1
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Kalapos MP, de Bari L. The evolutionary arch of bioenergetics from prebiotic mechanisms to the emergence of a cellular respiratory chain. Biosystems 2024; 244:105288. [PMID: 39128646 DOI: 10.1016/j.biosystems.2024.105288] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2024] [Revised: 08/07/2024] [Accepted: 08/07/2024] [Indexed: 08/13/2024]
Abstract
This article proposes an evolutionary trajectory for the development of biological energy producing systems. Six main stages of energy producing system evolution are described, from early evolutionary pyrite-pulled mechanism through the Last Universal Common Ancestor (LUCA) to contemporary systems. We define the Last Pure Chemical Entity (LPCE) as the last completely non-enzymatic entity. LPCE could have had some life-like properties, but lacked genetic information carriers, thus showed greater instability and environmental dependence than LUCA. A double bubble model is proposed for compartmentalization and cellularization as a prerequisite to both highly efficient protein synthesis and transmembrane ion-gradient. The article finds that although LUCA predominantly functioned anaerobically, it was a non-exclusive anaerobe, and sulfur dominated metabolism preceded phosphate dominated one.
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Affiliation(s)
| | - Lidia de Bari
- Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies, Bari, Italy
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2
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Khawaja N, Hortal Sánchez L, O'Sullivan TR, Bloema J, Napoleoni M, Klenner F, Beinlich A, Hillier J, John T, Postberg F. Laboratory characterization of hydrothermally processed oligopeptides in ice grains emitted by Enceladus and Europa. PHILOSOPHICAL TRANSACTIONS. SERIES A, MATHEMATICAL, PHYSICAL, AND ENGINEERING SCIENCES 2024; 382:20230201. [PMID: 38736335 DOI: 10.1098/rsta.2023.0201] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/12/2023] [Accepted: 01/30/2024] [Indexed: 05/14/2024]
Abstract
The Cassini mission provided evidence for a global subsurface ocean and ongoing hydrothermal activity on Enceladus, based on results from Cassini's mass spectrometers. Laboratory simulations of hydrothermal conditions on icy moons are needed to further constrain the composition of ejected ice grains containing hydrothermally altered organic material. Here, we present results from our newly established facility to simulate the processing of ocean material within the temperature range 80-150°C and the pressure range 80-130 bar, representing conditions suggested for the water-rock interface on Enceladus. With this new facility, we investigate the hydrothermal processing of triglycine (GGG) peptide and, for the first time, analyse the extracted samples using laser-induced liquid beam ion desorption (LILBID) mass spectrometry, a laboratory analogue for impact ionization mass spectrometry of ice grains in space. We outline an approach to elucidate hydrothermally processed GGG in ice grains ejected from icy moons based on characteristic differences between GGG anion and cation mass spectra. These differences are linked to hydrothermal processing and thus provide a fingerprint of hydrothermal activity on extraterrestrial bodies. These results will serve as important guidelines for biosignatures potentially obtained by a future Enceladus mission and the SUrface Dust Analyzer (SUDA) instrument onboard Europa Clipper. This article is part of the theme issue 'Dust in the Solar System and beyond'.
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Affiliation(s)
- Nozair Khawaja
- Department of Planetary Sciences and Remote Sensing, Institut für Geologische Wissenschaften, Freie Universität Berlin , Malteserstraße, Berlin 12249, Germany
- Institute of Space Systems, University of Stuttgart , Stuttgart 70569, Germany
| | - Lucía Hortal Sánchez
- Department of Planetary Sciences and Remote Sensing, Institut für Geologische Wissenschaften, Freie Universität Berlin , Malteserstraße, Berlin 12249, Germany
| | - Thomas R O'Sullivan
- Department of Planetary Sciences and Remote Sensing, Institut für Geologische Wissenschaften, Freie Universität Berlin , Malteserstraße, Berlin 12249, Germany
| | - Judith Bloema
- Department of Planetary Sciences and Remote Sensing, Institut für Geologische Wissenschaften, Freie Universität Berlin , Malteserstraße, Berlin 12249, Germany
| | - Maryse Napoleoni
- Department of Planetary Sciences and Remote Sensing, Institut für Geologische Wissenschaften, Freie Universität Berlin , Malteserstraße, Berlin 12249, Germany
| | - Fabian Klenner
- Department of Earth and Space Sciences, University of Washington , Seattle, WA 98195, USA
| | - Andreas Beinlich
- Department of Mineralogy and Petrology, Institut für Geologische Wissenschaften, Freie Universität Berlin , Malteserstraße, Berlin 12249, Germany
| | - Jon Hillier
- Department of Planetary Sciences and Remote Sensing, Institut für Geologische Wissenschaften, Freie Universität Berlin , Malteserstraße, Berlin 12249, Germany
| | - Timm John
- Department of Mineralogy and Petrology, Institut für Geologische Wissenschaften, Freie Universität Berlin , Malteserstraße, Berlin 12249, Germany
| | - Frank Postberg
- Department of Planetary Sciences and Remote Sensing, Institut für Geologische Wissenschaften, Freie Universität Berlin , Malteserstraße, Berlin 12249, Germany
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3
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Leone G, Tanaka H. Igneous processes in the small bodies of the Solar System II: Small satellites and dwarf planets. iScience 2024; 27:109613. [PMID: 38638563 PMCID: PMC11024919 DOI: 10.1016/j.isci.2024.109613] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/20/2024] Open
Abstract
Evidence of hot and cold igneous processes has been reported in small satellites and dwarf planets of the Solar System. Olivine and pyroxenes were detected in the spectral bands of both small satellites and dwarf planets. The aqueously altered form of olivine and serpentine has been detected in the spectrums of Ceres and Miranda hinting at possible hydrothermal processes in their interiors. Once more, the ubiquitous distribution of 26Al in the planetary nebula, then evolving in the protoplanetary disk, contributed to the primordial widespread heating. Volcanism, or cryovolcanism, then developed only in those bodies where long-lived radiogenic elements, and/or tidal processes, were available.
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Affiliation(s)
- Giovanni Leone
- Instituto de Investigación en Astronomía y Ciencias Planetarias, Universidad de Atacama, Copiapó 153000, Región de Atacama, Chile
- Virtual Muography Institute, Global, Tokyo, Japan
| | - Hiroyuki Tanaka
- Virtual Muography Institute, Global, Tokyo, Japan
- International Muography Research Organization (MUOGRAPHIX), The University of Tokyo, Tokyo, Japan
- Earthquake Research Institute, The University of Tokyo, 1-1-1 Yayoi, Bunkyo, Tokyo 113 -0032, Japan
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4
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Sephton MA, Freeman K, Hays L, Thiessen F, Benison K, Carrier B, Dworkin JP, Glamoclija M, Gough R, Onofri S, Peterson R, Quinn R, Russell S, Stüeken EE, Velbel M, Zolotov M. Thresholds of Temperature and Time for Mars Sample Return: Final Report of the Mars Sample Return Temperature-Time Tiger Team. ASTROBIOLOGY 2024; 24:443-488. [PMID: 38768433 DOI: 10.1089/ast.2023.0098] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/22/2024]
Affiliation(s)
- Mark A Sephton
- Imperial College London, Earth Science and Engineering, South Kensington Campus, London, UK
| | - Kate Freeman
- The Pennsylvania State University, Geosciences, University Park, Pennsylvania, USA
| | - Lindsay Hays
- NASA Headquarters, Mars Sample Return Program, Washington, DC, USA
| | - Fiona Thiessen
- European Space Research and Technology Centre, Noordwijk, South Holland, Netherlands
| | - Kathleen Benison
- West Virginia University, Department of Geology and Geography, Morgantown, West Virginia, USA
| | - Brandi Carrier
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California, USA
| | - Jason P Dworkin
- NASA Goddard Space Flight Center, Astrochemistry, Greenbelt, Maryland, USA
| | - Mihaela Glamoclija
- Rutgers University Newark College of Arts and Sciences, Earth and Environmental Sciences, Newark, New Jersey, USA
| | - Raina Gough
- University of Colorado, Department of Chemistry and Biochemistry, Boulder, Colorado, USA
| | - Silvano Onofri
- University of Tuscia, Department of Ecological and Biological Sciences, Largo dell'Università snc Viterbo, Italy
| | | | - Richard Quinn
- NASA Ames Research Center, Moffett Field, California, USA
| | - Sara Russell
- Natural History Museum, Department of Earth Sciences, London, UK
| | - Eva E Stüeken
- University of St Andrews, School of Earth and Environmental Sciences, St Andrews, Fife, UK
| | - Michael Velbel
- Michigan State University, Earth and Environmental Sciences, East Lansing, Michigan, USA
- Smithsonian Institution, Department of Mineral Sciences, National Museum of Natural History, Washington, DC, USA
| | - Mikhail Zolotov
- Arizona State University, School of Earth and Space Exploration, Tempe, Arizona, USA
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5
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Song Y, Beyazay T, Tüysüz H. Effect of Alkali- and Alkaline-Earth-Metal Promoters on Silica-Supported Co-Fe Alloy for Autocatalytic CO 2 Fixation. Angew Chem Int Ed Engl 2024; 63:e202316110. [PMID: 38127486 DOI: 10.1002/anie.202316110] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2023] [Revised: 12/19/2023] [Accepted: 12/21/2023] [Indexed: 12/23/2023]
Abstract
Hydrothermal vents harbor numerous microbial communities rich in reduced carbon species such as formate, acetate, and hydrocarbons. Such essential chemicals for life are produced by H2 -dependent CO2 reduction, where serpentinization provides continuous H2 and thermal energy. Here, we show that silica-supported bimetallic Co-Fe alloys, naturally occurring minerals around serpentinite, can convert CO2 and H2 O to key metabolic intermediates of the acetyl coenzyme A pathway such as formate (up to 72 mM), acetate, and pyruvate under mild hydrothermal vent conditions. Long-chain hydrocarbons up to C6 including propene are also detected, just as in the Lost City hydrothermal field. The effects of promoters on structural properties and catalytic functionalities of the Co-Fe alloy are systematically investigated by incorporating a series of alkali and alkaline earth metals including Na, Mg, K, and Ca. Alkali and alkaline earth metals resulted in higher formate concentrations when dissolved in water and increased reaction pH, while alkaline earth metals also favored the formation of insoluble hydroxides and carbonates similar to the constituent minerals of the chimneys at the Lost City hydrothermal fields.
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Affiliation(s)
- Youngdong Song
- Department of Heterogeneous Catalysis, Max-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz 1, 45470, Mülheim an der Ruhr, Germany
| | - Tuğçe Beyazay
- Department of Heterogeneous Catalysis, Max-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz 1, 45470, Mülheim an der Ruhr, Germany
| | - Harun Tüysüz
- Department of Heterogeneous Catalysis, Max-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz 1, 45470, Mülheim an der Ruhr, Germany
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6
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Tozzi A, Mazzeo M. The First Nucleic Acid Strands May Have Grown on Peptides via Primeval Reverse Translation. Acta Biotheor 2023; 71:23. [PMID: 37947915 DOI: 10.1007/s10441-023-09474-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2023] [Accepted: 10/25/2023] [Indexed: 11/12/2023]
Abstract
The central dogma of molecular biology dictates that, with only a few exceptions, information proceeds from DNA to protein through an RNA intermediate. Examining the enigmatic steps from prebiotic to biological chemistry, we take another road suggesting that primordial peptides acted as template for the self-assembly of the first nucleic acids polymers. Arguing in favour of a sort of archaic "reverse translation" from proteins to RNA, our basic premise is a Hadean Earth where key biomolecules such as amino acids, polypeptides, purines, pyrimidines, nucleosides and nucleotides were available under different prebiotically plausible conditions, including meteorites delivery, shallow ponds and hydrothermal vents scenarios. Supporting a protein-first scenario alternative to the RNA world hypothesis, we propose the primeval occurrence of short two-dimensional peptides termed "selective amino acid- and nucleotide-matching oligopeptides" (henceforward SANMAOs) that noncovalently bind at the same time the polymerized amino acids and the single nucleotides dispersed in the prebiotic milieu. In this theoretical paper, we describe the chemical features of this hypothetical oligopeptide, its biological plausibility and its virtues from an evolutionary perspective. We provide a theoretical example of SANMAO's selective pairing between amino acids and nucleosides, simulating a poly-Glycine peptide that acts as a template to build a purinic chain corresponding to the glycine's extant triplet codon GGG. Further, we discuss how SANMAO might have endorsed the formation of low-fidelity RNA's polymerized strains, well before the appearance of the accurate genetic material's transmission ensured by the current translation apparatus.
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Affiliation(s)
- Arturo Tozzi
- Center for Nonlinear Science, Department of Physics, University of North Texas, 1155 Union Circle, #311427, Denton, TX, 76203-5017, USA.
| | - Marco Mazzeo
- Erredibi Srl, Via Pazzigno 117, 80146, Naples, Italy
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7
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Schwander L, Brabender M, Mrnjavac N, Wimmer JLE, Preiner M, Martin WF. Serpentinization as the source of energy, electrons, organics, catalysts, nutrients and pH gradients for the origin of LUCA and life. Front Microbiol 2023; 14:1257597. [PMID: 37854333 PMCID: PMC10581274 DOI: 10.3389/fmicb.2023.1257597] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2023] [Accepted: 09/04/2023] [Indexed: 10/20/2023] Open
Abstract
Serpentinization in hydrothermal vents is central to some autotrophic theories for the origin of life because it generates compartments, reductants, catalysts and gradients. During the process of serpentinization, water circulates through hydrothermal systems in the crust where it oxidizes Fe (II) in ultramafic minerals to generate Fe (III) minerals and H2. Molecular hydrogen can, in turn, serve as a freely diffusible source of electrons for the reduction of CO2 to organic compounds, provided that suitable catalysts are present. Using catalysts that are naturally synthesized in hydrothermal vents during serpentinization H2 reduces CO2 to formate, acetate, pyruvate, and methane. These compounds represent the backbone of microbial carbon and energy metabolism in acetogens and methanogens, strictly anaerobic chemolithoautotrophs that use the acetyl-CoA pathway of CO2 fixation and that inhabit serpentinizing environments today. Serpentinization generates reduced carbon, nitrogen and - as newer findings suggest - reduced phosphorous compounds that were likely conducive to the origins process. In addition, it gives rise to inorganic microcompartments and proton gradients of the right polarity and of sufficient magnitude to support chemiosmotic ATP synthesis by the rotor-stator ATP synthase. This would help to explain why the principle of chemiosmotic energy harnessing is more conserved (older) than the machinery to generate ion gradients via pumping coupled to exergonic chemical reactions, which in the case of acetogens and methanogens involve H2-dependent CO2 reduction. Serpentinizing systems exist in terrestrial and deep ocean environments. On the early Earth they were probably more abundant than today. There is evidence that serpentinization once occurred on Mars and is likely still occurring on Saturn's icy moon Enceladus, providing a perspective on serpentinization as a source of reductants, catalysts and chemical disequilibrium for life on other worlds.
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Affiliation(s)
- Loraine Schwander
- Institute of Molecular Evolution, Biology Department, Math. -Nat. Faculty, Heinrich-Heine-Universität, Düsseldorf, Germany
| | - Max Brabender
- Institute of Molecular Evolution, Biology Department, Math. -Nat. Faculty, Heinrich-Heine-Universität, Düsseldorf, Germany
| | - Natalia Mrnjavac
- Institute of Molecular Evolution, Biology Department, Math. -Nat. Faculty, Heinrich-Heine-Universität, Düsseldorf, Germany
| | - Jessica L. E. Wimmer
- Institute of Molecular Evolution, Biology Department, Math. -Nat. Faculty, Heinrich-Heine-Universität, Düsseldorf, Germany
| | - Martina Preiner
- Microcosm Earth Center, Max Planck Institute for Terrestrial Microbiology and Philipps-Universität, Marburg, Germany
| | - William F. Martin
- Institute of Molecular Evolution, Biology Department, Math. -Nat. Faculty, Heinrich-Heine-Universität, Düsseldorf, Germany
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8
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He Y, Pan J, Huang D, Sanford RA, Peng S, Wei N, Sun W, Shi L, Jiang Z, Jiang Y, Hu Y, Li S, Li Y, Li M, Dong Y. Distinct microbial structure and metabolic potential shaped by significant environmental gradient impacted by ferrous slag weathering. ENVIRONMENT INTERNATIONAL 2023; 178:108067. [PMID: 37393724 DOI: 10.1016/j.envint.2023.108067] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/03/2023] [Revised: 06/23/2023] [Accepted: 06/25/2023] [Indexed: 07/04/2023]
Abstract
Alkaline ferrous slags pose global environmental issues and long-term risks to ambient environments. To explore the under-investigated microbial structure and biogeochemistry in such unique ecosystems, combined geochemical, microbial, ecological and metagenomic analyses were performed in the areas adjacent to a ferrous slag disposal plant in Sichuan, China. Different levels of exposure to ultrabasic slag leachate had resulted in a significant geochemical gradient of pH (8.0-12.4), electric potential (-126.9 to 437.9 mV), total organic carbon (TOC, 1.5-17.3 mg/L), and total nitrogen (TN, 0.17-1.01 mg/L). Distinct microbial communities were observed depending on their exposure to the strongly alkaline leachate. High pH and Ca2+ concentrations were associated with low microbial diversity and enrichment of bacterial classes Gamma-proteobacteria and Deinococci in the microbial communities exposed to the leachate. Combined metagenomic analyses of 4 leachate-unimpacted and 2-impacted microbial communities led to the assembly of one Serpentinomonas pangenome and 81 phylogenetically diversified metagenome assembled genomes (MAGs). The prevailing taxa in the leachate-impacted habitats (e.g., Serpentinomonas and Meiothermus spp.) were phylogenetically related to those in active serpentinizing ecosystems, suggesting the analogous processes between the man-made and natural systems. More importantly, they accounted for significant abundance of most functional genes associated with environmental adaptation and major element cycling. Their metabolic potential (e.g., cation/H+ antiporters, carbon fixation on lithospheric carbon source, and respiration coupling sulfur oxidization and oxygen or nitrate reduction) may support these taxa to survive and prosper in these unique geochemical niches. This study provides fundamental understandings of the adaptive strategies of microorganisms in response to the strong environmental perturbation by alkali tailings. It also contributes to a better comprehension of how to remediate environments affected by alkaline industrial material.
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Affiliation(s)
- Yu He
- School of Environmental Studies, China University of Geosciences, China
| | - Jie Pan
- Archaeal Biology Center, Institute for Advanced Studies, Shenzhen University, China; Shenzhen Key Laboratory of Marine Microbiome Engineering, Institute for Advanced Study, Shenzhen University, China
| | - Dongmei Huang
- School of Environmental Studies, China University of Geosciences, China; Yejin Geological Team of Hubei Geological Bureau, China
| | - Robert A Sanford
- Department of Earth Science & Environmental Change, University of Illinois Urbana-Champaign, Champaign, IL, United States
| | - Shuming Peng
- Institute of Ecological Environment, Chengdu University of Technology, China
| | - Na Wei
- Department of Civil and Environmental Engineering, University of Illinois Urbana-Champaign, Champaign, IL, United States
| | - Weimin Sun
- Guangdong Institute of Eco-environmental and Soil Science, Guangdong, China
| | - Liang Shi
- School of Environmental Studies, China University of Geosciences, China; State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, China; State Environmental Protection Key Laboratory of Source Apportionment and Control of Aquatic Pollution, Ministry of Ecology and Environment, China
| | - Zhou Jiang
- School of Environmental Studies, China University of Geosciences, China
| | - Yongguang Jiang
- School of Environmental Studies, China University of Geosciences, China
| | - Yidan Hu
- School of Environmental Studies, China University of Geosciences, China
| | - Shuyi Li
- School of Environmental Studies, China University of Geosciences, China
| | - Yongzhe Li
- School of Environmental Studies, China University of Geosciences, China
| | - Meng Li
- Archaeal Biology Center, Institute for Advanced Studies, Shenzhen University, China; Shenzhen Key Laboratory of Marine Microbiome Engineering, Institute for Advanced Study, Shenzhen University, China.
| | - Yiran Dong
- School of Environmental Studies, China University of Geosciences, China; State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, China; State Environmental Protection Key Laboratory of Source Apportionment and Control of Aquatic Pollution, Ministry of Ecology and Environment, China; Hubei Key Laboratory of Yangtze Catchment Environmental Aquatic Science, China; Hubei Key Laboratory of Wetland Evolution and Ecology Restoration, China.
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9
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Omran A, Gonzalez A, Menor-Salvan C, Gaylor M, Wang J, Leszczynski J, Feng T. Serpentinization-Associated Mineral Catalysis of the Protometabolic Formose System. Life (Basel) 2023; 13:1297. [PMID: 37374080 DOI: 10.3390/life13061297] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2023] [Revised: 05/21/2023] [Accepted: 05/29/2023] [Indexed: 06/29/2023] Open
Abstract
The formose reaction is a plausible prebiotic chemistry, famed for its production of sugars. In this work, we demonstrate that the Cannizzaro process is the dominant process in the formose reaction under many different conditions, thus necessitating a catalyst for the formose reaction under various environmental circumstances. The investigated formose reactions produce primarily organic acids associated with metabolism, a protometabolic system, and yield very little sugar left over. This is due to many of the acids forming from the degradation and Cannizaro reactions of many of the sugars produced during the formose reaction. We also show the heterogeneous Lewis-acid-based catalysis of the formose reaction by mineral systems associated with serpentinization. The minerals that showed catalytic activity include olivine, serpentinite, and calcium, and magnesium minerals including dolomite, calcite, and our Ca/Mg-chemical gardens. In addition, computational studies were performed for the first step of the formose reaction to investigate the reaction of formaldehyde, to either form methanol and formic acid under a Cannizzaro reaction or to react to form glycolaldehyde. Here, we postulate that serpentinization is therefore the startup process necessary to kick off a simple proto metabolic system-the formose protometabolic system.
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Affiliation(s)
- Arthur Omran
- Department of Chemistry, University of North Florida, Jacksonville, FL 32224, USA
- Department of Geosciences, University of South Florida, Tampa, FL 33620, USA
| | - Asbell Gonzalez
- Department of Chemistry, University of North Florida, Jacksonville, FL 32224, USA
| | - Cesar Menor-Salvan
- Departmento de Biologia de Sistemas, Universidad de Alcala, 28805 Alcala de Henares, Spain
| | - Michael Gaylor
- Analytical Sciences, Small Molecules Technologies, Bayer U.S., Saint Louis, MO 63167, USA
| | - Jing Wang
- Department of Chemistry, Physics and Atmospheric Sciences, Jackson State University, Jackson, MS 39217, USA
| | - Jerzy Leszczynski
- Department of Chemistry, Physics and Atmospheric Sciences, Jackson State University, Jackson, MS 39217, USA
| | - Tian Feng
- Department of Geosciences, University of South Florida, Tampa, FL 33620, USA
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10
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Mullis MM, Selwyn JD, Kevorkian R, Tague ED, Castro HF, Campagna SR, Lloyd KG, Reese BK. Microbial survival mechanisms within serpentinizing Mariana forearc sediments. FEMS Microbiol Ecol 2023; 99:6985003. [PMID: 36631299 DOI: 10.1093/femsec/fiad003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2022] [Revised: 12/07/2022] [Accepted: 01/10/2023] [Indexed: 01/13/2023] Open
Abstract
Marine deep subsurface sediment is often a microbial environment under energy-limited conditions. However, microbial life has been found to persist and even thrive in deep subsurface environments. The Mariana forearc represents an ideal location for determining how microbial life can withstand extreme conditions including pH 10-12.5 and depleted nutrients. The International Ocean Discovery Program Expedition 366 to the Mariana Convergent Margin sampled three serpentinizing seamounts located along the Mariana forearc chain with elevated concentrations of methane, hydrogen, and sulfide. Across all three seamount summits, the most abundant transcripts were for cellular maintenance such as cell wall and membrane repair, and the most abundant metabolic pathways were the Entner-Doudoroff pathway and tricarboxylic acid cycle. At flank samples, sulfur cycling involving taurine assimilation dominated the metatranscriptomes. The in situ activity of these pathways was supported by the detection of their metabolic intermediates. All samples had transcripts from all three domains of Bacteria, Archaea, and Eukarya, dominated by Burkholderiales, Deinococcales, and Pseudomonales, as well as the fungal group Opisthokonta. All samples contained transcripts for aerobic methane oxidation (pmoABC) and denitrification (nirKS). The Mariana forearc microbial communities show activity not only consistent with basic survival mechanisms, but also coupled metabolic reactions.
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Affiliation(s)
- Megan M Mullis
- Life Sciences Department, Texas A&M University - Corpus Christi, Corpus Christi, TX, United States.,Dauphin Island Sea Lab, Mobile, AL, United States
| | - Jason D Selwyn
- Life Sciences Department, Texas A&M University - Corpus Christi, Corpus Christi, TX, United States
| | - Richard Kevorkian
- Microbiology Department, University of Tennessee, Knoxville, TN, United States
| | - Eric D Tague
- Microbiology Department, University of Tennessee, Knoxville, TN, United States
| | - Hector F Castro
- Microbiology Department, University of Tennessee, Knoxville, TN, United States.,Chemistry Department, UTK Biological and Small Molecule Mass Spectrometry Core, Knoxville, TN, United States
| | - Shawn R Campagna
- Microbiology Department, University of Tennessee, Knoxville, TN, United States.,Chemistry Department, UTK Biological and Small Molecule Mass Spectrometry Core, Knoxville, TN, United States
| | - Karen G Lloyd
- Microbiology Department, University of Tennessee, Knoxville, TN, United States
| | - Brandi Kiel Reese
- Dauphin Island Sea Lab, Mobile, AL, United States.,Marine Sciences Department, University of South Alabama, Mobile, AL, United States
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11
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Abstract
Little is known of acetogens in contemporary serpentinizing systems, despite widely supported theories that serpentinite-hosted environments supported the first life on Earth via acetogenesis. To address this knowledge gap, genome-resolved metagenomics was applied to subsurface fracture water communities from an area of active serpentinization in the Samail Ophiolite, Sultanate of Oman. Two deeply branching putative bacterial acetogen types were identified in the communities belonging to the Acetothermia (hereafter, types I and II) that exhibited distinct distributions among waters with lower and higher water-rock reaction (i.e., serpentinization influence), respectively. Metabolic reconstructions revealed contrasting core metabolic pathways of type I and II Acetothermia, including in acetogenic pathway components (e.g., bacterial- vs. archaeal-like carbon monoxide dehydrogenases [CODH], respectively), hydrogen use to drive acetogenesis, and chemiosmotic potential generation via respiratory (type I) or canonical acetogen ferredoxin-based complexes (type II). Notably, type II Acetothermia metabolic pathways allow for use of serpentinization-derived substrates and implicate them as key primary producers in contemporary hyperalkaline serpentinite environments. Phylogenomic analyses indicate that 1) archaeal-like CODH of the type II genomes and those of other serpentinite-associated Bacteria derive from a deeply rooted horizontal transfer or origin among archaeal methanogens and 2) Acetothermia are among the earliest evolving bacterial lineages. The discovery of dominant and early-branching acetogens in subsurface waters of the largest near-surface serpentinite formation provides insight into the physiological traits that likely facilitated rock-supported life to flourish on a primitive Earth and possibly on other rocky planets undergoing serpentinization.
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12
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He C, Luo Y, Doddipatla S, Yang Z, Millar TJ, Sun R, Kaiser RI. Gas-phase formation of silicon monoxide via non-adiabatic reaction dynamics and its role as a building block of interstellar silicates. Phys Chem Chem Phys 2022; 24:19761-19772. [PMID: 35971984 DOI: 10.1039/d2cp02188a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Silicon monoxide (SiO) is classified as a key precursor and fundamental molecular building block to interstellar silicate nanoparticles, which play an essential role in the synthesis of molecular building blocks connected to the Origins of Life. In the cold interstellar medium, silicon monoxide is of critical importance in initiating a series of elementary chemical reactions leading to larger silicon oxides and eventually to silicates. To date, the fundamental formation mechanisms and chemical dynamics leading to gas phase silicon monoxide have remained largely elusive. Here, through a concerted effort between crossed molecular beam experiments and electronic structure calculations, it is revealed that instead of forming highly-stable silicon dioxide (SiO2), silicon monoxide can be formed via a barrierless, exoergic, single-collision event between ground state molecular oxygen and atomic silicon involving non-adiabatic reaction dynamics through various intersystem crossings. Our research affords persuasive evidence for a likely source of highly rovibrationally excited silicon monoxide in cold molecular clouds thus initiating the complex chain of exoergic reactions leading ultimately to a population of silicates at low temperatures in our Galaxy.
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Affiliation(s)
- Chao He
- Department of Chemistry, University of Hawai'i at Mānoa, Honolulu, HI 96822, USA.
| | - Yuheng Luo
- Department of Chemistry, University of Hawai'i at Mānoa, Honolulu, HI 96822, USA.
| | - Srinivas Doddipatla
- Department of Chemistry, University of Hawai'i at Mānoa, Honolulu, HI 96822, USA.
| | - Zhenghai Yang
- Department of Chemistry, University of Hawai'i at Mānoa, Honolulu, HI 96822, USA.
| | - Tom J Millar
- School of Mathematics and Physics, Queen's University Belfast, University Road, Belfast, BT7 1NN, UK
| | - Rui Sun
- Department of Chemistry, University of Hawai'i at Mānoa, Honolulu, HI 96822, USA.
| | - Ralf I Kaiser
- Department of Chemistry, University of Hawai'i at Mānoa, Honolulu, HI 96822, USA.
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13
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Todd ZR. Sources of Nitrogen-, Sulfur-, and Phosphorus-Containing Feedstocks for Prebiotic Chemistry in the Planetary Environment. Life (Basel) 2022; 12:1268. [PMID: 36013447 PMCID: PMC9410288 DOI: 10.3390/life12081268] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2022] [Revised: 08/13/2022] [Accepted: 08/17/2022] [Indexed: 11/21/2022] Open
Abstract
Biochemistry on Earth makes use of the key elements carbon, hydrogen, oxygen, nitrogen, phosphorus, and sulfur (or CHONPS). Chemically accessible molecules containing these key elements would presumably have been necessary for prebiotic chemistry and the origins of life on Earth. For example, feedstock molecules including fixed nitrogen (e.g., ammonia, nitrite, nitrate), accessible forms of phosphorus (e.g., phosphate, phosphite, etc.), and sources of sulfur (e.g., sulfide, sulfite) may have been necessary for the origins of life, given the biochemistry seen in Earth life today. This review describes potential sources of nitrogen-, sulfur-, and phosphorus-containing molecules in the context of planetary environments. For the early Earth, such considerations may be able to aid in the understanding of our own origins. Additionally, as we learn more about potential environments on other planets (for example, with upcoming next-generation telescope observations or new missions to explore other bodies in our Solar System), evaluating potential sources for elements necessary for life (as we know it) can help constrain the potential habitability of these worlds.
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Affiliation(s)
- Zoe R Todd
- Department of Earth and Space Sciences, University of Washington, Seattle, WA 98195, USA
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14
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Formation of Comets. UNIVERSE 2022. [DOI: 10.3390/universe8070381] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/04/2022]
Abstract
Questions regarding how primordial or pristine the comets of the solar system are have been an ongoing controversy. In this review, we describe comets’ physical evolution from dust and ice grains in the solar nebula to the contemporary small bodies in the outer solar system. This includes the phases of dust agglomeration, the formation of planetesimals, their thermal evolution and the outcomes of collisional processes. We use empirical evidence about comets, in particular from the Rosetta Mission to comet 67P/Churyumov–Gerasimenko, to draw conclusions about the possible thermal and collisional evolution of comets.
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15
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de Mendonça Filho FF, Romero Rodriguez C, Schlangen E, Çopuroğlu O. Plutonic Rocks as Protection Layers to Concrete Exposed to Ultra-High Temperature. MATERIALS 2022; 15:ma15103490. [PMID: 35629520 PMCID: PMC9147395 DOI: 10.3390/ma15103490] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/15/2022] [Revised: 05/09/2022] [Accepted: 05/10/2022] [Indexed: 02/04/2023]
Abstract
Concrete structures perform poorly when withstanding thermal shock events, usually requiring repair or replacement after one single instance. In certain industries (such as petrol, metallurgic and ceramics), these events are not only likely but frequent, which represents a considerable financial burden. One option to solve this issue would be to decrease the heating rate imposed onto the concrete material through the use of a protective surface layer. In this work, the suitability of dunite and microgabbro as protective materials is explored through X-ray diffraction, thermal dilation, optical microscopy, X-ray microtomography, thermo-gravimetric analysis and a compressive test. Further, the thermal dilation was used as an input to simulate a composite concrete-rock wall and the respective stresses caused by a thermal shock event. The dehydration of chrysotile in dunite and the decomposition of analcime, chamosite and pumpellyite in microgabbro were both favourable for the performance of the stones in the desired application. The thermal stability and deformation were found in the range of what can be applied directly on concrete; however, it was clear that pre-heating treatment results in a far more durable system in a cyclic thermal load situation.
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16
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Abstract
Priorities for the exploration of Mars involve the identification and observation of biosignatures that indicate the existence of life on the planet. The atmosphere and composition of the sediments on Mars suggest suitability for anaerobic chemolithotrophic metabolism. Carbonates are often considered as morphological biosignatures, such as stromatolites, but have not been considered as potential electron acceptors. Within the present study, hydrogenotrophic methanogen enrichments were generated from sediments that had received significant quantities of lime from industrial processes (lime kiln/steel production). These enrichments were then supplemented with calcium carbonate powder or marble chips as a sole source of carbon. These microcosms saw a release of inorganic carbon into the liquid phase, which was subsequently removed, resulting in the generation of methane, with 0.37 ± 0.09 mmoles of methane observed in the steel sediment enrichments supplemented with calcium carbonate powder. The steel sediment microcosms and lime sediments with carbonate powder enrichments were dominated by Methanobacterium sp., whilst the lime/marble enrichments were more diverse, containing varying proportions of Methanomassiliicoccus, Methanoculleus and Methanosarcina sp. In all microcosm experiments, acetic acid was detected in the liquid phase. Our results indicate that chemolithotrophic methanogenesis should be considered when determining biosignatures for life on Mars.
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17
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Farina V, Simula MD, Taras A, Cappai L, Sougrati MT, Mulas G, Garroni S, Enzo S, Stievano L. Unveiling redox mechanism at the iron centers in the mechanochemically activated conversion of CO 2 in the presence of olivine. JOURNAL OF MATERIALS SCIENCE 2022; 57:10017-10027. [PMID: 35221374 PMCID: PMC8863097 DOI: 10.1007/s10853-022-06962-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/21/2021] [Accepted: 01/28/2022] [Indexed: 06/14/2023]
Abstract
UNLABELLED The transformation of olivine during the conversion of CO2 to light hydrocarbons activated by mechanochemical treatments at different impact frequencies was studied by a combination of several complementary characterization methods including X-ray diffraction, Raman and 57Fe Mössbauer spectroscopy. Several olivine samples were studied as a function of the milling time, indicating the gradual transformation of FeII-containing olivine into new FeIII-containing weathering products including iron oxides, magnesium iron carbonates and silicates. The results presented here complement those of a previous study on the weathering process of olivine promoted by mechanochemical activation, by demonstrating the role of the redox activity of the iron species during the activation process. These additional spectroscopic results allow us to thoroughly understand the complex weathering mechanism and to correlate it with the efficiency of the CO2 conversion and storage properties of mechanochemically activated olivine. SUPPLEMENTARY INFORMATION The online version contains supplementary material available at 10.1007/s10853-022-06962-x.
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Affiliation(s)
- Valeria Farina
- Department of Chemistry and Pharmacy, Università Degli Studi Di Sassari and INSTM, Sassari, Italy
| | - Maria Domenica Simula
- Department of Chemistry and Pharmacy, Università Degli Studi Di Sassari and INSTM, Sassari, Italy
| | - Alessandro Taras
- Department of Chemistry and Pharmacy, Università Degli Studi Di Sassari and INSTM, Sassari, Italy
| | - Luca Cappai
- Department of Chemistry and Pharmacy, Università Degli Studi Di Sassari and INSTM, Sassari, Italy
| | | | - Gabriele Mulas
- Department of Chemistry and Pharmacy, Università Degli Studi Di Sassari and INSTM, Sassari, Italy
| | - Sebastiano Garroni
- Department of Chemistry and Pharmacy, Università Degli Studi Di Sassari and INSTM, Sassari, Italy
| | - Stefano Enzo
- Department of Chemistry and Pharmacy, Università Degli Studi Di Sassari and INSTM, Sassari, Italy
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18
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Westmeijer G, Mehrshad M, Turner S, Alakangas L, Sachpazidou V, Bunse C, Pinhassi J, Ketzer M, Åström M, Bertilsson S, Dopson M. Connectivity of Fennoscandian Shield terrestrial deep biosphere microbiomes with surface communities. Commun Biol 2022; 5:37. [PMID: 35017653 PMCID: PMC8752596 DOI: 10.1038/s42003-021-02980-8] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2021] [Accepted: 12/15/2021] [Indexed: 12/20/2022] Open
Abstract
The deep biosphere is an energy constrained ecosystem yet fosters diverse microbial communities that are key in biogeochemical cycling. Whether microbial communities in deep biosphere groundwaters are shaped by infiltration of allochthonous surface microorganisms or the evolution of autochthonous species remains unresolved. In this study, 16S rRNA gene amplicon analyses showed that few groups of surface microbes infiltrated deep biosphere groundwaters at the Äspö Hard Rock Laboratory, Sweden, but that such populations constituted up to 49% of the microbial abundance. The dominant persisting phyla included Patescibacteria, Proteobacteria, and Epsilonbacteraeota. Despite the hydrological connection of the Baltic Sea with the studied groundwaters, infiltrating microbes predominantly originated from deep soil groundwater. Most deep biosphere groundwater populations lacked surface representatives, suggesting that they have evolved from ancient autochthonous populations. We propose that deep biosphere groundwater communities in the Fennoscandian Shield consist of selected infiltrated and indigenous populations adapted to the prevailing conditions. Westmeijer et al. employ high-throughput sequencing to investigate the connection between deep biosphere groundwaters and surface microbial communities. They suggest that the microbial communities of deep biosphere groundwaters in the Fennoscandian Shield are mostly comprised of autochthonous species, rather than migratory surface representatives.
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Affiliation(s)
- George Westmeijer
- Centre for Ecology and Evolution in Microbial Model Systems (EEMiS), Linnaeus University, Stuvaregatan 4, 39 231, Kalmar, Sweden.
| | - Maliheh Mehrshad
- Department of Aquatic Sciences and Assessment, Swedish University of Agricultural Sciences, P.O. Box 7050, 75 007, Uppsala, Sweden
| | - Stephanie Turner
- Centre for Ecology and Evolution in Microbial Model Systems (EEMiS), Linnaeus University, Stuvaregatan 4, 39 231, Kalmar, Sweden
| | - Linda Alakangas
- Swedish Nuclear Fuel and Waste Management Co (SKB), 57 229, Oskarshamn, Sweden
| | - Varvara Sachpazidou
- Department of Biology and Environmental Sciences, Linnaeus University, 39 231, Kalmar, Sweden
| | - Carina Bunse
- Centre for Ecology and Evolution in Microbial Model Systems (EEMiS), Linnaeus University, Stuvaregatan 4, 39 231, Kalmar, Sweden.,Helmholtz-Institute for Functional Marine Biodiversity at the University of Oldenburg (HIFMB), 26129, Oldenburg, Germany
| | - Jarone Pinhassi
- Centre for Ecology and Evolution in Microbial Model Systems (EEMiS), Linnaeus University, Stuvaregatan 4, 39 231, Kalmar, Sweden
| | - Marcelo Ketzer
- Department of Biology and Environmental Sciences, Linnaeus University, 39 231, Kalmar, Sweden
| | - Mats Åström
- Department of Biology and Environmental Sciences, Linnaeus University, 39 231, Kalmar, Sweden
| | - Stefan Bertilsson
- Department of Aquatic Sciences and Assessment, Swedish University of Agricultural Sciences, P.O. Box 7050, 75 007, Uppsala, Sweden
| | - Mark Dopson
- Centre for Ecology and Evolution in Microbial Model Systems (EEMiS), Linnaeus University, Stuvaregatan 4, 39 231, Kalmar, Sweden
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19
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Omran A, Oze C, Jackson B, Mehta C, Barge LM, Bada J, Pasek MA. Phosphine Generation Pathways on Rocky Planets. ASTROBIOLOGY 2021; 21:1264-1276. [PMID: 34551269 DOI: 10.1089/ast.2021.0034] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
The possibility of life in the venusian clouds was proposed in the 1960s, and recently this hypothesis has been revived with the potential detection of phosphine (PH3) in Venus' atmosphere. These observations may have detected ∼5-20 ppb phosphine on Venus (Greaves et al., 2020), which raises questions about venusian atmospheric/geochemical processes and suggests that this phosphine could possibly be generated by biological processes. In such a claim, it is essential to understand the abiotic phosphorus chemistry that may occur under Venus-relevant conditions, particularly those processes that may result in phosphine generation. Here, we discuss two related abiotic routes for phosphine generation within the atmosphere of Venus. Based on our assessment, corrosion of large impactors as they ablate near Venus' cloud layer, and the presence of reduced phosphorus compounds in the subcloud layer could result in production of phosphine and may explain the phosphine detected in Venus' atmosphere or on other rocky planets. We end on a cautionary note: although there may be life in the clouds of Venus, the detection of a simple, single gas, phosphine, is likely not a decisive indicator.
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Affiliation(s)
- Arthur Omran
- Department of Geosciences, University of South Florida, Tampa, Florida, USA
| | - Christopher Oze
- Geology Department, Occidental College, Los Angeles, California, USA
| | - Brian Jackson
- Department of Physics, Boise State University, Boise, Idaho, USA
| | - Chris Mehta
- Department of Geosciences, University of South Florida, Tampa, Florida, USA
| | - Laura M Barge
- NASA Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California, USA
| | - Jeffrey Bada
- Scripps Institution of Oceanography Department, University of California at San Diego, La Jolla, California, USA
| | - Matthew A Pasek
- Department of Geosciences, University of South Florida, Tampa, Florida, USA
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20
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Veneranda M, Lopez-Reyes G, Pascual Sanchez E, Krzesińska AM, Manrique-Martinez JA, Sanz-Arranz A, Lantz C, Lalla E, Moral A, Medina J, Poulet F, Dypvik H, Werner SC, Vago JL, Rull F. ExoMars Raman Laser Spectrometer: A Tool to Semiquantify the Serpentinization Degree of Olivine-Rich Rocks on Mars. ASTROBIOLOGY 2021; 21:307-322. [PMID: 33252242 DOI: 10.1089/ast.2020.2265] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
We evaluated the effectiveness of the ExoMars Raman laser spectrometer (RLS) to determine the degree of serpentinization of olivine-rich units on Mars. We selected terrestrial analogs of martian ultramafic rocks from the Leka Ophiolite Complex (LOC) and analyzed them with both laboratory and flight-like analytical instruments. We first studied the mineralogical composition of the samples (mostly olivine and serpentine) with state-of-the-art diffractometric (X-ray diffractometry [XRD]) and spectroscopic (Raman, near-infrared spectroscopy [NIR]) laboratory systems. We compared these results with those obtained using our RLS ExoMars Simulator. Our work shows that the RLS ExoMars Simulator successfully identified all major phases. Moreover, when emulating the automatic operating mode of the flight instrument, the RLS ExoMars Simulator also detected several minor compounds (pyroxene and brucite), some of which were not observed by NIR and XRD (e.g., calcite). Thereafter, we produced RLS-dedicated calibration curves (R2 between 0.9993 and 0.9995 with an uncertainty between ±3.0% and ±5.2% with a confidence interval of 95%) to estimate the relative content of olivine and serpentine in the samples. Our results show that RLS can be very effective in identifying serpentine, a scientific target of primary importance for the potential detection of biosignatures on Mars-the main objective of the ExoMars rover mission.
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Affiliation(s)
- Marco Veneranda
- Department of Condensed Matter Physics, Crystallography and Mineralogy, University of Valladolid, Valladolid, Spain
| | - Guillermo Lopez-Reyes
- Department of Condensed Matter Physics, Crystallography and Mineralogy, University of Valladolid, Valladolid, Spain
| | - Elena Pascual Sanchez
- Department of Condensed Matter Physics, Crystallography and Mineralogy, University of Valladolid, Valladolid, Spain
| | - Agata M Krzesińska
- Department of Geosciences, Centre for Earth Evolution and Dynamics, University of Oslo, Oslo, Norway
| | | | - Aurelio Sanz-Arranz
- Department of Condensed Matter Physics, Crystallography and Mineralogy, University of Valladolid, Valladolid, Spain
| | - Cateline Lantz
- Institut d'Astrophysique Spatiale, CNRS/Université Paris-Sud, Orsay, France
| | - Emmanuel Lalla
- Department of Earth and Space Science and Engineering, York University, Toronto, Canada
| | - Andoni Moral
- Department of Space Programs, Instituto Nacional de Técnica Aeroespacial (INTA), Madrid, Spain
| | - Jesús Medina
- Department of Condensed Matter Physics, Crystallography and Mineralogy, University of Valladolid, Valladolid, Spain
| | - Francois Poulet
- Institut d'Astrophysique Spatiale, CNRS/Université Paris-Sud, Orsay, France
| | - Henning Dypvik
- Department of Geosciences, Centre for Earth Evolution and Dynamics, University of Oslo, Oslo, Norway
| | - Stephanie C Werner
- Department of Geosciences, Centre for Earth Evolution and Dynamics, University of Oslo, Oslo, Norway
| | | | - Fernando Rull
- Department of Condensed Matter Physics, Crystallography and Mineralogy, University of Valladolid, Valladolid, Spain
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21
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Bizzarri BM, Saladino R, Delfino I, García-Ruiz JM, Di Mauro E. Prebiotic Organic Chemistry of Formamide and the Origin of Life in Planetary Conditions: What We Know and What Is the Future. Int J Mol Sci 2021; 22:ijms22020917. [PMID: 33477625 PMCID: PMC7831497 DOI: 10.3390/ijms22020917] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2020] [Revised: 01/14/2021] [Accepted: 01/17/2021] [Indexed: 11/18/2022] Open
Abstract
The goal of prebiotic chemistry is the depiction of molecular evolution events preceding the emergence of life on Earth or elsewhere in the cosmos. Plausible experimental models require geochemical scenarios and robust chemistry. Today we know that the chemical and physical conditions for life to flourish on Earth were at work much earlier than thought, i.e., earlier than 4.4 billion years ago. In recent years, a geochemical model for the first five hundred million years of the history of our planet has been devised that would work as a cradle for life. Serpentinization processes in the Hadean eon affording self-assembled structures and vesicles provides the link between the catalytic properties of the inorganic environment and the impressive chemical potential of formamide to produce complete panels of organic molecules relevant in pre-genetic and pre-metabolic processes. Based on an interdisciplinary approach, we propose basic transformations connecting geochemistry to the chemistry of formamide, and we hint at the possible extension of this perspective to other worlds.
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Affiliation(s)
- Bruno Mattia Bizzarri
- Ecological and Biological Sciences Department (DEB), University of Tuscia, Via S. Camillo de Lellis snc, 01100 Viterbo, Italy; (B.M.B.); (I.D.); (E.D.M.)
| | - Raffaele Saladino
- Ecological and Biological Sciences Department (DEB), University of Tuscia, Via S. Camillo de Lellis snc, 01100 Viterbo, Italy; (B.M.B.); (I.D.); (E.D.M.)
- Correspondence: (R.S.); (J.M.G.-R.)
| | - Ines Delfino
- Ecological and Biological Sciences Department (DEB), University of Tuscia, Via S. Camillo de Lellis snc, 01100 Viterbo, Italy; (B.M.B.); (I.D.); (E.D.M.)
| | - Juan Manuel García-Ruiz
- Laboratorio de Estudios Cristalográficos, Instituto Andaluz de Ciencias de la Tierra, Consejo Superior de Investigaciones Científicas–Universidad de Granada, Avenida de las Palmeras 4, Armilla, 18100 Granada, Spain
- Correspondence: (R.S.); (J.M.G.-R.)
| | - Ernesto Di Mauro
- Ecological and Biological Sciences Department (DEB), University of Tuscia, Via S. Camillo de Lellis snc, 01100 Viterbo, Italy; (B.M.B.); (I.D.); (E.D.M.)
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22
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García-Ruiz JM, van Zuilen MA, Bach W. The convergence of minerals and life: Reply to comments on "Mineral self-organization on a lifeless planet". Phys Life Rev 2020; 34-35:99-104. [PMID: 32868160 DOI: 10.1016/j.plrev.2020.07.004] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2020] [Accepted: 07/21/2020] [Indexed: 12/14/2022]
Affiliation(s)
- Juan Manuel García-Ruiz
- Laboratorio de Estudios Cristalográficos, Instituto Andaluz de Ciencias de la Tierra, CSIC-Universidad de Granada, Av. de las Palmeras 4, Armilla (Granada), Spain.
| | - Mark A van Zuilen
- Equipe Géomicrobiologie, Université de Paris, Institut de Physique du Globe de Paris, CNRS, F-75005 Paris, France
| | - Wolfgang Bach
- Geoscience Department and MARUM, University of Bremen, Klagenfurter Str. 2, 28359 Bremen, Germany
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23
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Mohammadi E, Petera L, Saeidfirozeh H, Knížek A, Kubelík P, Dudžák R, Krůs M, Juha L, Civiš S, Coulon R, Malina O, Ugolotti J, Ranc V, Otyepka M, Šponer J, Ferus M, Šponer JE. Formic Acid, a Ubiquitous but Overlooked Component of the Early Earth Atmosphere. Chemistry 2020; 26:12075-12080. [PMID: 32293757 DOI: 10.1002/chem.202000323] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2020] [Revised: 04/11/2020] [Indexed: 01/19/2023]
Abstract
Terrestrial volcanism has been one of the dominant geological forces shaping our planet since its earliest existence. Its associated phenomena, like atmospheric lightning and hydrothermal activity, provide a rich energy reservoir for chemical syntheses. Based on our laboratory simulations, we propose that on the early Earth volcanic activity inevitably led to a remarkable production of formic acid through various independent reaction channels. Large-scale availability of atmospheric formic acid supports the idea of the high-temperature accumulation of formamide in this primordial environment.
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Affiliation(s)
- Elmira Mohammadi
- Regional Centre of Advanced Technologies and Materials, Palacký University Olomouc, Šlechtitelů 27, 78371, Olomouc, Czech Republic
| | - Lukáš Petera
- J. Heyrovský Institute of Physical Chemistry, Czech Academy of Sciences, Dolejškova 3, 18223, Prague 8, Czech Republic.,Faculty of Science, Charles University, Albertov 2030, 12843, Prague, Czech Republic
| | - Homa Saeidfirozeh
- J. Heyrovský Institute of Physical Chemistry, Czech Academy of Sciences, Dolejškova 3, 18223, Prague 8, Czech Republic
| | - Antonín Knížek
- J. Heyrovský Institute of Physical Chemistry, Czech Academy of Sciences, Dolejškova 3, 18223, Prague 8, Czech Republic.,Faculty of Science, Charles University, Albertov 2030, 12843, Prague, Czech Republic
| | - Petr Kubelík
- J. Heyrovský Institute of Physical Chemistry, Czech Academy of Sciences, Dolejškova 3, 18223, Prague 8, Czech Republic.,Institute of Physics, Czech Academy of Sciences, Na Slovance 1999/2, 18221, Prague 8, Czech Republic
| | - Roman Dudžák
- Institute of Physics, Czech Academy of Sciences, Na Slovance 1999/2, 18221, Prague 8, Czech Republic.,Institute of Plasma Physics, Czech Academy of Sciences, Za Slovankou 1782/3, 18200, Prague 8, Czech Republic
| | - Miroslav Krůs
- Institute of Plasma Physics, Czech Academy of Sciences, Za Slovankou 1782/3, 18200, Prague 8, Czech Republic
| | - Libor Juha
- Institute of Physics, Czech Academy of Sciences, Na Slovance 1999/2, 18221, Prague 8, Czech Republic.,Institute of Plasma Physics, Czech Academy of Sciences, Za Slovankou 1782/3, 18200, Prague 8, Czech Republic
| | - Svatopluk Civiš
- J. Heyrovský Institute of Physical Chemistry, Czech Academy of Sciences, Dolejškova 3, 18223, Prague 8, Czech Republic
| | - Rémi Coulon
- Regional Centre of Advanced Technologies and Materials, Palacký University Olomouc, Šlechtitelů 27, 78371, Olomouc, Czech Republic
| | - Ondřej Malina
- Regional Centre of Advanced Technologies and Materials, Palacký University Olomouc, Šlechtitelů 27, 78371, Olomouc, Czech Republic
| | - Juri Ugolotti
- Regional Centre of Advanced Technologies and Materials, Palacký University Olomouc, Šlechtitelů 27, 78371, Olomouc, Czech Republic
| | - Václav Ranc
- Regional Centre of Advanced Technologies and Materials, Palacký University Olomouc, Šlechtitelů 27, 78371, Olomouc, Czech Republic
| | - Michal Otyepka
- Regional Centre of Advanced Technologies and Materials, Palacký University Olomouc, Šlechtitelů 27, 78371, Olomouc, Czech Republic
| | - Jiří Šponer
- Regional Centre of Advanced Technologies and Materials, Palacký University Olomouc, Šlechtitelů 27, 78371, Olomouc, Czech Republic.,Institute of Biophysics of the Czech Academy of Sciences, Královopolská 135, 61265, Brno, Czech Republic
| | - Martin Ferus
- J. Heyrovský Institute of Physical Chemistry, Czech Academy of Sciences, Dolejškova 3, 18223, Prague 8, Czech Republic
| | - Judit E Šponer
- Regional Centre of Advanced Technologies and Materials, Palacký University Olomouc, Šlechtitelů 27, 78371, Olomouc, Czech Republic.,Institute of Biophysics of the Czech Academy of Sciences, Královopolská 135, 61265, Brno, Czech Republic
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24
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Newman SA, Lincoln SA, O'Reilly S, Liu X, Shock EL, Kelemen PB, Summons RE. Lipid Biomarker Record of the Serpentinite-Hosted Ecosystem of the Samail Ophiolite, Oman and Implications for the Search for Biosignatures on Mars. ASTROBIOLOGY 2020; 20:830-845. [PMID: 32648829 DOI: 10.1089/ast.2019.2066] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Serpentinization is a weathering process in which ultramafic rocks react with water, generating a range of products, including serpentine and other minerals, in addition to H2 and low-molecular-weight hydrocarbons that are capable of sustaining microbial life. Lipid biomarker analyses of serpentinite-hosted ecosystems hold promise as tools for investigating microbial activity in ancient Earth environments and other terrestrial planets such as Mars because lipids have the potential for longer term preservation relative to DNA, proteins, and other more labile organic molecules. Here, we report the first lipid biomarker record of microbial activity in the mantle section of the Samail Ophiolite, in the Sultanate of Oman, a site undergoing active serpentinization. We detected isoprenoidal (archaeal) and branched (bacterial) glycerol dialkyl glycerol tetraether (GDGT) lipids, including those with 0-3 cyclopentane moieties, and crenarchaeol, an isoprenoidal GDGT containing four cyclopentane and one cyclohexane moieties, as well as monoether lipids and fatty acids indicative of sulfate-reducing bacteria. Comparison of our geochemical data and 16S rRNA data from the Samail Ophiolite with those from other serpentinite-hosted sites identifies the existence of a common core serpentinization microbiome. In light of these findings, we also discuss the preservation potential of serpentinite lipid biomarker assemblages on Earth and Mars. Continuing investigations of the Samail Ophiolite and other terrestrial analogues will enhance our understanding of microbial habitability and diversity in serpentinite-hosted environments on Earth and elsewhere in the Solar System.
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Affiliation(s)
- Sharon A Newman
- Department of Earth, Atmospheric and Planetary Sciences, Massachusetts Institute of Technology, Cambridge, Massachusetts
- Division of Geological and Planetary Sciences, California Institute of Technology, Pasadena, California
| | - Sara A Lincoln
- Department of Earth, Atmospheric and Planetary Sciences, Massachusetts Institute of Technology, Cambridge, Massachusetts
- Department of Geosciences, The Pennsylvania State University, University Park, Pennsylvania
| | - Shane O'Reilly
- Department of Earth, Atmospheric and Planetary Sciences, Massachusetts Institute of Technology, Cambridge, Massachusetts
- School of Earth Sciences, University College Dublin, Belfield, Ireland
| | - Xiaolei Liu
- Department of Earth, Atmospheric and Planetary Sciences, Massachusetts Institute of Technology, Cambridge, Massachusetts
- School of Geology and Geophysics, University of Oklahoma, Norman, Oklahoma
| | - Everett L Shock
- School of Earth and Space Exploration, Arizona State University, Tempe, Arizona
- School of Molecular Sciences, Arizona State University, Tempe, Arizona
- Center for Fundamental and Applied Microbiomics, Arizona State University, Tempe, Arizona
| | - Peter B Kelemen
- Lamont-Doherty Earth Observatory, Columbia University, Palisades, New York
| | - Roger E Summons
- Department of Earth, Atmospheric and Planetary Sciences, Massachusetts Institute of Technology, Cambridge, Massachusetts
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Formic acid, the precursor of formamide, from serpentinization: Comment on the paper: "Mineral self-organization on a lifeless planet" by Juan Manuel García-Ruiz, Mark A. van Zuilen and Wolfgang Bach. Phys Life Rev 2020; 34-35:94-95. [PMID: 32586715 DOI: 10.1016/j.plrev.2020.06.002] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2020] [Accepted: 06/05/2020] [Indexed: 11/24/2022]
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do Nascimento Vieira A, Kleinermanns K, Martin WF, Preiner M. The ambivalent role of water at the origins of life. FEBS Lett 2020; 594:2717-2733. [PMID: 32416624 DOI: 10.1002/1873-3468.13815] [Citation(s) in RCA: 29] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2020] [Revised: 04/29/2020] [Accepted: 05/07/2020] [Indexed: 12/15/2022]
Abstract
Life as we know it would not exist without water. However, water molecules not only serve as a solvent and reactant but can also promote hydrolysis, which counteracts the formation of essential organic molecules. This conundrum constitutes one of the central issues in origin of life. Hydrolysis is an important part of energy metabolism for all living organisms but only because, inside cells, it is a controlled reaction. How could hydrolysis have been regulated under prebiotic settings? Lower water activities possibly provide an answer: geochemical sites with less free and more bound water can supply the necessary conditions for protometabolic reactions. Such conditions occur in serpentinising systems, hydrothermal sites that synthesise hydrogen gas via rock-water interactions. Here, we summarise the parallels between biotic and abiotic means of controlling hydrolysis in order to narrow the gap between biochemical and geochemical reactions and briefly outline how hydrolysis could even have played a constructive role at the origin of molecular self-organisation.
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Affiliation(s)
| | | | - William F Martin
- Institute for Molecular Evolution, University of Düsseldorf, Germany
| | - Martina Preiner
- Institute for Molecular Evolution, University of Düsseldorf, Germany
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27
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Selective prebiotic formation of RNA pyrimidine and DNA purine nucleosides. Nature 2020; 582:60-66. [PMID: 32494078 DOI: 10.1038/s41586-020-2330-9] [Citation(s) in RCA: 87] [Impact Index Per Article: 17.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2019] [Accepted: 04/16/2020] [Indexed: 11/08/2022]
Abstract
The nature of the first genetic polymer is the subject of major debate1. Although the 'RNA world' theory suggests that RNA was the first replicable information carrier of the prebiotic era-that is, prior to the dawn of life2,3-other evidence implies that life may have started with a heterogeneous nucleic acid genetic system that included both RNA and DNA4. Such a theory streamlines the eventual 'genetic takeover' of homogeneous DNA from RNA as the principal information-storage molecule, but requires a selective abiotic synthesis of both RNA and DNA building blocks in the same local primordial geochemical scenario. Here we demonstrate a high-yielding, completely stereo-, regio- and furanosyl-selective prebiotic synthesis of the purine deoxyribonucleosides: deoxyadenosine and deoxyinosine. Our synthesis uses key intermediates in the prebiotic synthesis of the canonical pyrimidine ribonucleosides (cytidine and uridine), and we show that, once generated, the pyrimidines persist throughout the synthesis of the purine deoxyribonucleosides, leading to a mixture of deoxyadenosine, deoxyinosine, cytidine and uridine. These results support the notion that purine deoxyribonucleosides and pyrimidine ribonucleosides may have coexisted before the emergence of life5.
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28
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Vago JL, Westall F. Similarities between terrestrial planets at the time life appeared on Earth: Comment on "Mineral self-organization on a lifeless planet" by J.M. García-Ruiz et al. Phys Life Rev 2020; 34-35:92-93. [PMID: 32467038 DOI: 10.1016/j.plrev.2020.05.003] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2020] [Accepted: 05/13/2020] [Indexed: 10/24/2022]
Affiliation(s)
- Jorge L Vago
- European Space Agency, ESTEC, Keplerlaan 1, Noordwijk, the Netherlands.
| | - Frances Westall
- CNRS-OSUC-Centre de Biophysique Moléculaire, Orléans, France
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29
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Genomic Evidence for Formate Metabolism by Chloroflexi as the Key to Unlocking Deep Carbon in Lost City Microbial Ecosystems. Appl Environ Microbiol 2020; 86:AEM.02583-19. [PMID: 32033949 PMCID: PMC7117926 DOI: 10.1128/aem.02583-19] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2019] [Accepted: 01/31/2020] [Indexed: 02/06/2023] Open
Abstract
Primitive forms of life may have originated around hydrothermal vents at the bottom of the ancient ocean. The Lost City hydrothermal vent field, fueled by just rock and water, provides an analog for not only primitive ecosystems but also potential extraterrestrial rock-powered ecosystems. The microscopic life covering the towering chimney structures at the Lost City has been previously documented, yet little is known about the carbon cycling in this ecosystem. These results provide a better understanding of how carbon from the deep subsurface can fuel rich microbial ecosystems on the seafloor. The Lost City hydrothermal field on the Mid-Atlantic Ridge supports dense microbial life on the lofty calcium carbonate chimney structures. The vent field is fueled by chemical reactions between the ultramafic rock under the chimneys and ambient seawater. These serpentinization reactions provide reducing power (as hydrogen gas) and organic compounds that can serve as microbial food; the most abundant of these are methane and formate. Previous studies have characterized the interior of the chimneys as a single-species biofilm inhabited by the Lost City Methanosarcinales, but they also indicated that this methanogen is unable to metabolize formate. The new metagenomic results presented here indicate that carbon cycling in these Lost City chimney biofilms could depend on the metabolism of formate by Chloroflexi populations. Additionally, we present evidence for metabolically diverse, formate-utilizing Sulfurovum populations and new genomic and phylogenetic insights into the unique Lost City Methanosarcinales. IMPORTANCE Primitive forms of life may have originated around hydrothermal vents at the bottom of the ancient ocean. The Lost City hydrothermal vent field, fueled by just rock and water, provides an analog for not only primitive ecosystems but also potential extraterrestrial rock-powered ecosystems. The microscopic life covering the towering chimney structures at the Lost City has been previously documented, yet little is known about the carbon cycling in this ecosystem. These results provide a better understanding of how carbon from the deep subsurface can fuel rich microbial ecosystems on the seafloor.
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Olsson-Francis K, Ramkissoon NK, Macey MC, Pearson VK, Schwenzer SP, Johnson DN. Simulating microbial processes in extraterrestrial, aqueous environments. J Microbiol Methods 2020; 172:105883. [PMID: 32119957 DOI: 10.1016/j.mimet.2020.105883] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2019] [Revised: 02/28/2020] [Accepted: 02/28/2020] [Indexed: 10/24/2022]
Abstract
Finding evidence of life elsewhere in the Solar System is dependent on understanding biotic processes that could occur within potentially habitable environments. Here, we describe a suite of high-pressure flow-through reactors that have been developed to investigate biotic and abiotic processes within simulated sub-surface martian and icy moon environments.
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Affiliation(s)
- K Olsson-Francis
- STEM Faculty, The Open University, Walton Hall, Milton Keynes MK7 6AA, UK.
| | - N K Ramkissoon
- STEM Faculty, The Open University, Walton Hall, Milton Keynes MK7 6AA, UK
| | - M C Macey
- STEM Faculty, The Open University, Walton Hall, Milton Keynes MK7 6AA, UK
| | - V K Pearson
- STEM Faculty, The Open University, Walton Hall, Milton Keynes MK7 6AA, UK
| | - S P Schwenzer
- STEM Faculty, The Open University, Walton Hall, Milton Keynes MK7 6AA, UK
| | - D N Johnson
- STEM Faculty, The Open University, Walton Hall, Milton Keynes MK7 6AA, UK
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31
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Merino N, Aronson HS, Bojanova DP, Feyhl-Buska J, Wong ML, Zhang S, Giovannelli D. Corrigendum: Living at the Extremes: Extremophiles and the Limits of Life in a Planetary Context. Front Microbiol 2019; 10:1785. [PMID: 31456760 PMCID: PMC6700686 DOI: 10.3389/fmicb.2019.01785] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2019] [Accepted: 07/18/2019] [Indexed: 11/27/2022] Open
Affiliation(s)
- Nancy Merino
- Department of Earth Sciences, University of Southern California, Los Angeles, CA, United States.,Earth-Life Science Institute, Tokyo Institute of Technology, Tokyo, Japan.,Biosciences and Biotechnology Division, Physical and Life Sciences Directorate, Lawrence Livermore National Lab, Livermore, CA, United States
| | - Heidi S Aronson
- Department of Biology, University of Southern California, Los Angeles, CA, United States
| | - Diana P Bojanova
- Department of Earth Sciences, University of Southern California, Los Angeles, CA, United States
| | - Jayme Feyhl-Buska
- Department of Earth Sciences, University of Southern California, Los Angeles, CA, United States
| | - Michael L Wong
- Department of Astronomy - Astrobiology Program, University of Washington, Seattle, WA, United States.,NASA Astrobiology Institute's Virtual Planetary Laboratory, University of Washington, Seattle, WA, United States
| | - Shu Zhang
- Section of Infection and Immunity, Herman Ostrow School of Dentistry of USC, University of Southern California, Los Angeles, CA, United States
| | - Donato Giovannelli
- Earth-Life Science Institute, Tokyo Institute of Technology, Tokyo, Japan.,Department of Biology, University of Naples "Federico II", Naples, Italy.,Department of Marine and Coastal Science, Rutgers, The State University of New Jersey, New Brunswick, NJ, United States.,Institute for Biological Resources and Marine Biotechnology, National Research Council of Italy, Ancona, Italy
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32
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Merino N, Aronson HS, Bojanova DP, Feyhl-Buska J, Wong ML, Zhang S, Giovannelli D. Living at the Extremes: Extremophiles and the Limits of Life in a Planetary Context. Front Microbiol 2019; 10:780. [PMID: 31037068 PMCID: PMC6476344 DOI: 10.3389/fmicb.2019.00780] [Citation(s) in RCA: 253] [Impact Index Per Article: 42.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2019] [Accepted: 03/27/2019] [Indexed: 01/21/2023] Open
Abstract
Prokaryotic life has dominated most of the evolutionary history of our planet, evolving to occupy virtually all available environmental niches. Extremophiles, especially those thriving under multiple extremes, represent a key area of research for multiple disciplines, spanning from the study of adaptations to harsh conditions, to the biogeochemical cycling of elements. Extremophile research also has implications for origin of life studies and the search for life on other planetary and celestial bodies. In this article, we will review the current state of knowledge for the biospace in which life operates on Earth and will discuss it in a planetary context, highlighting knowledge gaps and areas of opportunity.
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Affiliation(s)
- Nancy Merino
- Department of Earth Sciences, University of Southern California, Los Angeles, CA, United States.,Earth-Life Science Institute, Tokyo Institute of Technology, Tokyo, Japan.,Biosciences and Biotechnology Division, Physical and Life Sciences Directorate, Lawrence Livermore National Lab, Livermore, CA, United States
| | - Heidi S Aronson
- Department of Biology, University of Southern California, Los Angeles, CA, United States
| | - Diana P Bojanova
- Department of Earth Sciences, University of Southern California, Los Angeles, CA, United States
| | - Jayme Feyhl-Buska
- Department of Earth Sciences, University of Southern California, Los Angeles, CA, United States
| | - Michael L Wong
- Department of Astronomy - Astrobiology Program, University of Washington, Seattle, WA, United States.,NASA Astrobiology Institute's Virtual Planetary Laboratory, University of Washington, Seattle, WA, United States
| | - Shu Zhang
- Section of Infection and Immunity, Herman Ostrow School of Dentistry of USC, University of Southern California, Los Angeles, CA, United States
| | - Donato Giovannelli
- Earth-Life Science Institute, Tokyo Institute of Technology, Tokyo, Japan.,Department of Biology, University of Naples "Federico II", Naples, Italy.,Department of Marine and Coastal Science, Rutgers, The State University of New Jersey, New Brunswick, NJ, United States.,Institute for Biological Resources and Marine Biotechnology, National Research Council of Italy, Ancona, Italy
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33
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Parkes RJ, Berlendis S, Roussel EG, Bahruji H, Webster G, Oldroyd A, Weightman AJ, Bowker M, Davies PR, Sass H. Rock-crushing derived hydrogen directly supports a methanogenic community: significance for the deep biosphere. ENVIRONMENTAL MICROBIOLOGY REPORTS 2019; 11:165-172. [PMID: 30507067 PMCID: PMC7379504 DOI: 10.1111/1758-2229.12723] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/10/2017] [Accepted: 11/21/2018] [Indexed: 06/09/2023]
Abstract
Microbial populations exist to great depths on Earth, but with apparently insufficient energy supply. Earthquake rock fracturing produces H2 from mechanochemical water splitting, however, microbial utilization of this widespread potential energy source has not been directly demonstrated. Here, we show experimentally that mechanochemically generated H2 from granite can be directly, long-term, utilized by a CH4 producing microbial community. This is consistent with CH4 formation in subsurface rock fracturing in the environment. Our results not only support water splitting H2 generation as a potential deep biosphere energy source, but as an oxidant must also be produced, they suggest that there is also a respiratory oxidant supply in the subsurface which is independent of photosynthesis. This may explain the widespread distribution of facultative aerobes in subsurface environments. A range of common rocks were shown to produce mechanochemical H2 , and hence, this process should be widespread in the subsurface, with the potential for considerable mineral fuelled CH4 production.
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Affiliation(s)
- Ronald John Parkes
- School of Earth and Ocean SciencesMain Building, Park Place, Cardiff UniversityCardiffCF10 3ATWales, UK
| | - Sabrina Berlendis
- School of Earth and Ocean SciencesMain Building, Park Place, Cardiff UniversityCardiffCF10 3ATWales, UK
| | - Erwan G. Roussel
- School of Earth and Ocean SciencesMain Building, Park Place, Cardiff UniversityCardiffCF10 3ATWales, UK
| | - Hasiliza Bahruji
- Cardiff Catalysis Institute, School of ChemistryCardiff UniversityCardiff, CF10 3ATWales, UK
| | - Gordon Webster
- School of Earth and Ocean SciencesMain Building, Park Place, Cardiff UniversityCardiffCF10 3ATWales, UK
- School of BiosciencesSir Martin Evans Building, Cardiff UniversityMuseum AvenueCardiffCF10 3AXWales, UK
| | - Anthony Oldroyd
- School of Earth and Ocean SciencesMain Building, Park Place, Cardiff UniversityCardiffCF10 3ATWales, UK
| | - Andrew J. Weightman
- School of BiosciencesSir Martin Evans Building, Cardiff UniversityMuseum AvenueCardiffCF10 3AXWales, UK
| | - Michael Bowker
- Cardiff Catalysis Institute, School of ChemistryCardiff UniversityCardiff, CF10 3ATWales, UK
| | - Philip R. Davies
- Cardiff Catalysis Institute, School of ChemistryCardiff UniversityCardiff, CF10 3ATWales, UK
| | - Henrik Sass
- School of Earth and Ocean SciencesMain Building, Park Place, Cardiff UniversityCardiffCF10 3ATWales, UK
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35
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Yung YL, Chen P, Nealson K, Atreya S, Beckett P, Blank JG, Ehlmann B, Eiler J, Etiope G, Ferry JG, Forget F, Gao P, Hu R, Kleinböhl A, Klusman R, Lefèvre F, Miller C, Mischna M, Mumma M, Newman S, Oehler D, Okumura M, Oremland R, Orphan V, Popa R, Russell M, Shen L, Sherwood Lollar B, Staehle R, Stamenković V, Stolper D, Templeton A, Vandaele AC, Viscardy S, Webster CR, Wennberg PO, Wong ML, Worden J. Methane on Mars and Habitability: Challenges and Responses. ASTROBIOLOGY 2018; 18:1221-1242. [PMID: 30234380 PMCID: PMC6205098 DOI: 10.1089/ast.2018.1917] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/07/2018] [Accepted: 06/12/2018] [Indexed: 05/05/2023]
Abstract
Recent measurements of methane (CH4) by the Mars Science Laboratory (MSL) now confront us with robust data that demand interpretation. Thus far, the MSL data have revealed a baseline level of CH4 (∼0.4 parts per billion by volume [ppbv]), with seasonal variations, as well as greatly enhanced spikes of CH4 with peak abundances of ∼7 ppbv. What do these CH4 revelations with drastically different abundances and temporal signatures represent in terms of interior geochemical processes, or is martian CH4 a biosignature? Discerning how CH4 generation occurs on Mars may shed light on the potential habitability of Mars. There is no evidence of life on the surface of Mars today, but microbes might reside beneath the surface. In this case, the carbon flux represented by CH4 would serve as a link between a putative subterranean biosphere on Mars and what we can measure above the surface. Alternatively, CH4 records modern geochemical activity. Here we ask the fundamental question: how active is Mars, geochemically and/or biologically? In this article, we examine geological, geochemical, and biogeochemical processes related to our overarching question. The martian atmosphere and surface are an overwhelmingly oxidizing environment, and life requires pairing of electron donors and electron acceptors, that is, redox gradients, as an essential source of energy. Therefore, a fundamental and critical question regarding the possibility of life on Mars is, "Where can we find redox gradients as energy sources for life on Mars?" Hence, regardless of the pathway that generates CH4 on Mars, the presence of CH4, a reduced species in an oxidant-rich environment, suggests the possibility of redox gradients supporting life and habitability on Mars. Recent missions such as ExoMars Trace Gas Orbiter may provide mapping of the global distribution of CH4. To discriminate between abiotic and biotic sources of CH4 on Mars, future studies should use a series of diagnostic geochemical analyses, preferably performed below the ground or at the ground/atmosphere interface, including measurements of CH4 isotopes, methane/ethane ratios, H2 gas concentration, and species such as acetic acid. Advances in the fields of Mars exploration and instrumentation will be driven, augmented, and supported by an improved understanding of atmospheric chemistry and dynamics, deep subsurface biogeochemistry, astrobiology, planetary geology, and geophysics. Future Mars exploration programs will have to expand the integration of complementary areas of expertise to generate synergistic and innovative ideas to realize breakthroughs in advancing our understanding of the potential of life and habitable conditions having existed on Mars. In this spirit, we conducted a set of interdisciplinary workshops. From this series has emerged a vision of technological, theoretical, and methodological innovations to explore the martian subsurface and to enhance spatial tracking of key volatiles, such as CH4.
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Affiliation(s)
- Yuk L. Yung
- California Institute of Technology, Pasadena, California
- NASA Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California
| | - Pin Chen
- NASA Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California
| | | | | | | | - Jennifer G. Blank
- NASA Ames Research Center, Blue Marble Space Institute of Science, Mountain View, California
| | - Bethany Ehlmann
- California Institute of Technology, Pasadena, California
- NASA Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California
| | - John Eiler
- California Institute of Technology, Pasadena, California
| | - Giuseppe Etiope
- Istituto Nazionale di Geofisica e Vulcanologia, Rome, Italy
- Faculty of Environmental Science and Engineering, Babes-Bolyai University, Cluj-Napoca, Romania
| | - James G. Ferry
- The Pennsylvania State University, University Park, Pennsylvania
| | - Francois Forget
- Laboratoire de Météorologie Dynamique, Institut Pierre Simon Laplace, CNRS, Paris, France
| | - Peter Gao
- University of California, Berkeley, California
| | - Renyu Hu
- NASA Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California
| | - Armin Kleinböhl
- NASA Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California
| | | | - Franck Lefèvre
- Laboratoire Atmospheres, Milieux, Observations Spatiales (LATMOS), IPSL, Paris, France
| | - Charles Miller
- NASA Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California
| | - Michael Mischna
- NASA Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California
| | - Michael Mumma
- NASA Goddard Space Flight Center, Greenbelt, Maryland
| | - Sally Newman
- California Institute of Technology, Pasadena, California
| | | | | | | | | | - Radu Popa
- University of Southern California, Los Angeles, California
| | - Michael Russell
- NASA Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California
| | - Linhan Shen
- California Institute of Technology, Pasadena, California
| | | | - Robert Staehle
- NASA Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California
| | - Vlada Stamenković
- California Institute of Technology, Pasadena, California
- NASA Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California
| | | | | | - Ann C. Vandaele
- The Royal Belgian Institute for Space Aeronomy (BIRA-IASB), Brussels, Belgium
| | - Sébastien Viscardy
- The Royal Belgian Institute for Space Aeronomy (BIRA-IASB), Brussels, Belgium
| | - Christopher R. Webster
- NASA Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California
| | | | | | - John Worden
- NASA Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California
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Preiner M, Xavier JC, Sousa FL, Zimorski V, Neubeck A, Lang SQ, Greenwell HC, Kleinermanns K, Tüysüz H, McCollom TM, Holm NG, Martin WF. Serpentinization: Connecting Geochemistry, Ancient Metabolism and Industrial Hydrogenation. Life (Basel) 2018; 8:life8040041. [PMID: 30249016 PMCID: PMC6316048 DOI: 10.3390/life8040041] [Citation(s) in RCA: 41] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2018] [Revised: 09/18/2018] [Accepted: 09/20/2018] [Indexed: 11/16/2022] Open
Abstract
Rock⁻water⁻carbon interactions germane to serpentinization in hydrothermal vents have occurred for over 4 billion years, ever since there was liquid water on Earth. Serpentinization converts iron(II) containing minerals and water to magnetite (Fe₃O₄) plus H₂. The hydrogen can generate native metals such as awaruite (Ni₃Fe), a common serpentinization product. Awaruite catalyzes the synthesis of methane from H₂ and CO₂ under hydrothermal conditions. Native iron and nickel catalyze the synthesis of formate, methanol, acetate, and pyruvate-intermediates of the acetyl-CoA pathway, the most ancient pathway of CO₂ fixation. Carbon monoxide dehydrogenase (CODH) is central to the pathway and employs Ni⁰ in its catalytic mechanism. CODH has been conserved during 4 billion years of evolution as a relic of the natural CO₂-reducing catalyst at the onset of biochemistry. The carbide-containing active site of nitrogenase-the only enzyme on Earth that reduces N₂-is probably also a relic, a biological reconstruction of the naturally occurring inorganic catalyst that generated primordial organic nitrogen. Serpentinization generates Fe₃O₄ and H₂, the catalyst and reductant for industrial CO₂ hydrogenation and for N₂ reduction via the Haber⁻Bosch process. In both industrial processes, an Fe₃O₄ catalyst is matured via H₂-dependent reduction to generate Fe₅C₂ and Fe₂N respectively. Whether serpentinization entails similar catalyst maturation is not known. We suggest that at the onset of life, essential reactions leading to reduced carbon and reduced nitrogen occurred with catalysts that were synthesized during the serpentinization process, connecting the chemistry of life and Earth to industrial chemistry in unexpected ways.
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Affiliation(s)
- Martina Preiner
- Institute of Molecular Evolution, University of Düsseldorf, 40225 Düsseldorf, Germany.
| | - Joana C Xavier
- Institute of Molecular Evolution, University of Düsseldorf, 40225 Düsseldorf, Germany.
| | - Filipa L Sousa
- Division of Archaea Biology and Ecogenomics, Department of Ecogenomics and Systems Biology, University of Vienna, Althanstrasse 14 UZA I, 1090 Vienna, Austria.
| | - Verena Zimorski
- Institute of Molecular Evolution, University of Düsseldorf, 40225 Düsseldorf, Germany.
| | - Anna Neubeck
- Department of Earth Sciences, Palaeobiology, Uppsala University, Geocentrum, Villavägen 16, SE-752 36 Uppsala, Sweden.
| | - Susan Q Lang
- School of the Earth, Ocean, and Environment, University of South Carolina, 701 Sumter St. EWS 401, Columbia, SC 29208, USA.
| | - H Chris Greenwell
- Department of Earth Sciences, Durham University, South Road, DH1 3LE Durham, UK.
| | - Karl Kleinermanns
- Institute for Physical Chemistry, University of Düsseldorf, 40225 Düsseldorf, Germany.
| | - Harun Tüysüz
- Max-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz 1, 45470 Mülheim an der Ruhr, Germany.
| | - Tom M McCollom
- Laboratory for Atmospheric and Space Physics, University of Colorado, Boulder, CO 80309, USA.
| | - Nils G Holm
- Department of Geological Sciences, Stockholm University, SE-106 91 Stockholm, Sweden.
| | - William F Martin
- Institute of Molecular Evolution, University of Düsseldorf, 40225 Düsseldorf, Germany.
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Jones RM, Goordial JM, Orcutt BN. Low Energy Subsurface Environments as Extraterrestrial Analogs. Front Microbiol 2018; 9:1605. [PMID: 30072971 PMCID: PMC6058055 DOI: 10.3389/fmicb.2018.01605] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2018] [Accepted: 06/27/2018] [Indexed: 11/13/2022] Open
Abstract
Earth's subsurface is often isolated from phototrophic energy sources and characterized by chemotrophic modes of life. These environments are often oligotrophic and limited in electron donors or electron acceptors, and include continental crust, subseafloor oceanic crust, and marine sediment as well as subglacial lakes and the subsurface of polar desert soils. These low energy subsurface environments are therefore uniquely positioned for examining minimum energetic requirements and adaptations for chemotrophic life. Current targets for astrobiology investigations of extant life are planetary bodies with largely inhospitable surfaces, such as Mars, Europa, and Enceladus. Subsurface environments on Earth thus serve as analogs to explore possibilities of subsurface life on extraterrestrial bodies. The purpose of this review is to provide an overview of subsurface environments as potential analogs, and the features of microbial communities existing in these low energy environments, with particular emphasis on how they inform the study of energetic limits required for life. The thermodynamic energetic calculations presented here suggest that free energy yields of reactions and energy density of some metabolic redox reactions on Mars, Europa, Enceladus, and Titan could be comparable to analog environments in Earth's low energy subsurface habitats.
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Affiliation(s)
| | | | - Beth N. Orcutt
- Bigelow Laboratory for Ocean Sciences, East Boothbay, ME, United States
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Hao J, Giovenco E, Pedreira-Segade U, Montagnac G, Daniel I. Compatibility of Amino Acids in Ice Ih: Implications for the Origin of Life. ASTROBIOLOGY 2018; 18:381-392. [PMID: 29620923 DOI: 10.1089/ast.2017.1735] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
Icy environments may have been common on early Earth due to the faint young sun. Previous studies have proposed that the formation of large icy bodies in the early ocean could concentrate the building blocks of life in eutectic fluids and, therefore, facilitate the polymerization of monomers. This hypothesis is based on the untested assumption that organic molecules are virtually incompatible in ice Ih (hexagonal ice). In this study, we conducted freezing experiments to explore the partitioning behavior of selected amino acids (AAs; glycine, l-alanine, l-proline, and l-phenylalanine) between ice Ih and aqueous solutions analogous to seawater. We allowed ice crystals to grow slowly from a few seeds in equilibrium with the solution and used Raman spectroscopy to analyze in situ the relative concentrations of AAs in the ice and aqueous solution. During freezing, there was no precipitation of AA crystals, indicating that the concentrations in solution never reached their solubility limit, even when the droplet was mostly frozen. Analyses of the Raman spectra of the ice and eutectic solution suggested that considerable amounts of AAs existed in the ice phase with partition coefficients varying between 0.2 and 0.5. These observations imply little incompatibility of AAs in ice Ih during the freezing of the solutions, rendering the concentration hypothesis in a eutectic system unwarranted. However, incorporation into ice Ih could protect AAs from decomposition or racemization and significantly improve the efficiency of extraterrestrial transport of small organics. Therefore, this study supports the hypothesis of extraterrestrial delivery of organic molecules in icy comets and asteroids to the primitive Earth as suggested by an increasing number of independent observations. Key Words: Ice Ih-Partition coefficient-Amino acids-Polymerization-Extraterrestrial transport of organics. Astrobiology 18, 381-392.
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Affiliation(s)
- Jihua Hao
- Univ Lyon, Université Lyon 1 , Ens de Lyon, CNRS, UMR 5276 LGL-TPE, Villeurbanne, France
| | - Elena Giovenco
- Univ Lyon, Université Lyon 1 , Ens de Lyon, CNRS, UMR 5276 LGL-TPE, Villeurbanne, France
| | - Ulysse Pedreira-Segade
- Univ Lyon, Université Lyon 1 , Ens de Lyon, CNRS, UMR 5276 LGL-TPE, Villeurbanne, France
| | - Gilles Montagnac
- Univ Lyon, Université Lyon 1 , Ens de Lyon, CNRS, UMR 5276 LGL-TPE, Villeurbanne, France
| | - Isabelle Daniel
- Univ Lyon, Université Lyon 1 , Ens de Lyon, CNRS, UMR 5276 LGL-TPE, Villeurbanne, France
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Vance SD, Kedar S, Panning MP, Stähler SC, Bills BG, Lorenz RD, Huang HH, Pike WT, Castillo JC, Lognonné P, Tsai VC, Rhoden AR. Vital Signs: Seismology of Icy Ocean Worlds. ASTROBIOLOGY 2018; 18:37-53. [PMID: 29345986 DOI: 10.1089/ast.2016.1612] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
Ice-covered ocean worlds possess diverse energy sources and associated mechanisms that are capable of driving significant seismic activity, but to date no measurements of their seismic activity have been obtained. Such investigations could reveal the transport properties and radial structures, with possibilities for locating and characterizing trapped liquids that may host life and yielding critical constraints on redox fluxes and thus on habitability. Modeling efforts have examined seismic sources from tectonic fracturing and impacts. Here, we describe other possible seismic sources, their associations with science questions constraining habitability, and the feasibility of implementing such investigations. We argue, by analogy with the Moon, that detectable seismic activity should occur frequently on tidally flexed ocean worlds. Their ices fracture more easily than rocks and dissipate more tidal energy than the <1 GW of the Moon and Mars. Icy ocean worlds also should create less thermal noise due to their greater distance and consequently smaller diurnal temperature variations. They also lack substantial atmospheres (except in the case of Titan) that would create additional noise. Thus, seismic experiments could be less complex and less susceptible to noise than prior or planned planetary seismology investigations of the Moon or Mars. Key Words: Seismology-Redox-Ocean worlds-Europa-Ice-Hydrothermal. Astrobiology 18, 37-53.
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Affiliation(s)
- Steven D Vance
- 1 Jet Propulsion Laboratory, California Institute of Technology , Pasadena, California, USA
| | - Sharon Kedar
- 1 Jet Propulsion Laboratory, California Institute of Technology , Pasadena, California, USA
| | - Mark P Panning
- 1 Jet Propulsion Laboratory, California Institute of Technology , Pasadena, California, USA
| | - Simon C Stähler
- 2 Institute of Geophysics , ETH Zürich, Zürich, Switzerland
- 3 Leibniz-Institute for Baltic Sea Research (IOW) , Rostock, Germany
| | - Bruce G Bills
- 1 Jet Propulsion Laboratory, California Institute of Technology , Pasadena, California, USA
| | - Ralph D Lorenz
- 4 Johns Hopkins Applied Physics Laboratory , Laurel, Maryland, USA
| | - Hsin-Hua Huang
- 5 Institute of Earth Sciences , Academia Sinica, Taipei, Taiwan
- 6 Seismological Laboratory, California Institute of Technology , Pasadena, California, USA
| | - W T Pike
- 7 Optical and Semiconductor Devices Group, Department of Electrical and Electronic Engineering, Imperial College , London, UK
| | - Julie C Castillo
- 1 Jet Propulsion Laboratory, California Institute of Technology , Pasadena, California, USA
| | - Philippe Lognonné
- 8 Univ Paris Diderot-Sorbonne Paris Cité, Institut de Physique du Globe de Paris , Paris, France
| | - Victor C Tsai
- 6 Seismological Laboratory, California Institute of Technology , Pasadena, California, USA
| | - Alyssa R Rhoden
- 9 School of Earth and Space Exploration, Arizona State University , Tempe, Arizona, USA
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Oehler DZ, Etiope G. Methane Seepage on Mars: Where to Look and Why. ASTROBIOLOGY 2017; 17:1233-1264. [PMID: 28771029 PMCID: PMC5730060 DOI: 10.1089/ast.2017.1657] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/01/2017] [Accepted: 05/14/2017] [Indexed: 05/09/2023]
Abstract
Methane on Mars is a topic of special interest because of its potential association with microbial life. The variable detections of methane by the Curiosity rover, orbiters, and terrestrial telescopes, coupled with methane's short lifetime in the martian atmosphere, may imply an active gas source in the planet's subsurface, with migration and surface emission processes similar to those known on Earth as "gas seepage." Here, we review the variety of subsurface processes that could result in methane seepage on Mars. Such methane could originate from abiotic chemical reactions, thermogenic alteration of abiotic or biotic organic matter, and ancient or extant microbial metabolism. These processes can occur over a wide range of temperatures, in both sedimentary and igneous rocks, and together they enhance the possibility that significant amounts of methane could have formed on early Mars. Methane seepage to the surface would occur preferentially along faults and fractures, through focused macro-seeps and/or diffuse microseepage exhalations. Our work highlights the types of features on Mars that could be associated with methane release, including mud-volcano-like mounds in Acidalia or Utopia; proposed ancient springs in Gusev Crater, Arabia Terra, and Valles Marineris; and rims of large impact craters. These could have been locations of past macro-seeps and may still emit methane today. Microseepage could occur through faults along the dichotomy or fractures such as those at Nili Fossae, Cerberus Fossae, the Argyre impact, and those produced in serpentinized rocks. Martian microseepage would be extremely difficult to detect remotely yet could constitute a significant gas source. We emphasize that the most definitive detection of methane seepage from different release candidates would be best provided by measurements performed in the ground or at the ground-atmosphere interface by landers or rovers and that the technology for such detection is currently available. Key Words: Mars-Methane-Seepage-Clathrate-Fischer-Tropsch-Serpentinization. Astrobiology 17, 1233-1264.
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Affiliation(s)
| | - Giuseppe Etiope
- Istituto Nazionale di Geofisica e Vulcanologia, Sezione Roma 2, Roma, Italy, and Faculty of Environmental Science and Engineering, Babes-Bolyai University, Cluj-Napoca, Romania
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Garcia-Lopez E, Cid C. Glaciers and Ice Sheets As Analog Environments of Potentially Habitable Icy Worlds. Front Microbiol 2017; 8:1407. [PMID: 28804477 PMCID: PMC5532398 DOI: 10.3389/fmicb.2017.01407] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2017] [Accepted: 07/11/2017] [Indexed: 01/09/2023] Open
Abstract
Icy worlds in the solar system and beyond have attracted a remarkable attention as possible habitats for life. The current consideration about whether life exists beyond Earth is based on our knowledge of life in terrestrial cold environments. On Earth, glaciers and ice sheets have been considered uninhabited for a long time as they seemed too hostile to harbor life. However, these environments are unique biomes dominated by microbial communities which maintain active biochemical routes. Thanks to techniques such as microscopy and more recently DNA sequencing methods, a great biodiversity of prokaryote and eukaryote microorganisms have been discovered. These microorganisms are adapted to a harsh environment, in which the most extreme features are the lack of liquid water, extremely cold temperatures, high solar radiation and nutrient shortage. Here we compare the environmental characteristics of icy worlds, and the environmental characteristics of terrestrial glaciers and ice sheets in order to address some interesting questions: (i) which are the characteristics of habitability known for the frozen worlds, and which could be compatible with life, (ii) what are the environmental characteristics of terrestrial glaciers and ice sheets that can be life-limiting, (iii) What are the microbial communities of prokaryotic and eukaryotic microorganisms that can live in them, and (iv) taking into account these observations, could any of these planets or satellites meet the conditions of habitability? In this review, the icy worlds are considered from the point of view of astrobiological exploration. With the aim of determining whether icy worlds could be potentially habitable, they have been compared with the environmental features of glaciers and ice sheets on Earth. We also reviewed some field and laboratory investigations about microorganisms that live in analog environments of icy worlds, where they are not only viable but also metabolically active.
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Affiliation(s)
| | - Cristina Cid
- Microbial Evolution Laboratory, Centro de Astrobiología (Consejo Superior de Investigaciones Cientificas-Instituto Nacional de Técnica Aeroespacial)Madrid, Spain
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Vago JL, Westall F. Habitability on Early Mars and the Search for Biosignatures with the ExoMars Rover. ASTROBIOLOGY 2017; 17:471-510. [PMID: 31067287 PMCID: PMC5685153 DOI: 10.1089/ast.2016.1533] [Citation(s) in RCA: 149] [Impact Index Per Article: 18.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/11/2016] [Accepted: 03/05/2017] [Indexed: 05/19/2023]
Abstract
The second ExoMars mission will be launched in 2020 to target an ancient location interpreted to have strong potential for past habitability and for preserving physical and chemical biosignatures (as well as abiotic/prebiotic organics). The mission will deliver a lander with instruments for atmospheric and geophysical investigations and a rover tasked with searching for signs of extinct life. The ExoMars rover will be equipped with a drill to collect material from outcrops and at depth down to 2 m. This subsurface sampling capability will provide the best chance yet to gain access to chemical biosignatures. Using the powerful Pasteur payload instruments, the ExoMars science team will conduct a holistic search for traces of life and seek corroborating geological context information. Key Words: Biosignatures-ExoMars-Landing sites-Mars rover-Search for life. Astrobiology 17, 471-510.
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Self-Referential Encoding on Modules of Anticodon Pairs-Roots of the Biological Flow System. Life (Basel) 2017; 7:life7020016. [PMID: 28383509 PMCID: PMC5492138 DOI: 10.3390/life7020016] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2017] [Revised: 03/24/2017] [Accepted: 03/26/2017] [Indexed: 12/22/2022] Open
Abstract
The proposal that the genetic code was formed on the basis of (proto)tRNA Dimer-Directed Protein Synthesis is reviewed and updated. The tRNAs paired through the anticodon loops are an indication on the process. Dimers are considered mimics of the ribosomes-structures that hold tRNAs together and facilitate the transferase reaction, and of the translation process-anticodons are at the same time codons for each other. The primitive protein synthesis system gets stabilized when the product peptides are stable and apt to bind the producers therewith establishing a self-stimulating production cycle. The chronology of amino acid encoding starts with Glycine and Serine, indicating the metabolic support of the Glycine-Serine C1-assimilation pathway, which is also consistent with evidence on origins of bioenergetics mechanisms. Since it is not possible to reach for substrates simpler than C1 and compounds in the identified pathway are apt for generating the other central metabolic routes, it is considered that protein synthesis is the beginning and center of a succession of sink-effective mechanisms that drive the formation and evolution of the metabolic flow system. Plasticity and diversification of proteins construct the cellular system following the orientation given by the flow and implementing it. Nucleic acid monomers participate in bioenergetics and the polymers are conservative memory systems for the synthesis of proteins. Protoplasmic fission is the final sink-effective mechanism, part of cell reproduction, guaranteeing that proteins don't accumulate to saturation, which would trigger inhibition.
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Pascal R. Physicochemical Requirements Inferred for Chemical Self-Organization Hardly Support an Emergence of Life in the Deep Oceans of Icy Moons. ASTROBIOLOGY 2016; 16:328-334. [PMID: 27116590 DOI: 10.1089/ast.2015.1412] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
UNLABELLED An approach to the origin of life, focused on the property of entities capable of reproducing themselves far from equilibrium, has been developed recently. Independently, the possibility of the emergence of life in the hydrothermal systems possibly present in the deep oceans below the frozen crust of some of the moons of Jupiter and Saturn has been raised. The present report is aimed at investigating the mutual compatibility of these alternative views. In this approach, the habitability concept deduced from the limits of life on Earth is considered to be inappropriate with regard to emerging life due to the requirement for an energy source of sufficient potential (equivalent to the potential of visible light). For these icy moons, no driving force would have been present to assist the process of emergence, which would then have had to rely exclusively on highly improbable events, thereby making the presence of life unlikely on these Solar System bodies, that is, unless additional processes are introduced for feeding chemical systems undergoing a transition toward life and the early living organisms. KEY WORDS Icy moon-Bioenergetics-Chemical evolution-Habitability-Origin of life. Astrobiology 16, 328-334.
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Affiliation(s)
- Robert Pascal
- Institut des Biomolécules Max Mousseron (IBMM, UMR 5247, CNRS/Université de Montpellier/ENSCM), Montpellier, France
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Horneck G, Walter N, Westall F, Grenfell JL, Martin WF, Gomez F, Leuko S, Lee N, Onofri S, Tsiganis K, Saladino R, Pilat-Lohinger E, Palomba E, Harrison J, Rull F, Muller C, Strazzulla G, Brucato JR, Rettberg P, Capria MT. AstRoMap European Astrobiology Roadmap. ASTROBIOLOGY 2016; 16:201-43. [PMID: 27003862 PMCID: PMC4834528 DOI: 10.1089/ast.2015.1441] [Citation(s) in RCA: 42] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/01/2015] [Accepted: 01/27/2016] [Indexed: 05/07/2023]
Abstract
The European AstRoMap project (supported by the European Commission Seventh Framework Programme) surveyed the state of the art of astrobiology in Europe and beyond and produced the first European roadmap for astrobiology research. In the context of this roadmap, astrobiology is understood as the study of the origin, evolution, and distribution of life in the context of cosmic evolution; this includes habitability in the Solar System and beyond. The AstRoMap Roadmap identifies five research topics, specifies several key scientific objectives for each topic, and suggests ways to achieve all the objectives. The five AstRoMap Research Topics are • Research Topic 1: Origin and Evolution of Planetary Systems • Research Topic 2: Origins of Organic Compounds in Space • Research Topic 3: Rock-Water-Carbon Interactions, Organic Synthesis on Earth, and Steps to Life • Research Topic 4: Life and Habitability • Research Topic 5: Biosignatures as Facilitating Life Detection It is strongly recommended that steps be taken towards the definition and implementation of a European Astrobiology Platform (or Institute) to streamline and optimize the scientific return by using a coordinated infrastructure and funding system.
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Affiliation(s)
- Gerda Horneck
- European Astrobiology Network Association
- Institute of Aerospace Medicine, German Aerospace Center (DLR), Köln, Germany
| | | | - Frances Westall
- Centre National de la Recherche Scientifique–Centre de Biophysique Moléculaire, Orleans, France
| | - John Lee Grenfell
- Institute for Planetary Research, German Aerospace Center (DLR), Berlin, Germany
| | - William F. Martin
- Institute of Molecular Evolution, Heinrich-Heine University of Düsseldorf, Düsseldorf, Germany
| | - Felipe Gomez
- INTA Centre for Astrobiology, Torrejón de Ardoz, Madrid, Spain
| | - Stefan Leuko
- Institute of Aerospace Medicine, German Aerospace Center (DLR), Köln, Germany
| | - Natuschka Lee
- Department of Ecology and Environmental Science, Umeå University, Umeå, Sweden
- Department of Microbiology, Technical University München, München, Germany
| | - Silvano Onofri
- Department of Ecological and Biological Sciences, University of Tuscia, Viterbo, Italy
| | - Kleomenis Tsiganis
- Department of Physics, Section of Astrophysics, Astronomy and Mechanics, Aristotle University of Thessaloniki, Thessaloniki, Greece
| | - Raffaele Saladino
- Department of Agrobiology and Agrochemistry, University of Tuscia, Viterbo, Italy
| | | | - Ernesto Palomba
- INAF–Institute for Space Astrophysics and Planetology, Rome, Italy
| | - Jesse Harrison
- Department of Microbiology and Ecosystem Science, University of Vienna, Vienna, Austria
| | - Fernando Rull
- Department of Condensed Matter Physics, Crystallography and Mineralogy, Valladolid University, Valladolid, Spain
| | | | | | | | - Petra Rettberg
- Institute of Aerospace Medicine, German Aerospace Center (DLR), Köln, Germany
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Westall F, Foucher F, Bost N, Bertrand M, Loizeau D, Vago JL, Kminek G, Gaboyer F, Campbell KA, Bréhéret JG, Gautret P, Cockell CS. Biosignatures on Mars: What, Where, and How? Implications for the Search for Martian Life. ASTROBIOLOGY 2015; 15:998-1029. [PMID: 26575218 PMCID: PMC4653824 DOI: 10.1089/ast.2015.1374] [Citation(s) in RCA: 91] [Impact Index Per Article: 9.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/01/2015] [Accepted: 10/13/2015] [Indexed: 05/18/2023]
Abstract
UNLABELLED The search for traces of life is one of the principal objectives of Mars exploration. Central to this objective is the concept of habitability, the set of conditions that allows the appearance of life and successful establishment of microorganisms in any one location. While environmental conditions may have been conducive to the appearance of life early in martian history, habitable conditions were always heterogeneous on a spatial scale and in a geological time frame. This "punctuated" scenario of habitability would have had important consequences for the evolution of martian life, as well as for the presence and preservation of traces of life at a specific landing site. We hypothesize that, given the lack of long-term, continuous habitability, if martian life developed, it was (and may still be) chemotrophic and anaerobic. Obtaining nutrition from the same kinds of sources as early terrestrial chemotrophic life and living in the same kinds of environments, the fossilized traces of the latter serve as useful proxies for understanding the potential distribution of martian chemotrophs and their fossilized traces. Thus, comparison with analog, anaerobic, volcanic terrestrial environments (Early Archean >3.5-3.33 Ga) shows that the fossil remains of chemotrophs in such environments were common, although sparsely distributed, except in the vicinity of hydrothermal activity where nutrients were readily available. Moreover, the traces of these kinds of microorganisms can be well preserved, provided that they are rapidly mineralized and that the sediments in which they occur are rapidly cemented. We evaluate the biogenicity of these signatures by comparing them to possible abiotic features. Finally, we discuss the implications of different scenarios for life on Mars for detection by in situ exploration, ranging from its non-appearance, through preserved traces of life, to the presence of living microorganisms. KEY WORDS Mars-Early Earth-Anaerobic chemotrophs-Biosignatures-Astrobiology missions to Mars.
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Affiliation(s)
- Frances Westall
- CNRS-OSUC-Centre de Biophysique Moléculaire, CS80054, Orléans, France
| | - Frédéric Foucher
- CNRS-OSUC-Centre de Biophysique Moléculaire, CS80054, Orléans, France
| | - Nicolas Bost
- CNRS-Conditions Extrêmes et Matériaux: Haute Température et Irradiation, CS90055, Orléans, France
| | - Marylène Bertrand
- CNRS-OSUC-Centre de Biophysique Moléculaire, CS80054, Orléans, France
| | | | | | | | - Frédéric Gaboyer
- CNRS-OSUC-Centre de Biophysique Moléculaire, CS80054, Orléans, France
| | | | - Jean-Gabriel Bréhéret
- GéoHydrosytèmes Continentaux, Faculté des Sciences et Techniques, Université François-Rabelais de Tours, Tours, France
| | - Pascale Gautret
- CNRS-OSUC-Institut des Sciences de la Terre d'Orléans, Orléans, France
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Mousis O, Chassefière E, Holm NG, Bouquet A, Waite JH, Geppert WD, Picaud S, Aikawa Y, Ali-Dib M, Charlou JL, Rousselot P. Methane clathrates in the solar system. ASTROBIOLOGY 2015; 15:308-326. [PMID: 25774974 DOI: 10.1089/ast.2014.1189] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
We review the reservoirs of methane clathrates that may exist in the different bodies of the Solar System. Methane was formed in the interstellar medium prior to having been embedded in the protosolar nebula gas phase. This molecule was subsequently trapped in clathrates that formed from crystalline water ice during the cooling of the disk and incorporated in this form into the building blocks of comets, icy bodies, and giant planets. Methane clathrates may play an important role in the evolution of planetary atmospheres. On Earth, the production of methane in clathrates is essentially biological, and these compounds are mostly found in permafrost regions or in the sediments of continental shelves. On Mars, methane would more likely derive from hydrothermal reactions with olivine-rich material. If they do exist, martian methane clathrates would be stable only at depth in the cryosphere and sporadically release some methane into the atmosphere via mechanisms that remain to be determined. In the case of Titan, most of its methane probably originates from the protosolar nebula, where it would have been trapped in the clathrates agglomerated by the satellite's building blocks. Methane clathrates are still believed to play an important role in the present state of Titan. Their presence is invoked in the satellite's subsurface as a means of replenishing its atmosphere with methane via outgassing episodes. The internal oceans of Enceladus and Europa also provide appropriate thermodynamic conditions that allow formation of methane clathrates. In turn, these clathrates might influence the composition of these liquid reservoirs. Finally, comets and Kuiper Belt Objects might have formed from the agglomeration of clathrates and pure ices in the nebula. The methane observed in comets would then result from the destabilization of clathrate layers in the nuclei concurrent with their approach to perihelion. Thermodynamic equilibrium calculations show that methane-rich clathrate layers may exist on Pluto as well. Key Words: Methane clathrate-Protosolar nebula-Terrestrial planets-Outer Solar System. Astrobiology 15, 308-326.
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Affiliation(s)
- Olivier Mousis
- 1 Aix Marseille Université , CNRS, LAM (Laboratoire d'Astrophysique de Marseille) UMR 7326, Marseille, France
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