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Le TA, Phu Bui M, Hadadian Y, Mohamed Gadelmowla K, Oh S, Im C, Hahn S, Yoon J. Toward Human-Scale Magnetic Particle Imaging: Development of the First System With Superconductor- Based Selection Coils. IEEE TRANSACTIONS ON MEDICAL IMAGING 2024; 43:4266-4280. [PMID: 38923478 DOI: 10.1109/tmi.2024.3419427] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/28/2024]
Abstract
Magnetic Particle Imaging (MPI) is an emerging tomographic modality that allows for precise three-dimensional (3D) mapping of magnetic nanoparticles (MNPs) concentration and distribution. Although significant progress has been made towards improving MPI since its introduction, scaling it up for human applications has proven challenging. High-quality images have been obtained in animal-scale MPI scanners with gradients up to 7 T/m/ , however, for MPI systems with bore diameters around 200 mm the gradients generated by electromagnets drop significantly to below 0.5 T/m/ . Given the current technological limitations in image reconstruction and the properties of available MNPs, these low gradients inherently impose limitations on improving MPI resolution for higher precision medical imaging. Utilizing superconductors stands out as a promising approach for developing a human-scale MPI system. In this study, we introduce, for the first time, a human-scale amplitude modulation (AM) MPI system with superconductor-based selection coils. The system achieves an unprecedented magnetic field gradient of up to 2.5 T/m/ within a 200 mm bore diameter, enabling large fields of view of mm3 at 2.5 T/m/ for 3D imaging. While obtained spatial resolution is in the order of previous animal-scale AM MPIs, incorporating superconductors for achieving such high gradients in a 200 mm bore diameter marks a major step toward clinical MPI.
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Wen J, An Y, Shao L, Yin L, Peng Z, Liu Y, Tian J, Du Y. Dual-channel end-to-end network with prior knowledge embedding for improving spatial resolution of magnetic particle imaging. Comput Biol Med 2024; 178:108783. [PMID: 38909446 DOI: 10.1016/j.compbiomed.2024.108783] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/02/2024] [Revised: 05/21/2024] [Accepted: 06/15/2024] [Indexed: 06/25/2024]
Abstract
Magnetic particle imaging (MPI) is an emerging non-invasive medical imaging tomography technology based on magnetic particles, with excellent imaging depth penetration, high sensitivity and contrast. Spatial resolution and signal-to-noise ratio (SNR) are key performance metrics for evaluating MPI, which are directly influenced by the gradient of the selection field (SF). Increasing the SF gradient can improve the spatial resolution of MPI, but will lead to a decrease in SNR. Deep learning (DL) methods may enable obtaining high-resolution images from low-resolution images to improve the MPI resolution under low gradient conditions. However, existing DL methods overlook the physical procedures contributing to the blurring of MPI images, resulting in low interpretability and hindering breakthroughs in resolution. To address this issue, we propose a dual-channel end-to-end network with prior knowledge embedding for MPI (DENPK-MPI) to effectively establish a latent mapping between low-gradient and high-gradient images, thus improving MPI resolution without compromising SNR. By seamlessly integrating MPI PSF with DL paradigm, DENPK-MPI leads to a significant improvement in spatial resolution performance. Simulation, phantom, and in vivo MPI experiments have collectively confirmed that our method can improve the resolution of low-gradient MPI images without sacrificing SNR, resulting in a decrease in full width at half maximum by 14.8%-23.8 %, and the accuracy of image reconstruction is 18.2 %-27.3 % higher than other DL methods. In conclusion, we propose a DL method that incorporates MPI prior knowledge, which can improve the spatial resolution of MPI without compromising SNR and possess improved biomedical application.
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Affiliation(s)
- Jiaxuan Wen
- CAS Key Laboratory of Molecular Imaging, Institute of Automation, Beijing, China; School of Artificial Intelligence, The University of Chinese Academy of Sciences, Beijing, China
| | - Yu An
- School of Engineering Medicine, Beihang University, Beijing, China; The Key Laboratory of Big Data-Based Precision Medicine (Beihang University), Ministry of Industry and Information Technology, Beijing, China
| | - Lizhi Shao
- CAS Key Laboratory of Molecular Imaging, Institute of Automation, Beijing, China; School of Artificial Intelligence, The University of Chinese Academy of Sciences, Beijing, China
| | - Lin Yin
- CAS Key Laboratory of Molecular Imaging, Institute of Automation, Beijing, China; School of Artificial Intelligence, The University of Chinese Academy of Sciences, Beijing, China
| | - Zhengyao Peng
- CAS Key Laboratory of Molecular Imaging, Institute of Automation, Beijing, China; School of Artificial Intelligence, The University of Chinese Academy of Sciences, Beijing, China
| | - Yanjun Liu
- School of Engineering Medicine, Beihang University, Beijing, China; The Key Laboratory of Big Data-Based Precision Medicine (Beihang University), Ministry of Industry and Information Technology, Beijing, China
| | - Jie Tian
- CAS Key Laboratory of Molecular Imaging, Institute of Automation, Beijing, China; School of Engineering Medicine, Beihang University, Beijing, China; The Key Laboratory of Big Data-Based Precision Medicine (Beihang University), Ministry of Industry and Information Technology, Beijing, China
| | - Yang Du
- CAS Key Laboratory of Molecular Imaging, Institute of Automation, Beijing, China; School of Artificial Intelligence, The University of Chinese Academy of Sciences, Beijing, China.
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Li G, Liu Y, Qian Z, Xiong F, Lei S, Feng Y, Li J, Du Y, Tian J, An Y. Fast System Matrix Generation Based on Single Angle Calibration in Open-Sided Field Free Line Magnetic Particle Imaging. IEEE Trans Biomed Eng 2024; 71:1209-1218. [PMID: 37938949 DOI: 10.1109/tbme.2023.3331028] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2023]
Abstract
OBJECTIVE Open-sided field-free line magnetic particle imaging (OS FFL MPI) is a novel medical imaging system configuration that has received significant attention in recent years. However, the measurement-based system matrix (SM) image reconstruction for OS FFL MPI typically requires multiple angle calibration (MAC), which is time-consuming in practice. METHODS To address this issue, we propose a fast 2D SM generation method that requires only a single angle calibration (SAC). The SAC method exploits the rotational invariance of the system function. Based on the measured single angle system function, the system function is rotated to generate system functions at other angles, and then the SM for image reconstruction is constructed. Then, we conducted various simulation experiments and built an OS FFL MPI scanner to evaluate the proposed SAC method. RESULTS The experiments demonstrating the effectiveness of SAC in reducing calibration workload, requiring fewer scanning numbers while maintaining a similar image reconstruction quality compared to MAC method. Furthermore, the SM generated by SAC produces consistent imaging results with the SM generated by MAC, regardless of the interpolation algorithms, the number of rotation angles, or the signal-to-noise ratios employed in phantom imaging experiments. CONCLUSION SAC has been experimentally verified to reduce acquisition time while maintaining accurate and robust reconstruction performance. SIGNIFICANCE The significance of SAC lies in its contribution to improving calibration efficiency in OS FFL MPI, potentially facilitating the implementation of MPI in a wider range of applications.
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Shang Y, Liu J, Wang Y. Fusion Networks of CNN and Transformer with Channel Attention for Accurate Tumor Imaging in Magnetic Particle Imaging. BIOLOGY 2023; 13:2. [PMID: 38275723 PMCID: PMC11154287 DOI: 10.3390/biology13010002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/09/2023] [Revised: 12/05/2023] [Accepted: 12/11/2023] [Indexed: 01/27/2024]
Abstract
BACKGROUND Magnetic Particle Imaging (MPI) is an emerging molecular imaging technique. However, since X-space reconstruction ignores system properties, it can lead to blurring of the reconstructed image, posing challenges for accurate quantification. To address this issue, we propose the use of deep learning to remove the blurry artifacts; (2) Methods: Our network architecture consists of a combination of Convolutional Neural Network (CNN) and Transformer. The CNN utilizes convolutional layers to automatically extract pixel-level local features and reduces the size of feature maps through pooling layers, effectively capturing local information within the images. The Transformer module is responsible for extracting contextual features from the images and efficiently capturing long-range dependencies, enabling a more effective modeling of global features in the images. By combining the features extracted by both CNN and Transformer, we capture both global and local features simultaneously, thereby improving the quality of reconstructed images; (3) Results: Experimental results demonstrate that the network effectively removes blurry artifacts from the images, and it exhibits high accuracy in precise tumor quantification. The proposed method shows superior performance over the state-of-the-art methods; (4) Conclusions: This bears significant implications for the image quality improvement and clinical application of MPI technology.
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Affiliation(s)
- Yaxin Shang
- School of Computer and Information Technology, Beijing Jiaotong University, Beijing 100044, China;
| | - Jie Liu
- School of Computer and Information Technology, Beijing Jiaotong University, Beijing 100044, China;
| | - Yueqi Wang
- CAS Key Laboratory of Molecular Imaging, Beijing Key Laboratory of Molecular Imaging, Institute of Automation, Beijing 100190, China
- University of Chinese Academy of Sciences, Beijing 100080, China
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Shen Y, Zhang L, Shang Y, Jia G, Yin L, Zhang H, Tian J, Yang G, Hui H. An adaptive multi-frame parallel iterative method for accelerating real-time magnetic particle imaging reconstruction. Phys Med Biol 2023; 68:245016. [PMID: 37890461 DOI: 10.1088/1361-6560/ad078d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2023] [Accepted: 10/27/2023] [Indexed: 10/29/2023]
Abstract
Objective. Real-time reconstruction of magnetic particle imaging (MPI) shows promising clinical applications. However, prevalent reconstruction methods are mainly based on serial iteration, which causes large delay in real-time reconstruction. In order to achieve lower latency in real-time MPI reconstruction, we propose a parallel method for accelerating the speed of reconstruction methods.Approach. The proposed method, named adaptive multi-frame parallel iterative method (AMPIM), enables the processing of multi-frame signals to multi-frame MPI images in parallel. To facilitate parallel computing, we further propose an acceleration strategy for parallel computation to improve the computational efficiency of our AMPIM.Main results. OpenMPIData was used to evaluate our AMPIM, and the results show that our AMPIM improves the reconstruction frame rate per second of real-time MPI reconstruction by two orders of magnitude compared to prevalent iterative algorithms including the Kaczmarz algorithm, the conjugate gradient normal residual algorithm, and the alternating direction method of multipliers algorithm. The reconstructed image using AMPIM has high contrast-to-noise with reducing artifacts.Significance. The AMPIM can parallelly optimize least squares problems with multiple right-hand sides by exploiting the dimension of the right-hand side. AMPIM has great potential for application in real-time MPI imaging with high imaging frame rate.
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Affiliation(s)
- Yusong Shen
- School of Computer Science and Engineering, Southeast University, Nanjing, People's Republic of China
| | - Liwen Zhang
- CAS Key Laboratory of Molecular Imaging, Institute of Automation, Chinese Academy of Sciences, Beijing, People's Republic of China
- Beijing Key Laboratory of Molecular Imaging, Beijing, 100190, People's Republic of China
- University of Chinese Academy of Sciences, Beijing, 100080, People's Republic of China
| | - Yaxin Shang
- School of Computer and Information Technology, Beijing Jiaotong University, Beijing, People's Republic of China
| | - Guang Jia
- School of Computer Science and Technology, Xidian University, Xi'an Shaanxi, People's Republic of China
| | - Lin Yin
- CAS Key Laboratory of Molecular Imaging, Institute of Automation, Chinese Academy of Sciences, Beijing, People's Republic of China
- Beijing Key Laboratory of Molecular Imaging, Beijing, 100190, People's Republic of China
- University of Chinese Academy of Sciences, Beijing, 100080, People's Republic of China
| | - Hui Zhang
- School of Engineering Medicine, Beihang University, Beijing, People's Republic of China
- Key Laboratory of Big Data-Based Precision Medicine, Ministry of Industry and Information Technology of the People's Republic of China, Beijing, People's Republic of China
| | - Jie Tian
- School of Computer Science and Engineering, Southeast University, Nanjing, People's Republic of China
- CAS Key Laboratory of Molecular Imaging, Institute of Automation, Chinese Academy of Sciences, Beijing, People's Republic of China
- Beijing Key Laboratory of Molecular Imaging, Beijing, 100190, People's Republic of China
- School of Engineering Medicine, Beihang University, Beijing, People's Republic of China
- Key Laboratory of Big Data-Based Precision Medicine, Ministry of Industry and Information Technology of the People's Republic of China, Beijing, People's Republic of China
| | - Guanyu Yang
- School of Computer Science and Engineering, Southeast University, Nanjing, People's Republic of China
| | - Hui Hui
- CAS Key Laboratory of Molecular Imaging, Institute of Automation, Chinese Academy of Sciences, Beijing, People's Republic of China
- Beijing Key Laboratory of Molecular Imaging, Beijing, 100190, People's Republic of China
- University of Chinese Academy of Sciences, Beijing, 100080, People's Republic of China
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Shang Y, Liu J, Liu Y, Zhang B, Wu X, Zhang L, Tong W, Hui H, Tian J. Anisotropic edge-preserving network for resolution enhancement in unidirectional Cartesian magnetic particle imaging. Phys Med Biol 2023; 68. [PMID: 36689774 DOI: 10.1088/1361-6560/acb584] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2022] [Accepted: 01/23/2023] [Indexed: 01/24/2023]
Abstract
Objective. Magnetic particle imaging (MPI) is a novel imaging modality. It is crucial to acquire accurate localization of the superparamagnetic iron oxide nanoparticles distributions in MPI. However, the spatial resolution of unidirectional Cartesian trajectory MPI exhibits anisotropy, which blurs the boundaries of MPI images and makes precise localization difficult. In this paper, we propose an anisotropic edge-preserving network (AEP-net) to alleviate the anisotropic resolution of MPI.Methods. AEP-net resolve the resolution anisotropy by constructing an asymmertic convolution. To recover the edge information, we design the uncertainty region module. In addition, we evaluated the performance of the proposed AEP-net model by using simulations and experimental data.Results. The results show that the AEP-net model alleviates the anisotropy of the unidirectional Cartesian trajectory and preserves edge details in the MPI image. By comparing the visualization results and the metrics, we demonstrate that our method is superior to other methods.Significance. The proposed method produces accurate visualization in unidirectional Cartesian devices and promotes accurate quantization, which promote the biomedical applications using MPI.
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Affiliation(s)
- Yaxin Shang
- School of Computer and Information Technology, Beijing Jiaotong University, Beijing, 100044, People's Republic of China
| | - Jie Liu
- School of Computer and Information Technology, Beijing Jiaotong University, Beijing, 100044, People's Republic of China
| | - Yanjun Liu
- School of Biological Science and Medical Engineering, Beihang University, Beijing, 100191, People's Republic of China
| | - Bo Zhang
- School of Biological Science and Medical Engineering, Beihang University, Beijing, 100191, People's Republic of China
| | - Xiangjun Wu
- School of Biological Science and Medical Engineering, Beihang University, Beijing, 100191, People's Republic of China
| | - Liwen Zhang
- CAS Key Laboratory of Molecular Imaging, Beijing Key Laboratory of Molecular Imaging, Institute of Automation, Beijing, 100190, People's Republic of China.,The University of Chinese Academy of Sciences, Beijing, 100080, People's Republic of China
| | - Wei Tong
- Senior Department of Cardiology, the Sixth Medical Center of PLA General Hospital, Beijing, 100036, People's Republic of China
| | - Hui Hui
- CAS Key Laboratory of Molecular Imaging, Beijing Key Laboratory of Molecular Imaging, Institute of Automation, Beijing, 100190, People's Republic of China.,The University of Chinese Academy of Sciences, Beijing, 100080, People's Republic of China
| | - Jie Tian
- CAS Key Laboratory of Molecular Imaging, Beijing Key Laboratory of Molecular Imaging, Institute of Automation, Beijing, 100190, People's Republic of China.,Beijing Advanced Innovation Center for Big Data-Based Precision Medicine, School of Engineering Medicine, Beihang University, Beijing, 100191, People's Republic of China
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