain a complete data set at a minimum temporal resolution of 1/N of the heart cycle time. First results in simulation, using an experimental phantom, and in preclinical in vivo studies showed that excellent image quality can be achieved.
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Abstract
We give an overview of the role of Physics in Medicine and Biology in the development of tomographic reconstruction algorithms. We focus on imaging modalities involving ionizing radiation, CT, PET and SPECT, and cover a wide spectrum of reconstruction problems, starting with classical 2D tomography in the 1970s up to 4D and 5D problems involving dynamic imaging of moving organs.
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Affiliation(s)
- Michel Defrise
- Department of Nuclear Medicine, Vrije Universiteit Brussel, AZ-VUB, B-1090 Brussels, Belgium
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30
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Blondel C, Malandain G, Vaillant R, Ayache N. Reconstruction of coronary arteries from a single rotational X-ray projection sequence. IEEE TRANSACTIONS ON MEDICAL IMAGING 2006; 25:653-63. [PMID: 16689269 DOI: 10.1109/tmi.2006.873224] [Citation(s) in RCA: 58] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/09/2023]
Abstract
Cardiovascular diseases remain the primary cause of death in developed countries. In most cases, exploration of possibly underlying coronary artery pathologies is performed using X-ray coronary angiography. Current clinical routine in coronary angiography is directly conducted in two-dimensional projection images from several static viewing angles. However, for diagnosis and treatment purposes, coronary artery reconstruction is highly suitable. The purpose of this study is to provide physicians with a three-dimensional (3-D) model of coronary arteries, e.g., for absolute 3-D measures for lesion assessment, instead of direct projective measures deduced from the images, which are highly dependent on the viewing angle. In this paper, we propose a novel method to reconstruct coronary arteries from one single rotational X-ray projection sequence. As a side result, we also obtain an estimation of the coronary artery motion. Our method consists of three main consecutive steps: 1) 3-D reconstruction of coronary artery centerlines, including respiratory motion compensation; 2) coronary artery four-dimensional motion computation; 3) 3-D tomographic reconstruction of coronary arteries, involving compensation for respiratory and cardiac motions. We present some experiments on clinical datasets, and the feasibility of a true 3-D Quantitative Coronary Analysis is demonstrated.
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Movassaghi B, Schaefer D, Grass M, Rasche V, Wink O, Garcia JA, Chen JY, Messenger JC, Carroll JD. 3D Reconstruction of Coronary Stents in Vivo Based on Motion Compensated X-Ray Angiograms. MEDICAL IMAGE COMPUTING AND COMPUTER-ASSISTED INTERVENTION – MICCAI 2006 2006; 9:177-84. [PMID: 17354770 DOI: 10.1007/11866763_22] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
Abstract
A new method is introduce for the three-dimensional (3D) reconstruction of the coronary stents in-vivo utilizing two-dimensional projection images acquired during rotational angiography (RA). The method is based on the application of motion compensated techniques to the acquired angiograms resulting in a temporal snapshot of the stent within the cardiac cycle. For the first time results of 3D reconstructed coronary stents in vivo, with high spatial resolution are presented. The proposed method allows for a comprehensive and unique quantitative 3D assessment of stent expansion that rivals current x-ray and intravascular ultrasound techniques.
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Affiliation(s)
- Babak Movassaghi
- Philips Research North America, 345 Scarborough Road, Briarcliff Manor, New York, USA.
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