1
|
Decoene I, Svitina H, Belal Hamed M, Economou A, Stegen S, Luyten FP, Papantoniou I. Callus organoids reveal distinct cartilage to bone transition mechanisms across donors and a role for biological sex. Bone Res 2025; 13:41. [PMID: 40140357 PMCID: PMC11947321 DOI: 10.1038/s41413-025-00418-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2024] [Revised: 01/29/2025] [Accepted: 02/20/2025] [Indexed: 03/28/2025] Open
Abstract
Clinical translation of tissue-engineered advanced therapeutic medicinal products is hindered by a lack of patient-dependent and independent in-process biological quality controls that are reflective of in vivo outcomes. Recent insights into the mechanism of native bone repair highlight a robust path dependence. Organoid-based bottom-up developmental engineering mimics this path-dependence to design personalized living implants scaffold-free, with in-build outcome predictability. Yet, adequate (noninvasive) quality metrics of engineered tissues are lacking. Moreover, insufficient insight into the role of donor variability and biological sex as influencing factors for the mechanism toward bone repair hinders the implementation of such protocols for personalized bone implants. Here, male and female bone-forming organoids were compared to non-bone-forming organoids regarding their extracellular matrix composition, transcriptome, and secreted proteome signatures to directly link in vivo outcomes to quality metrics. As a result, donor variability in bone-forming callus organoids pointed towards two distinct pathways to bone, through either a hypertrophic cartilage or a fibrocartilaginous template. The followed pathway was determined early, as a biological sex-dependent activation of distinct progenitor populations. Independent of donor or biological sex, a cartilage-to-bone transition was driven by a common panel of secreted factors that played a role in extracellular matrix remodeling, mineralization, and attraction of vasculature. Hence, the secreted proteome is a source of noninvasive biomarkers that report on biological potency and could be the missing link toward data-driven decision-making in organoid-based bone tissue engineering.
Collapse
Affiliation(s)
- Isaak Decoene
- Skeletal Biology and Engineering Research Center, Department of Development and Regeneration, KU Leuven, O&N1, Herestraat 49, box 813, 3000, Leuven, Belgium
- Prometheus Translational Division of Skeletal Tissue Engineering, KU Leuven, O&N1, Herestraat 49, box 813, 3000, Leuven, Belgium
| | - Hanna Svitina
- Skeletal Biology and Engineering Research Center, Department of Development and Regeneration, KU Leuven, O&N1, Herestraat 49, box 813, 3000, Leuven, Belgium
- Prometheus Translational Division of Skeletal Tissue Engineering, KU Leuven, O&N1, Herestraat 49, box 813, 3000, Leuven, Belgium
| | - Mohamed Belal Hamed
- Laboratory of Molecular Bacteriology, Department of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven, Herestraat 49, 3000, Leuven, Belgium
- Molecular Biology Department, National Research Centre, 33 El Buhouth st, Dokii, 12622, Cairo, Egypt
- Department of Neurosciences, Leuven Research Institute for Neuroscience and Disease (LIND), KU Leuven, VIB-KU Leuven Center for Brain & Disease Research, Herestraat, 3000, Leuven, Belgium
| | - Anastassios Economou
- Laboratory of Molecular Bacteriology, Department of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven, Herestraat 49, 3000, Leuven, Belgium
| | - Steve Stegen
- Prometheus Translational Division of Skeletal Tissue Engineering, KU Leuven, O&N1, Herestraat 49, box 813, 3000, Leuven, Belgium
- Laboratory of Clinical and Experimental Endocrinology, Department of Chronic Diseases and Metabolism (CHROMETA), KU Leuven, Herestraat 49, 3000, Leuven, Belgium
| | - Frank P Luyten
- Skeletal Biology and Engineering Research Center, Department of Development and Regeneration, KU Leuven, O&N1, Herestraat 49, box 813, 3000, Leuven, Belgium
- Prometheus Translational Division of Skeletal Tissue Engineering, KU Leuven, O&N1, Herestraat 49, box 813, 3000, Leuven, Belgium
| | - Ioannis Papantoniou
- Skeletal Biology and Engineering Research Center, Department of Development and Regeneration, KU Leuven, O&N1, Herestraat 49, box 813, 3000, Leuven, Belgium.
- Prometheus Translational Division of Skeletal Tissue Engineering, KU Leuven, O&N1, Herestraat 49, box 813, 3000, Leuven, Belgium.
- Institute for Chemical Engineering Sciences, Foundation for Research and Technology-Hellas (FORTH), Stadiou Street, Platani, box 1414, 26504, Patras, Greece.
| |
Collapse
|
2
|
Shao Y, Du S, Huang D. Advancements in Applications of Manufacturing and Measurement Sensors. SENSORS (BASEL, SWITZERLAND) 2025; 25:454. [PMID: 39860824 PMCID: PMC11769364 DOI: 10.3390/s25020454] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/09/2025] [Accepted: 01/10/2025] [Indexed: 01/27/2025]
Abstract
Manufacturing and measurement sensors are an integral part of advanced manufacturing technology, which requires sensors that can precisely capture and analyze various physical parameters during the manufacturing process [...].
Collapse
Affiliation(s)
- Yiping Shao
- College of Mechanical Engineering, Zhejiang University of Technology, Hangzhou 310023, China;
- Ningbo Yongxin Optics Co., Ltd., Ningbo 315040, China
| | - Shichang Du
- School of Mechanical Engineering, Shanghai Jiao Tong University, No. 800 Dongchuan Road, Shanghai 200240, China
| | - Delin Huang
- School of Intelligent Manufacturing and Control Engineering, Shanghai Polytechnic University, Shanghai 201209, China;
| |
Collapse
|
3
|
Singh N, Srivastava K, Kumar A, Yadav N, Yadav A, Dubey S, Singh R, Gehlot A, Verma AS, Gupta N, Kumar T, Wu Y, Hongyu Z, Mondal A, Pandey K, Brajpuriya R, Kumar S, Gupta R. Challenges and opportunities in engineering next-generation 3D microelectronic devices: improved performance and higher integration density. NANOSCALE ADVANCES 2024:d4na00578c. [PMID: 39569337 PMCID: PMC11575647 DOI: 10.1039/d4na00578c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/14/2024] [Accepted: 07/29/2024] [Indexed: 11/22/2024]
Abstract
In recent years, nanotechnology and materials science have evolved and matured, making it increasingly easier to design and fabricate next-generation 3D microelectronics. The process has changed drastically from traditional 2D microelectronics, resulting in improved performance, higher integration density, and new functionalities. As applications become more complex and power-intensive, this technology can address the demands of high-performance computing, advanced sensors, and cutting-edge communication systems via wearable, flexible devices, etc. To manufacture higher-density microelectronics, recent advances in the fabrication of such 3D devices are discussed. Furthermore, the paper stresses the importance of novel materials and architectures, such as monolithic 3D integration and heterogeneous integration, in overcoming these challenges. We emphasize the importance of addressing complex issues to achieve better performance and higher integration density, which will play an important role in shaping the next generation of microelectronic devices. The multifaceted challenges involved in developing next-generation 3D microelectronic devices are also highlighted.
Collapse
Affiliation(s)
- Niharika Singh
- Department of Informatics, School of Computer Science, University of Petroleum & Energy Studies Dehradun-248007 Uttarakhand India
| | - Kingshuk Srivastava
- Department of CSE, Vivekananda Global University Jaipur Rajasthan 303012 India
| | - Ajay Kumar
- Jaypee Institute of Information Technology Noida Uttar Pradesh India
| | - Neha Yadav
- Center for Advanced Laser Manufacturing (CALM), Shandong University of Technology Zibo 255000 P. R. China
| | - Ashish Yadav
- Center for Advanced Laser Manufacturing (CALM), Shandong University of Technology Zibo 255000 P. R. China
| | - Santosh Dubey
- Department of Physics, School of Engineering, University of Petroleum & Energy Studies Dehradun 248007 Uttarakhand India
| | - Rajesh Singh
- Uttaranchal Institute of Technology, Uttaranchal University Dehradun 248007 India
- Department of Project Management, Universidad Internacional Iberoamericana Campeche 24560 CP Mexico
| | - Anita Gehlot
- Uttaranchal Institute of Technology, Uttaranchal University Dehradun 248007 India
- Department of Project Management, Universidad Internacional Iberoamericana Campeche 24560 CP Mexico
| | - Ajay Singh Verma
- Division of Research and Innovation, School of Applied and Life Sciences, Uttaranchal University Dehradun Uttarakhand 248007 India
| | - Neha Gupta
- Applied Science Department, Greater Noida Institute of Technology Greater Noida 201310 India
| | - Tanuj Kumar
- Department of Nanoscience & Materials, Central University of Jammu Jammu 181143 India
| | - Yongling Wu
- Center for Advanced Laser Manufacturing (CALM), Shandong University of Technology Zibo 255000 P. R. China
| | - Zheng Hongyu
- Center for Advanced Laser Manufacturing (CALM), Shandong University of Technology Zibo 255000 P. R. China
| | - Aniruddha Mondal
- Department of Physics, National Institute of Technology Durgapur Durgapur 713209 West Bengal India
| | - Kailash Pandey
- Department of Physics, School of Engineering, University of Petroleum & Energy Studies Dehradun 248007 Uttarakhand India
| | - Ranjeet Brajpuriya
- Department of Physics, School of Engineering, University of Petroleum & Energy Studies Dehradun 248007 Uttarakhand India
| | - Shalendra Kumar
- Department of Physics, School of Engineering, University of Petroleum & Energy Studies Dehradun 248007 Uttarakhand India
| | - Rajeev Gupta
- Department of Physics, School of Engineering, University of Petroleum & Energy Studies Dehradun 248007 Uttarakhand India
| |
Collapse
|
4
|
Austin K, Torres JA, Waters JDV, Balog ERM, Halpern JM, Pantazes RJ. An Orthogonal Workflow of Electrochemical, Computational, and Thermodynamic Methods Reveals Limitations of Using a Literature-Reported Insulin Binding Peptide in Biosensors. ACS OMEGA 2024; 9:39219-39231. [PMID: 39310205 PMCID: PMC11411520 DOI: 10.1021/acsomega.4c06481] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/13/2024] [Revised: 08/23/2024] [Accepted: 08/29/2024] [Indexed: 09/25/2024]
Abstract
Developing a continuous insulin-monitoring biosensor is of great importance for both the cellular biomanufacturing industry and for treating diabetes mellitus. Such a sensor needs to be able to effectively monitor insulin across a range of temperatures and pHs and with varying concentrations of competing analytes. One of the two main components of any biosensor is the recognition element, which is responsible for interacting with the molecule of interest. Prior literature describes an insulin-binding peptide (IBP) that was reported to bind to insulin with a 3 nM affinity. Here, we used orthogonal and complementary electrochemical, computational, and thermodynamic characterization methods to evaluate IBP's appropriateness for use in a biosensor. Unfortunately, all three methods failed to produce evidence of IBP-insulin binding either on surfaces or in solution. This indicates that the binding exhibited in previous reports is likely restricted to a limited set of conditions and that IBP is not a suitable recognition element for a continuous insulin biosensor.
Collapse
Affiliation(s)
- Katherine Austin
- Department
of Chemical Engineering and Bioengineering, University of New Hampshire, Durham, New Hampshire 03824, United States
| | - Jazmine A. Torres
- Department
of Chemical Engineering, Auburn University, Auburn, Alabama 36849, United States
| | - Jeffery D. V. Waters
- School
of Molecular and Physical Sciences, University
of New England, Biddeford, Maine 04005, United States
| | - Eva Rose M. Balog
- School
of Molecular and Physical Sciences, University
of New England, Biddeford, Maine 04005, United States
| | - Jeffrey M. Halpern
- Department
of Chemical Engineering and Bioengineering, University of New Hampshire, Durham, New Hampshire 03824, United States
| | - Robert J. Pantazes
- Department
of Chemical Engineering, Auburn University, Auburn, Alabama 36849, United States
| |
Collapse
|
5
|
Elkadi OA, Abinzano F, Nippolainen E, González OB, Levato R, Malda J, Afara IO. Non-neotissue constituents as underestimated confounders in the assessment of tissue engineered constructs by near-infrared spectroscopy. Mater Today Bio 2024; 24:100879. [PMID: 38130429 PMCID: PMC10733684 DOI: 10.1016/j.mtbio.2023.100879] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2023] [Revised: 11/15/2023] [Accepted: 11/22/2023] [Indexed: 12/23/2023] Open
Abstract
Non-destructive assessments are required for the quality control of tissue-engineered constructs and the optimization of the tissue culture process. Near-infrared (NIR) spectroscopy coupled with machine learning (ML) provides a promising approach for such assessment. However, due to its nonspecific nature, each spectrum incorporates information on both neotissue and non-neotissue constituents of the construct; the effect of these constituents on the NIR-based assessments of tissue-engineered constructs has been overlooked in previous studies. This study investigates the effect of scaffolds, growth factors, and buffers on NIR-based assessments of tissue-engineered constructs. To determine if these non-neotissue constituents have a measurable effect on the NIR spectra of the constructs that can introduce bias in their assessment, nine ML algorithms were evaluated in classifying the NIR spectra of engineered cartilage according to the scaffold used to prepare the constructs, the growth factors added to the culture media, and the buffers used for storing the constructs. The effect of controlling for these constituents was also evaluated using controlled and uncontrolled NIR-based ML models for predicting tissue maturity as an example of neotissue-related properties of interest. Samples used in this study were prepared using norbornene-modified hyaluronic acid scaffolds with or without the conjugation of an N-cadherin mimetic peptide. Selected samples were supplemented with transforming growth factor-beta1 or bone morphogenetic protein-9 growth factor. Some samples were frozen in cell lysis buffer, while the remaining samples were frozen in PBS until required for NIR analysis. The ML models for classifying the spectra of the constructs according to the four constituents exhibited high to fair performances, with F1 scores ranging from 0.9 to 0.52. Moreover, controlling for the four constituents significantly improved the performance of the models for predicting tissue maturity, with improvement in F1 scores ranging from 0.09 to 0.77. In conclusion, non-neotissue constituents have measurable effects on the NIR spectra of tissue-engineered constructs that can be detected by ML algorithms and introduce bias in the assessment of the constructs by NIR spectroscopy. Therefore, controlling for these constituents is necessary for reliable NIR-based assessments of tissue-engineered constructs.
Collapse
Affiliation(s)
- Omar Anwar Elkadi
- Department of Technical Physics, University of Eastern Finland, Kuopio, Finland
| | - Florencia Abinzano
- Department of Orthopedics, University Medical Center Utrecht, Utrecht University, 3584 CX, Utrecht, the Netherlands
| | - Ervin Nippolainen
- Department of Technical Physics, University of Eastern Finland, Kuopio, Finland
| | - Ona Bach González
- Department of Orthopedics, University Medical Center Utrecht, Utrecht University, 3584 CX, Utrecht, the Netherlands
| | - Riccardo Levato
- Department of Orthopedics, University Medical Center Utrecht, Utrecht University, 3584 CX, Utrecht, the Netherlands
- Department of Clinical Sciences, Faculty of Veterinary Medicine, Utrecht University, 3584 CT, Utrecht, the Netherlands
| | - Jos Malda
- Department of Orthopedics, University Medical Center Utrecht, Utrecht University, 3584 CX, Utrecht, the Netherlands
- Department of Clinical Sciences, Faculty of Veterinary Medicine, Utrecht University, 3584 CT, Utrecht, the Netherlands
| | - Isaac O. Afara
- Department of Technical Physics, University of Eastern Finland, Kuopio, Finland
| |
Collapse
|